[{"publication_identifier":{"issn":["0737-4038"]},"month":"08","isi":1,"quality_controlled":"1","oa":1,"main_file_link":[{"open_access":"1","url":"https://www.ncbi.nlm.nih.gov/pubmed/30169679"}],"external_id":{"pmid":["30169679"],"isi":["000452567200006"]},"language":[{"iso":"eng"}],"doi":"10.1093/molbev/msy163","publist_id":"8036","department":[{"_id":"CaGu"},{"_id":"GaTk"}],"publisher":"Oxford University Press","publication_status":"published","pmid":1,"year":"2018","volume":35,"date_updated":"2023-10-17T11:51:06Z","date_created":"2018-12-11T11:44:11Z","author":[{"full_name":"Palmer, Adam","first_name":"Adam","last_name":"Palmer"},{"full_name":"Chait, Remy P","last_name":"Chait","first_name":"Remy P","orcid":"0000-0003-0876-3187","id":"3464AE84-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Roy","last_name":"Kishony","full_name":"Kishony, Roy"}],"scopus_import":"1","article_processing_charge":"No","day":"28","page":"2669 - 2684","article_type":"original","citation":{"apa":"Palmer, A., Chait, R. P., & Kishony, R. (2018). Nonoptimal gene expression creates latent potential for antibiotic resistance. Molecular Biology and Evolution. Oxford University Press. https://doi.org/10.1093/molbev/msy163","ieee":"A. Palmer, R. P. Chait, and R. Kishony, “Nonoptimal gene expression creates latent potential for antibiotic resistance,” Molecular Biology and Evolution, vol. 35, no. 11. Oxford University Press, pp. 2669–2684, 2018.","ista":"Palmer A, Chait RP, Kishony R. 2018. Nonoptimal gene expression creates latent potential for antibiotic resistance. Molecular Biology and Evolution. 35(11), 2669–2684.","ama":"Palmer A, Chait RP, Kishony R. Nonoptimal gene expression creates latent potential for antibiotic resistance. Molecular Biology and Evolution. 2018;35(11):2669-2684. doi:10.1093/molbev/msy163","chicago":"Palmer, Adam, Remy P Chait, and Roy Kishony. “Nonoptimal Gene Expression Creates Latent Potential for Antibiotic Resistance.” Molecular Biology and Evolution. Oxford University Press, 2018. https://doi.org/10.1093/molbev/msy163.","short":"A. Palmer, R.P. Chait, R. Kishony, Molecular Biology and Evolution 35 (2018) 2669–2684.","mla":"Palmer, Adam, et al. “Nonoptimal Gene Expression Creates Latent Potential for Antibiotic Resistance.” Molecular Biology and Evolution, vol. 35, no. 11, Oxford University Press, 2018, pp. 2669–84, doi:10.1093/molbev/msy163."},"publication":"Molecular Biology and Evolution","date_published":"2018-08-28T00:00:00Z","type":"journal_article","issue":"11","abstract":[{"text":"Bacteria regulate genes to survive antibiotic stress, but regulation can be far from perfect. When regulation is not optimal, mutations that change gene expression can contribute to antibiotic resistance. It is not systematically understood to what extent natural gene regulation is or is not optimal for distinct antibiotics, and how changes in expression of specific genes quantitatively affect antibiotic resistance. Here we discover a simple quantitative relation between fitness, gene expression, and antibiotic potency, which rationalizes our observation that a multitude of genes and even innate antibiotic defense mechanisms have expression that is critically nonoptimal under antibiotic treatment. First, we developed a pooled-strain drug-diffusion assay and screened Escherichia coli overexpression and knockout libraries, finding that resistance to a range of 31 antibiotics could result from changing expression of a large and functionally diverse set of genes, in a primarily but not exclusively drug-specific manner. Second, by synthetically controlling the expression of single-drug and multidrug resistance genes, we observed that their fitness-expression functions changed dramatically under antibiotic treatment in accordance with a log-sensitivity relation. Thus, because many genes are nonoptimally expressed under antibiotic treatment, many regulatory mutations can contribute to resistance by altering expression and by activating latent defenses.","lang":"eng"}],"intvolume":" 35","status":"public","title":"Nonoptimal gene expression creates latent potential for antibiotic resistance","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"19","oa_version":"Submitted Version"},{"article_processing_charge":"No","day":"08","month":"11","scopus_import":"1","date_published":"2018-11-08T00:00:00Z","doi":"10.3791/58585","language":[{"iso":"eng"}],"citation":{"ista":"Masís J, Mankus D, Wolff S, Guitchounts G, Jösch MA, Cox D. 2018. A micro-CT-based method for characterising lesions and locating electrodes in small animal brains. Journal of visualized experiments. 141.","apa":"Masís, J., Mankus, D., Wolff, S., Guitchounts, G., Jösch, M. A., & Cox, D. (2018). A micro-CT-based method for characterising lesions and locating electrodes in small animal brains. Journal of Visualized Experiments. MyJove Corporation. https://doi.org/10.3791/58585","ieee":"J. Masís, D. Mankus, S. Wolff, G. Guitchounts, M. A. Jösch, and D. Cox, “A micro-CT-based method for characterising lesions and locating electrodes in small animal brains,” Journal of visualized experiments, vol. 141. MyJove Corporation, 2018.","ama":"Masís J, Mankus D, Wolff S, Guitchounts G, Jösch MA, Cox D. A micro-CT-based method for characterising lesions and locating electrodes in small animal brains. Journal of visualized experiments. 2018;141. doi:10.3791/58585","chicago":"Masís, Javier, David Mankus, Steffen Wolff, Grigori Guitchounts, Maximilian A Jösch, and David Cox. “A Micro-CT-Based Method for Characterising Lesions and Locating Electrodes in Small Animal Brains.” Journal of Visualized Experiments. MyJove Corporation, 2018. https://doi.org/10.3791/58585.","mla":"Masís, Javier, et al. “A Micro-CT-Based Method for Characterising Lesions and Locating Electrodes in Small Animal Brains.” Journal of Visualized Experiments, vol. 141, MyJove Corporation, 2018, doi:10.3791/58585.","short":"J. Masís, D. Mankus, S. Wolff, G. Guitchounts, M.A. Jösch, D. Cox, Journal of Visualized Experiments 141 (2018)."},"external_id":{"isi":["000456469400103"]},"publication":"Journal of visualized experiments","quality_controlled":"1","isi":1,"publist_id":"8050","abstract":[{"lang":"eng","text":"Lesion and electrode location verification are traditionally done via histological examination of stained brain slices, a time-consuming procedure that requires manual estimation. Here, we describe a simple, straightforward method for quantifying lesions and locating electrodes in the brain that is less laborious and yields more detailed results. Whole brains are stained with osmium tetroxide, embedded in resin, and imaged with a micro-CT scanner. The scans result in 3D digital volumes of the brains with resolutions and virtual section thicknesses dependent on the sample size (12-15 and 5-6 µm per voxel for rat and zebra finch brains, respectively). Surface and deep lesions can be characterized, and single tetrodes, tetrode arrays, electrolytic lesions, and silicon probes can also be localized. Free and proprietary software allows experimenters to examine the sample volume from any plane and segment the volume manually or automatically. Because this method generates whole brain volume, lesions and electrodes can be quantified to a much higher degree than in current methods, which will help standardize comparisons within and across studies."}],"type":"journal_article","author":[{"full_name":"Masís, Javier","last_name":"Masís","first_name":"Javier"},{"last_name":"Mankus","first_name":"David","full_name":"Mankus, David"},{"full_name":"Wolff, Steffen","last_name":"Wolff","first_name":"Steffen"},{"first_name":"Grigori","last_name":"Guitchounts","full_name":"Guitchounts, Grigori"},{"full_name":"Jösch, Maximilian A","orcid":"0000-0002-3937-1330","id":"2BD278E6-F248-11E8-B48F-1D18A9856A87","last_name":"Jösch","first_name":"Maximilian A"},{"first_name":"David","last_name":"Cox","full_name":"Cox, David"}],"oa_version":"None","volume":141,"date_updated":"2023-10-17T11:49:25Z","date_created":"2018-12-11T11:44:07Z","_id":"6","year":"2018","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 141","publisher":"MyJove Corporation","department":[{"_id":"MaJö"}],"title":"A micro-CT-based method for characterising lesions and locating electrodes in small animal brains","status":"public","publication_status":"published"},{"department":[{"_id":"SyCr"}],"publisher":"Zenodo","title":"Social network plasticity decreases disease transmission in a eusocial insect","ddc":["570"],"status":"public","_id":"13055","year":"2018","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","date_created":"2023-05-23T13:24:51Z","date_updated":"2023-10-17T11:50:04Z","related_material":{"record":[{"relation":"used_in_publication","status":"public","id":"7"}]},"author":[{"first_name":"Nathalie","last_name":"Stroeymeyt","full_name":"Stroeymeyt, Nathalie"},{"first_name":"Anna V","last_name":"Grasse","id":"406F989C-F248-11E8-B48F-1D18A9856A87","full_name":"Grasse, Anna V"},{"first_name":"Alessandro","last_name":"Crespi","full_name":"Crespi, Alessandro"},{"full_name":"Mersch, Danielle","last_name":"Mersch","first_name":"Danielle"},{"full_name":"Cremer, Sylvia","last_name":"Cremer","first_name":"Sylvia","orcid":"0000-0002-2193-3868","id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Keller, Laurent","last_name":"Keller","first_name":"Laurent"}],"type":"research_data_reference","license":"https://creativecommons.org/licenses/by/4.0/","abstract":[{"lang":"eng","text":"Dataset for manuscript 'Social network plasticity decreases disease transmission in a eusocial insect'\r\nCompared to previous versions: - raw image files added\r\n - correction of URLs within README.txt file\r\n"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"citation":{"chicago":"Stroeymeyt, Nathalie, Anna V Grasse, Alessandro Crespi, Danielle Mersch, Sylvia Cremer, and Laurent Keller. “Social Network Plasticity Decreases Disease Transmission in a Eusocial Insect.” Zenodo, 2018. https://doi.org/10.5281/ZENODO.1322669.","mla":"Stroeymeyt, Nathalie, et al. Social Network Plasticity Decreases Disease Transmission in a Eusocial Insect. Zenodo, 2018, doi:10.5281/ZENODO.1322669.","short":"N. Stroeymeyt, A.V. Grasse, A. Crespi, D. Mersch, S. Cremer, L. Keller, (2018).","ista":"Stroeymeyt N, Grasse AV, Crespi A, Mersch D, Cremer S, Keller L. 2018. Social network plasticity decreases disease transmission in a eusocial insect, Zenodo, 10.5281/ZENODO.1322669.","apa":"Stroeymeyt, N., Grasse, A. V., Crespi, A., Mersch, D., Cremer, S., & Keller, L. (2018). Social network plasticity decreases disease transmission in a eusocial insect. Zenodo. https://doi.org/10.5281/ZENODO.1322669","ieee":"N. Stroeymeyt, A. V. Grasse, A. Crespi, D. Mersch, S. Cremer, and L. Keller, “Social network plasticity decreases disease transmission in a eusocial insect.” Zenodo, 2018.","ama":"Stroeymeyt N, Grasse AV, Crespi A, Mersch D, Cremer S, Keller L. Social network plasticity decreases disease transmission in a eusocial insect. 2018. doi:10.5281/ZENODO.1322669"},"main_file_link":[{"url":"https://doi.org/10.5281/zenodo.1480665","open_access":"1"}],"date_published":"2018-10-23T00:00:00Z","doi":"10.5281/ZENODO.1322669","article_processing_charge":"No","day":"23","month":"10"},{"date_published":"2018-10-20T00:00:00Z","publication":"Optica","citation":{"short":"G. Botello, F. Sedlmeir, A.R. Rueda Sanchez, K. Abdalmalak, E. Brown, G. Leuchs, S. Preu, D. Segovia Vargas, D. Strekalov, L. Munoz, H. Schwefel, Optica 5 (2018) 1210–1219.","mla":"Botello, Gabriel, et al. “Sensitivity Limits of Millimeter-Wave Photonic Radiometers Based on Efficient Electro-Optic Upconverters.” Optica, vol. 5, no. 10, 2018, pp. 1210–19, doi:10.1364/OPTICA.5.001210.","chicago":"Botello, Gabriel, Florian Sedlmeir, Alfredo R Rueda Sanchez, Kerlos Abdalmalak, Elliott Brown, Gerd Leuchs, Sascha Preu, et al. “Sensitivity Limits of Millimeter-Wave Photonic Radiometers Based on Efficient Electro-Optic Upconverters.” Optica, 2018. https://doi.org/10.1364/OPTICA.5.001210.","ama":"Botello G, Sedlmeir F, Rueda Sanchez AR, et al. Sensitivity limits of millimeter-wave photonic radiometers based on efficient electro-optic upconverters. Optica. 2018;5(10):1210-1219. doi:10.1364/OPTICA.5.001210","apa":"Botello, G., Sedlmeir, F., Rueda Sanchez, A. R., Abdalmalak, K., Brown, E., Leuchs, G., … Schwefel, H. (2018). Sensitivity limits of millimeter-wave photonic radiometers based on efficient electro-optic upconverters. Optica. https://doi.org/10.1364/OPTICA.5.001210","ieee":"G. Botello et al., “Sensitivity limits of millimeter-wave photonic radiometers based on efficient electro-optic upconverters,” Optica, vol. 5, no. 10. pp. 1210–1219, 2018.","ista":"Botello G, Sedlmeir F, Rueda Sanchez AR, Abdalmalak K, Brown E, Leuchs G, Preu S, Segovia Vargas D, Strekalov D, Munoz L, Schwefel H. 2018. Sensitivity limits of millimeter-wave photonic radiometers based on efficient electro-optic upconverters. Optica. 5(10), 1210–1219."},"article_type":"original","page":"1210 - 1219","day":"20","article_processing_charge":"No","scopus_import":"1","oa_version":"Published Version","_id":"22","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","title":"Sensitivity limits of millimeter-wave photonic radiometers based on efficient electro-optic upconverters","intvolume":" 5","abstract":[{"lang":"eng","text":"Conventional ultra-high sensitivity detectors in the millimeter-wave range are usually cooled as their own thermal noise at room temperature would mask the weak received radiation. The need for cryogenic systems increases the cost and complexity of the instruments, hindering the development of, among others, airborne and space applications. In this work, the nonlinear parametric upconversion of millimeter-wave radiation to the optical domain inside high-quality (Q) lithium niobate whispering-gallery mode (WGM) resonators is proposed for ultra-low noise detection. We experimentally demonstrate coherent upconversion of millimeter-wave signals to a 1550 nm telecom carrier, with a photon conversion efficiency surpassing the state-of-the-art by 2 orders of magnitude. Moreover, a theoretical model shows that the thermal equilibrium of counterpropagating WGMs is broken by overcoupling the millimeter-wave WGM, effectively cooling the upconverted mode and allowing ultra-low noise detection. By theoretically estimating the sensitivity of a correlation radiometer based on the presented scheme, it is found that room-temperature radiometers with better sensitivity than state-of-the-art high-electron-mobility transistor (HEMT)-based radiometers can be designed. This detection paradigm can be used to develop room-temperature instrumentation for radio astronomy, earth observation, planetary missions, and imaging systems."}],"issue":"10","type":"journal_article","doi":"10.1364/OPTICA.5.001210","language":[{"iso":"eng"}],"oa":1,"main_file_link":[{"url":"www.doi.org/10.1364/OPTICA.5.001210 ","open_access":"1"}],"external_id":{"isi":["000447853100007"]},"isi":1,"quality_controlled":"1","month":"10","publication_identifier":{"issn":["23342536"]},"author":[{"last_name":"Botello","first_name":"Gabriel","full_name":"Botello, Gabriel"},{"full_name":"Sedlmeir, Florian","last_name":"Sedlmeir","first_name":"Florian"},{"full_name":"Rueda Sanchez, Alfredo R","id":"3B82B0F8-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6249-5860","first_name":"Alfredo R","last_name":"Rueda Sanchez"},{"last_name":"Abdalmalak","first_name":"Kerlos","full_name":"Abdalmalak, Kerlos"},{"full_name":"Brown, Elliott","last_name":"Brown","first_name":"Elliott"},{"full_name":"Leuchs, Gerd","last_name":"Leuchs","first_name":"Gerd"},{"last_name":"Preu","first_name":"Sascha","full_name":"Preu, Sascha"},{"first_name":"Daniel","last_name":"Segovia Vargas","full_name":"Segovia Vargas, Daniel"},{"last_name":"Strekalov","first_name":"Dmitry","full_name":"Strekalov, Dmitry"},{"first_name":"Luis","last_name":"Munoz","full_name":"Munoz, Luis"},{"full_name":"Schwefel, Harald","first_name":"Harald","last_name":"Schwefel"}],"date_updated":"2023-10-17T12:12:40Z","date_created":"2018-12-11T11:44:12Z","volume":5,"year":"2018","publication_status":"published","department":[{"_id":"JoFi"}],"publist_id":"8033"},{"abstract":[{"text":"Recently, contract-based design has been proposed as an “orthogonal” approach that complements system design methodologies proposed so far to cope with the complexity of system design. Contract-based design provides a rigorous scaffolding for verification, analysis, abstraction/refinement, and even synthesis. A number of results have been obtained in this domain but a unified treatment of the topic that can help put contract-based design in perspective was missing. This monograph intends to provide such a treatment where contracts are precisely defined and characterized so that they can be used in design methodologies with no ambiguity. In particular, this monograph identifies the essence of complex system design using contracts through a mathematical “meta-theory”, where all the properties of the methodology are derived from a very abstract and generic notion of contract. We show that the meta-theory provides deep and illuminating links with existing contract and interface theories, as well as guidelines for designing new theories. Our study encompasses contracts for both software and systems, with emphasis on the latter. We illustrate the use of contracts with two examples: requirement engineering for a parking garage management, and the development of contracts for timing and scheduling in the context of the Autosar methodology in use in the automotive sector.","lang":"eng"}],"issue":"2-3","type":"journal_article","oa_version":"Submitted Version","status":"public","title":"Contracts for system design","intvolume":" 12","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"5677","day":"01","article_processing_charge":"No","scopus_import":"1","date_published":"2018-05-01T00:00:00Z","article_type":"original","page":"124-400","publication":"Foundations and Trends in Electronic Design Automation","citation":{"ista":"Benveniste A, Nickovic D, Caillaud B, Passerone R, Raclet JB, Reinkemeier P, Sangiovanni-Vincentelli A, Damm W, Henzinger TA, Larsen KG. 2018. Contracts for system design. Foundations and Trends in Electronic Design Automation. 12(2–3), 124–400.","ieee":"A. Benveniste et al., “Contracts for system design,” Foundations and Trends in Electronic Design Automation, vol. 12, no. 2–3. Now Publishers, pp. 124–400, 2018.","apa":"Benveniste, A., Nickovic, D., Caillaud, B., Passerone, R., Raclet, J. B., Reinkemeier, P., … Larsen, K. G. (2018). Contracts for system design. Foundations and Trends in Electronic Design Automation. Now Publishers. https://doi.org/10.1561/1000000053","ama":"Benveniste A, Nickovic D, Caillaud B, et al. Contracts for system design. Foundations and Trends in Electronic Design Automation. 2018;12(2-3):124-400. doi:10.1561/1000000053","chicago":"Benveniste, Albert, Dejan Nickovic, Benoît Caillaud, Roberto Passerone, Jean Baptiste Raclet, Philipp Reinkemeier, Alberto Sangiovanni-Vincentelli, Werner Damm, Thomas A Henzinger, and Kim G. Larsen. “Contracts for System Design.” Foundations and Trends in Electronic Design Automation. Now Publishers, 2018. https://doi.org/10.1561/1000000053.","mla":"Benveniste, Albert, et al. “Contracts for System Design.” Foundations and Trends in Electronic Design Automation, vol. 12, no. 2–3, Now Publishers, 2018, pp. 124–400, doi:10.1561/1000000053.","short":"A. Benveniste, D. Nickovic, B. Caillaud, R. Passerone, J.B. Raclet, P. Reinkemeier, A. Sangiovanni-Vincentelli, W. Damm, T.A. Henzinger, K.G. Larsen, Foundations and Trends in Electronic Design Automation 12 (2018) 124–400."},"date_updated":"2023-10-17T11:53:09Z","date_created":"2018-12-16T22:59:19Z","volume":12,"author":[{"last_name":"Benveniste","first_name":"Albert","full_name":"Benveniste, Albert"},{"full_name":"Nickovic, Dejan","last_name":"Nickovic","first_name":"Dejan"},{"full_name":"Caillaud, Benoît","first_name":"Benoît","last_name":"Caillaud"},{"full_name":"Passerone, Roberto","first_name":"Roberto","last_name":"Passerone"},{"first_name":"Jean Baptiste","last_name":"Raclet","full_name":"Raclet, Jean Baptiste"},{"full_name":"Reinkemeier, Philipp","first_name":"Philipp","last_name":"Reinkemeier"},{"last_name":"Sangiovanni-Vincentelli","first_name":"Alberto","full_name":"Sangiovanni-Vincentelli, Alberto"},{"full_name":"Damm, Werner","last_name":"Damm","first_name":"Werner"},{"full_name":"Henzinger, Thomas A","orcid":"0000−0002−2985−7724","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","last_name":"Henzinger","first_name":"Thomas A"},{"full_name":"Larsen, Kim G.","first_name":"Kim G.","last_name":"Larsen"}],"publication_status":"published","publisher":"Now Publishers","department":[{"_id":"ToHe"}],"year":"2018","month":"05","publication_identifier":{"issn":["1551-3939"]},"language":[{"iso":"eng"}],"doi":"10.1561/1000000053","quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://hal.inria.fr/hal-00757488/"}],"oa":1},{"day":"01","article_processing_charge":"No","scopus_import":"1","date_published":"2018-02-01T00:00:00Z","publication":"Optics Letters","citation":{"ista":"Midya B, Konotop V. 2018. Coherent-perfect-absorber and laser for bound states in a continuum. Optics Letters. 43(3), 607–610.","apa":"Midya, B., & Konotop, V. (2018). Coherent-perfect-absorber and laser for bound states in a continuum. Optics Letters. Optica Publishing Group. https://doi.org/10.1364/OL.43.000607","ieee":"B. Midya and V. Konotop, “Coherent-perfect-absorber and laser for bound states in a continuum,” Optics Letters, vol. 43, no. 3. Optica Publishing Group, pp. 607–610, 2018.","ama":"Midya B, Konotop V. Coherent-perfect-absorber and laser for bound states in a continuum. Optics Letters. 2018;43(3):607-610. doi:10.1364/OL.43.000607","chicago":"Midya, Bikashkali, and Vladimir Konotop. “Coherent-Perfect-Absorber and Laser for Bound States in a Continuum.” Optics Letters. Optica Publishing Group, 2018. https://doi.org/10.1364/OL.43.000607.","mla":"Midya, Bikashkali, and Vladimir Konotop. “Coherent-Perfect-Absorber and Laser for Bound States in a Continuum.” Optics Letters, vol. 43, no. 3, Optica Publishing Group, 2018, pp. 607–10, doi:10.1364/OL.43.000607.","short":"B. Midya, V. Konotop, Optics Letters 43 (2018) 607–610."},"page":"607 - 610","abstract":[{"text":"It is shown that two fundamentally different phenomena, the bound states in continuum and the spectral singularity (or time-reversed spectral singularity), can occur simultaneously. This can be achieved in a rectangular core dielectric waveguide with an embedded active (or absorbing) layer. In such a system a two-dimensional bound state in a continuum is created in the plane of a waveguide cross section, and it is emitted or absorbed along the waveguide core. The idea can be used for experimental implementation of a laser or a coherent-perfect-absorber for a photonic bound state that resides in a continuous spectrum.","lang":"eng"}],"issue":"3","type":"journal_article","oa_version":"Preprint","_id":"435","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Coherent-perfect-absorber and laser for bound states in a continuum","status":"public","intvolume":" 43","month":"02","doi":"10.1364/OL.43.000607","language":[{"iso":"eng"}],"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1711.01986"}],"external_id":{"isi":["000423776600066"],"arxiv":["1711.01986"]},"oa":1,"quality_controlled":"1","isi":1,"project":[{"grant_number":"291734","_id":"25681D80-B435-11E9-9278-68D0E5697425","name":"International IST Postdoc Fellowship Programme","call_identifier":"FP7"}],"publist_id":"7388","ec_funded":1,"author":[{"full_name":"Midya, Bikashkali","id":"456187FC-F248-11E8-B48F-1D18A9856A87","first_name":"Bikashkali","last_name":"Midya"},{"last_name":"Konotop","first_name":"Vladimir","full_name":"Konotop, Vladimir"}],"date_created":"2018-12-11T11:46:27Z","date_updated":"2023-10-17T12:15:06Z","volume":43,"year":"2018","acknowledgement":"Seventh Framework Programme (FP7) People: Marie-Curie Actions (PEOPLE) (291734). B. M. acknowledges the financial support by the People Programme (Marie Curie Actions) of the European Union’s Seventh Framework Programme (FP7/ 2007-2013) under REA.","publication_status":"published","department":[{"_id":"MiLe"}],"publisher":"Optica Publishing Group"},{"publication_status":"published","publisher":"PeerJ","department":[{"_id":"BeVi"},{"_id":"NiBa"}],"year":"2018","date_created":"2018-12-11T11:44:50Z","date_updated":"2023-10-17T12:25:28Z","volume":2018,"author":[{"full_name":"Fraisse, Christelle","first_name":"Christelle","last_name":"Fraisse","id":"32DF5794-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8441-5075"},{"last_name":"Roux","first_name":"Camille","full_name":"Roux, Camille"},{"first_name":"Pierre","last_name":"Gagnaire","full_name":"Gagnaire, Pierre"},{"full_name":"Romiguier, Jonathan","first_name":"Jonathan","last_name":"Romiguier"},{"first_name":"Nicolas","last_name":"Faivre","full_name":"Faivre, Nicolas"},{"first_name":"John","last_name":"Welch","full_name":"Welch, John"},{"first_name":"Nicolas","last_name":"Bierne","full_name":"Bierne, Nicolas"}],"article_number":"30083438","file_date_updated":"2020-07-14T12:44:48Z","publist_id":"7784","isi":1,"quality_controlled":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"isi":["000440484800002"]},"oa":1,"language":[{"iso":"eng"}],"doi":"10.7717/peerj.5198","month":"07","ddc":["576"],"title":"The divergence history of European blue mussel species reconstructed from Approximate Bayesian Computation: The effects of sequencing techniques and sampling strategies","status":"public","intvolume":" 2018","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"139","oa_version":"Published Version","file":[{"date_updated":"2020-07-14T12:44:48Z","date_created":"2018-12-18T09:42:11Z","checksum":"7d55ae22598a1c70759cd671600cff53","file_id":"5739","relation":"main_file","creator":"dernst","file_size":1480792,"content_type":"application/pdf","file_name":"2018_PeerJ_Fraisse.pdf","access_level":"open_access"}],"type":"journal_article","abstract":[{"text":"Genome-scale diversity data are increasingly available in a variety of biological systems, and can be used to reconstruct the past evolutionary history of species divergence. However, extracting the full demographic information from these data is not trivial, and requires inferential methods that account for the diversity of coalescent histories throughout the genome. Here, we evaluate the potential and limitations of one such approach. We reexamine a well-known system of mussel sister species, using the joint site frequency spectrum (jSFS) of synonymousmutations computed either fromexome capture or RNA-seq, in an Approximate Bayesian Computation (ABC) framework. We first assess the best sampling strategy (number of: individuals, loci, and bins in the jSFS), and show that model selection is robust to variation in the number of individuals and loci. In contrast, different binning choices when summarizing the jSFS, strongly affect the results: including classes of low and high frequency shared polymorphisms can more effectively reveal recent migration events. We then take advantage of the flexibility of ABC to compare more realistic models of speciation, including variation in migration rates through time (i.e., periodic connectivity) and across genes (i.e., genome-wide heterogeneity in migration rates). We show that these models were consistently selected as the most probable, suggesting that mussels have experienced a complex history of gene flow during divergence and that the species boundary is semi-permeable. Our work provides a comprehensive evaluation of ABC demographic inference in mussels based on the coding jSFS, and supplies guidelines for employing different sequencing techniques and sampling strategies. We emphasize, perhaps surprisingly, that inferences are less limited by the volume of data, than by the way in which they are analyzed.","lang":"eng"}],"issue":"7","publication":"PeerJ","citation":{"short":"C. Fraisse, C. Roux, P. Gagnaire, J. Romiguier, N. Faivre, J. Welch, N. Bierne, PeerJ 2018 (2018).","mla":"Fraisse, Christelle, et al. “The Divergence History of European Blue Mussel Species Reconstructed from Approximate Bayesian Computation: The Effects of Sequencing Techniques and Sampling Strategies.” PeerJ, vol. 2018, no. 7, 30083438, PeerJ, 2018, doi:10.7717/peerj.5198.","chicago":"Fraisse, Christelle, Camille Roux, Pierre Gagnaire, Jonathan Romiguier, Nicolas Faivre, John Welch, and Nicolas Bierne. “The Divergence History of European Blue Mussel Species Reconstructed from Approximate Bayesian Computation: The Effects of Sequencing Techniques and Sampling Strategies.” PeerJ. PeerJ, 2018. https://doi.org/10.7717/peerj.5198.","ama":"Fraisse C, Roux C, Gagnaire P, et al. The divergence history of European blue mussel species reconstructed from Approximate Bayesian Computation: The effects of sequencing techniques and sampling strategies. PeerJ. 2018;2018(7). doi:10.7717/peerj.5198","ieee":"C. Fraisse et al., “The divergence history of European blue mussel species reconstructed from Approximate Bayesian Computation: The effects of sequencing techniques and sampling strategies,” PeerJ, vol. 2018, no. 7. PeerJ, 2018.","apa":"Fraisse, C., Roux, C., Gagnaire, P., Romiguier, J., Faivre, N., Welch, J., & Bierne, N. (2018). The divergence history of European blue mussel species reconstructed from Approximate Bayesian Computation: The effects of sequencing techniques and sampling strategies. PeerJ. PeerJ. https://doi.org/10.7717/peerj.5198","ista":"Fraisse C, Roux C, Gagnaire P, Romiguier J, Faivre N, Welch J, Bierne N. 2018. The divergence history of European blue mussel species reconstructed from Approximate Bayesian Computation: The effects of sequencing techniques and sampling strategies. PeerJ. 2018(7), 30083438."},"date_published":"2018-07-30T00:00:00Z","scopus_import":"1","day":"30","has_accepted_license":"1","article_processing_charge":"No"},{"file":[{"date_updated":"2020-07-14T12:46:06Z","date_created":"2018-12-17T10:46:06Z","checksum":"3334886c4b39678db4c4b74299ca14ba","file_id":"5692","relation":"main_file","creator":"dernst","content_type":"application/pdf","file_size":1328344,"file_name":"2018_PeerJ_Bertl.pdf","access_level":"open_access"}],"oa_version":"Published Version","_id":"33","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 2018","ddc":["576"],"title":"Can secondary contact following range expansion be distinguished from barriers to gene flow?","status":"public","issue":"10","abstract":[{"lang":"eng","text":"Secondary contact is the reestablishment of gene flow between sister populations that have diverged. For instance, at the end of the Quaternary glaciations in Europe, secondary contact occurred during the northward expansion of the populations which had found refugia in the southern peninsulas. With the advent of multi-locus markers, secondary contact can be investigated using various molecular signatures including gradients of allele frequency, admixture clines, and local increase of genetic differentiation. We use coalescent simulations to investigate if molecular data provide enough information to distinguish between secondary contact following range expansion and an alternative evolutionary scenario consisting of a barrier to gene flow in an isolation-by-distance model. We find that an excess of linkage disequilibrium and of genetic diversity at the suture zone is a unique signature of secondary contact. We also find that the directionality index ψ, which was proposed to study range expansion, is informative to distinguish between the two hypotheses. However, although evidence for secondary contact is usually conveyed by statistics related to admixture coefficients, we find that they can be confounded by isolation-by-distance. We recommend to account for the spatial repartition of individuals when investigating secondary contact in order to better reflect the complex spatio-temporal evolution of populations and species."}],"type":"journal_article","date_published":"2018-10-01T00:00:00Z","citation":{"ista":"Bertl J, Ringbauer H, Blum M. 2018. Can secondary contact following range expansion be distinguished from barriers to gene flow? PeerJ. 2018(10), e5325.","ieee":"J. Bertl, H. Ringbauer, and M. Blum, “Can secondary contact following range expansion be distinguished from barriers to gene flow?,” PeerJ, vol. 2018, no. 10. PeerJ, 2018.","apa":"Bertl, J., Ringbauer, H., & Blum, M. (2018). Can secondary contact following range expansion be distinguished from barriers to gene flow? PeerJ. PeerJ. https://doi.org/10.7717/peerj.5325","ama":"Bertl J, Ringbauer H, Blum M. Can secondary contact following range expansion be distinguished from barriers to gene flow? PeerJ. 2018;2018(10). doi:10.7717/peerj.5325","chicago":"Bertl, Johanna, Harald Ringbauer, and Michaël Blum. “Can Secondary Contact Following Range Expansion Be Distinguished from Barriers to Gene Flow?” PeerJ. PeerJ, 2018. https://doi.org/10.7717/peerj.5325.","mla":"Bertl, Johanna, et al. “Can Secondary Contact Following Range Expansion Be Distinguished from Barriers to Gene Flow?” PeerJ, vol. 2018, no. 10, e5325, PeerJ, 2018, doi:10.7717/peerj.5325.","short":"J. Bertl, H. Ringbauer, M. Blum, PeerJ 2018 (2018)."},"publication":"PeerJ","has_accepted_license":"1","article_processing_charge":"No","day":"01","scopus_import":"1","author":[{"first_name":"Johanna","last_name":"Bertl","full_name":"Bertl, Johanna"},{"id":"417FCFF4-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4884-9682","first_name":"Harald","last_name":"Ringbauer","full_name":"Ringbauer, Harald"},{"first_name":"Michaël","last_name":"Blum","full_name":"Blum, Michaël"}],"volume":2018,"date_updated":"2023-10-17T12:24:43Z","date_created":"2018-12-11T11:44:16Z","pmid":1,"acknowledgement":"Johanna Bertl was supported by the Vienna Graduate School of Population Genetics (Austrian Science Fund (FWF): W1225-B20) and worked on this project while employed at the Department of Statistics and Operations Research, University of Vienna, Austria. This article was developed in the framework of the Grenoble Alpes Data Institute, which is supported by the French National Research Agency under the “Investissments d’avenir” program (ANR-15-IDEX-02).","year":"2018","department":[{"_id":"NiBa"}],"publisher":"PeerJ","publication_status":"published","publist_id":"8022","file_date_updated":"2020-07-14T12:46:06Z","article_number":"e5325","doi":"10.7717/peerj.5325","language":[{"iso":"eng"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"external_id":{"pmid":["30294507"],"isi":["000447204400001"]},"quality_controlled":"1","isi":1,"month":"10"},{"quality_controlled":"1","isi":1,"project":[{"call_identifier":"H2020","name":"Tracing Evolution of Auxin Transport and Polarity in Plants","grant_number":"742985","_id":"261099A6-B435-11E9-9278-68D0E5697425"}],"external_id":{"isi":["000454576600017"],"pmid":["30518833"]},"main_file_link":[{"open_access":"1","url":"https://www.ncbi.nlm.nih.gov/pubmed/30518833"}],"oa":1,"language":[{"iso":"eng"}],"doi":"10.1038/s41477-018-0318-3","month":"12","publication_identifier":{"issn":["2055-0278"]},"publication_status":"published","department":[{"_id":"JiFr"}],"publisher":"Nature Research","year":"2018","pmid":1,"date_created":"2018-12-16T22:59:18Z","date_updated":"2023-10-17T12:19:28Z","volume":4,"author":[{"full_name":"Glanc, Matous","first_name":"Matous","last_name":"Glanc","id":"1AE1EA24-02D0-11E9-9BAA-DAF4881429F2","orcid":"0000-0003-0619-7783"},{"first_name":"Matyas","last_name":"Fendrych","id":"43905548-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-9767-8699","full_name":"Fendrych, Matyas"},{"id":"4159519E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8302-7596","first_name":"Jirí","last_name":"Friml","full_name":"Friml, Jirí"}],"ec_funded":1,"page":"1082-1088","publication":"Nature Plants","citation":{"apa":"Glanc, M., Fendrych, M., & Friml, J. (2018). Mechanistic framework for cell-intrinsic re-establishment of PIN2 polarity after cell division. Nature Plants. Nature Research. https://doi.org/10.1038/s41477-018-0318-3","ieee":"M. Glanc, M. Fendrych, and J. Friml, “Mechanistic framework for cell-intrinsic re-establishment of PIN2 polarity after cell division,” Nature Plants, vol. 4, no. 12. Nature Research, pp. 1082–1088, 2018.","ista":"Glanc M, Fendrych M, Friml J. 2018. Mechanistic framework for cell-intrinsic re-establishment of PIN2 polarity after cell division. Nature Plants. 4(12), 1082–1088.","ama":"Glanc M, Fendrych M, Friml J. Mechanistic framework for cell-intrinsic re-establishment of PIN2 polarity after cell division. Nature Plants. 2018;4(12):1082-1088. doi:10.1038/s41477-018-0318-3","chicago":"Glanc, Matous, Matyas Fendrych, and Jiří Friml. “Mechanistic Framework for Cell-Intrinsic Re-Establishment of PIN2 Polarity after Cell Division.” Nature Plants. Nature Research, 2018. https://doi.org/10.1038/s41477-018-0318-3.","short":"M. Glanc, M. Fendrych, J. Friml, Nature Plants 4 (2018) 1082–1088.","mla":"Glanc, Matous, et al. “Mechanistic Framework for Cell-Intrinsic Re-Establishment of PIN2 Polarity after Cell Division.” Nature Plants, vol. 4, no. 12, Nature Research, 2018, pp. 1082–88, doi:10.1038/s41477-018-0318-3."},"date_published":"2018-12-03T00:00:00Z","scopus_import":"1","day":"03","article_processing_charge":"No","title":"Mechanistic framework for cell-intrinsic re-establishment of PIN2 polarity after cell division","status":"public","intvolume":" 4","_id":"5673","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Submitted Version","type":"journal_article","abstract":[{"text":"Cell polarity, manifested by the localization of proteins to distinct polar plasma membrane domains, is a key prerequisite of multicellular life. In plants, PIN auxin transporters are prominent polarity markers crucial for a plethora of developmental processes. Cell polarity mechanisms in plants are distinct from other eukaryotes and still largely elusive. In particular, how the cell polarities are propagated and maintained following cell division remains unknown. Plant cytokinesis is orchestrated by the cell plate—a transient centrifugally growing endomembrane compartment ultimately forming the cross wall1. Trafficking of polar membrane proteins is typically redirected to the cell plate, and these will consequently have opposite polarity in at least one of the daughter cells2–5. Here, we provide mechanistic insights into post-cytokinetic re-establishment of cell polarity as manifested by the apical, polar localization of PIN2. We show that the apical domain is defined in a cell-intrinsic manner and that re-establishment of PIN2 localization to this domain requires de novo protein secretion and endocytosis, but not basal-to-apical transcytosis. Furthermore, we identify a PINOID-related kinase WAG1, which phosphorylates PIN2 in vitro6 and is transcriptionally upregulated specifically in dividing cells, as a crucial regulator of post-cytokinetic PIN2 polarity re-establishment.","lang":"eng"}],"issue":"12"},{"publist_id":"7715","ec_funded":1,"file_date_updated":"2020-07-14T12:45:22Z","article_number":"20180073","volume":15,"date_created":"2018-12-11T11:45:09Z","date_updated":"2023-10-18T06:36:00Z","related_material":{"link":[{"relation":"supplementary_material","url":"https://dx.doi.org/10.6084/m9.figshare.c.4028971"}],"record":[{"status":"public","relation":"research_data","id":"9814"}]},"author":[{"first_name":"Rasmus","last_name":"Ibsen-Jensen","id":"3B699956-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-4783-0389","full_name":"Ibsen-Jensen, Rasmus"},{"full_name":"Tkadlec, Josef","last_name":"Tkadlec","first_name":"Josef","orcid":"0000-0002-1097-9684","id":"3F24CCC8-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Chatterjee, Krishnendu","orcid":"0000-0002-4561-241X","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","last_name":"Chatterjee","first_name":"Krishnendu"},{"last_name":"Nowak","first_name":"Martin","full_name":"Nowak, Martin"}],"publisher":"The Royal Society","department":[{"_id":"KrCh"}],"publication_status":"published","pmid":1,"year":"2018","publication_identifier":{"eissn":["1742-5662"]},"month":"03","language":[{"iso":"eng"}],"doi":"10.1098/rsif.2018.0073","project":[{"call_identifier":"FP7","name":"Quantitative Graph Games: Theory and Applications","_id":"2581B60A-B435-11E9-9278-68D0E5697425","grant_number":"279307"},{"_id":"2584A770-B435-11E9-9278-68D0E5697425","grant_number":"P 23499-N23","name":"Modern Graph Algorithmic Techniques in Formal Verification","call_identifier":"FWF"},{"name":"Rigorous Systems Engineering","call_identifier":"FWF","_id":"25832EC2-B435-11E9-9278-68D0E5697425","grant_number":"S 11407_N23"}],"quality_controlled":"1","isi":1,"external_id":{"isi":["000428576200023"],"pmid":["29593089"]},"oa":1,"issue":"140","abstract":[{"text":"We consider a class of students learning a language from a teacher. The situation can be interpreted as a group of child learners receiving input from the linguistic environment. The teacher provides sample sentences. The students try to learn the grammar from the teacher. In addition to just listening to the teacher, the students can also communicate with each other. The students hold hypotheses about the grammar and change them if they receive counter evidence. The process stops when all students have converged to the correct grammar. We study how the time to convergence depends on the structure of the classroom by introducing and evaluating various complexity measures. We find that structured communication between students, although potentially introducing confusion, can greatly reduce some of the complexity measures. Our theory can also be interpreted as applying to the scientific process, where nature is the teacher and the scientists are the students.","lang":"eng"}],"type":"journal_article","oa_version":"Submitted Version","file":[{"creator":"dernst","content_type":"application/pdf","file_size":219837,"file_name":"2018_RS_IbsenJensen.pdf","access_level":"open_access","date_updated":"2020-07-14T12:45:22Z","date_created":"2019-02-12T07:54:37Z","checksum":"444e1a9d98eb0e780671be82b13025f3","file_id":"5955","relation":"main_file"}],"intvolume":" 15","status":"public","ddc":["000"],"title":"Language acquisition with communication between learners","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"198","has_accepted_license":"1","article_processing_charge":"No","day":"01","scopus_import":"1","date_published":"2018-03-01T00:00:00Z","article_type":"original","citation":{"chicago":"Ibsen-Jensen, Rasmus, Josef Tkadlec, Krishnendu Chatterjee, and Martin Nowak. “Language Acquisition with Communication between Learners.” Journal of the Royal Society Interface. The Royal Society, 2018. https://doi.org/10.1098/rsif.2018.0073.","short":"R. Ibsen-Jensen, J. Tkadlec, K. Chatterjee, M. Nowak, Journal of the Royal Society Interface 15 (2018).","mla":"Ibsen-Jensen, Rasmus, et al. “Language Acquisition with Communication between Learners.” Journal of the Royal Society Interface, vol. 15, no. 140, 20180073, The Royal Society, 2018, doi:10.1098/rsif.2018.0073.","ieee":"R. Ibsen-Jensen, J. Tkadlec, K. Chatterjee, and M. Nowak, “Language acquisition with communication between learners,” Journal of the Royal Society Interface, vol. 15, no. 140. The Royal Society, 2018.","apa":"Ibsen-Jensen, R., Tkadlec, J., Chatterjee, K., & Nowak, M. (2018). Language acquisition with communication between learners. Journal of the Royal Society Interface. The Royal Society. https://doi.org/10.1098/rsif.2018.0073","ista":"Ibsen-Jensen R, Tkadlec J, Chatterjee K, Nowak M. 2018. Language acquisition with communication between learners. Journal of the Royal Society Interface. 15(140), 20180073.","ama":"Ibsen-Jensen R, Tkadlec J, Chatterjee K, Nowak M. Language acquisition with communication between learners. Journal of the Royal Society Interface. 2018;15(140). doi:10.1098/rsif.2018.0073"},"publication":"Journal of the Royal Society Interface"},{"abstract":[{"lang":"eng","text":"The emergence of syntax during childhood is a remarkable example of how complex correlations unfold in nonlinear ways through development. In particular, rapid transitions seem to occur as children reach the age of two, which seems to separate a two-word, tree-like network of syntactic relations among words from the scale-free graphs associated with the adult, complex grammar. Here, we explore the evolution of syntax networks through language acquisition using the chromatic number, which captures the transition and provides a natural link to standard theories on syntactic structures. The data analysis is compared to a null model of network growth dynamics which is shown to display non-trivial and sensible differences. At a more general level, we observe that the chromatic classes define independent regions of the graph, and thus, can be interpreted as the footprints of incompatibility relations, somewhat as opposed to modularity considerations."}],"issue":"12","type":"journal_article","oa_version":"Published Version","file":[{"access_level":"open_access","file_name":"2018_RoyalSocOS_Corominas.pdf","content_type":"application/pdf","file_size":646732,"creator":"dernst","relation":"main_file","file_id":"5924","checksum":"9664d4417f6b792242e31eea77ce9501","date_updated":"2020-07-14T12:47:13Z","date_created":"2019-02-05T14:38:09Z"}],"ddc":["570"],"status":"public","title":"Chromatic transitions in the emergence of syntax networks","intvolume":" 5","_id":"5859","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"12","has_accepted_license":"1","article_processing_charge":"No","scopus_import":"1","date_published":"2018-12-12T00:00:00Z","article_type":"original","publication":"Royal Society Open Science","citation":{"short":"B. Corominas-Murtra, M.S. Fibla, S. Valverde, R. Solé, Royal Society Open Science 5 (2018).","mla":"Corominas-Murtra, Bernat, et al. “Chromatic Transitions in the Emergence of Syntax Networks.” Royal Society Open Science, vol. 5, no. 12, 181286, The Royal Society, 2018, doi:10.1098/rsos.181286.","chicago":"Corominas-Murtra, Bernat, Martí Sànchez Fibla, Sergi Valverde, and Ricard Solé. “Chromatic Transitions in the Emergence of Syntax Networks.” Royal Society Open Science. The Royal Society, 2018. https://doi.org/10.1098/rsos.181286.","ama":"Corominas-Murtra B, Fibla MS, Valverde S, Solé R. Chromatic transitions in the emergence of syntax networks. Royal Society Open Science. 2018;5(12). doi:10.1098/rsos.181286","ieee":"B. Corominas-Murtra, M. S. Fibla, S. Valverde, and R. Solé, “Chromatic transitions in the emergence of syntax networks,” Royal Society Open Science, vol. 5, no. 12. The Royal Society, 2018.","apa":"Corominas-Murtra, B., Fibla, M. S., Valverde, S., & Solé, R. (2018). Chromatic transitions in the emergence of syntax networks. Royal Society Open Science. The Royal Society. https://doi.org/10.1098/rsos.181286","ista":"Corominas-Murtra B, Fibla MS, Valverde S, Solé R. 2018. Chromatic transitions in the emergence of syntax networks. Royal Society Open Science. 5(12), 181286."},"file_date_updated":"2020-07-14T12:47:13Z","article_number":"181286","date_created":"2019-01-20T22:59:18Z","date_updated":"2023-10-18T06:41:12Z","volume":5,"author":[{"full_name":"Corominas-Murtra, Bernat","first_name":"Bernat","last_name":"Corominas-Murtra","id":"43BE2298-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-9806-5643"},{"last_name":"Fibla","first_name":"Martí Sànchez","full_name":"Fibla, Martí Sànchez"},{"full_name":"Valverde, Sergi","first_name":"Sergi","last_name":"Valverde"},{"last_name":"Solé","first_name":"Ricard","full_name":"Solé, Ricard"}],"publication_status":"published","publisher":"The Royal Society","department":[{"_id":"EdHa"}],"year":"2018","acknowledgement":"This work was supported by the James McDonnell Foundation (B.C-M., S.V. and R.S.)","pmid":1,"month":"12","publication_identifier":{"issn":["2054-5703"]},"language":[{"iso":"eng"}],"doi":"10.1098/rsos.181286","isi":1,"quality_controlled":"1","external_id":{"isi":["000456566500027"],"pmid":["30662738"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1},{"article_number":"1804.07752","type":"preprint","abstract":[{"lang":"eng","text":"We study the unique solution $m$ of the Dyson equation \\[ -m(z)^{-1} = z - a\r\n+ S[m(z)] \\] on a von Neumann algebra $\\mathcal{A}$ with the constraint\r\n$\\mathrm{Im}\\,m\\geq 0$. Here, $z$ lies in the complex upper half-plane, $a$ is\r\na self-adjoint element of $\\mathcal{A}$ and $S$ is a positivity-preserving\r\nlinear operator on $\\mathcal{A}$. We show that $m$ is the Stieltjes transform\r\nof a compactly supported $\\mathcal{A}$-valued measure on $\\mathbb{R}$. Under\r\nsuitable assumptions, we establish that this measure has a uniformly\r\n$1/3$-H\\\"{o}lder continuous density with respect to the Lebesgue measure, which\r\nis supported on finitely many intervals, called bands. In fact, the density is\r\nanalytic inside the bands with a square-root growth at the edges and internal\r\ncubic root cusps whenever the gap between two bands vanishes. The shape of\r\nthese singularities is universal and no other singularity may occur. We give a\r\nprecise asymptotic description of $m$ near the singular points. These\r\nasymptotics generalize the analysis at the regular edges given in the companion\r\npaper on the Tracy-Widom universality for the edge eigenvalue statistics for\r\ncorrelated random matrices [arXiv:1804.07744] and they play a key role in the\r\nproof of the Pearcey universality at the cusp for Wigner-type matrices\r\n[arXiv:1809.03971,arXiv:1811.04055]. We also extend the finite dimensional band\r\nmass formula from [arXiv:1804.07744] to the von Neumann algebra setting by\r\nshowing that the spectral mass of the bands is topologically rigid under\r\ndeformations and we conclude that these masses are quantized in some important\r\ncases."}],"_id":"6183","year":"2018","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"submitted","status":"public","title":"The Dyson equation with linear self-energy: Spectral bands, edges and cusps","department":[{"_id":"LaEr"}],"author":[{"full_name":"Alt, Johannes","id":"36D3D8B6-F248-11E8-B48F-1D18A9856A87","last_name":"Alt","first_name":"Johannes"},{"full_name":"Erdös, László","last_name":"Erdös","first_name":"László","orcid":"0000-0001-5366-9603","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87"},{"orcid":"0000-0002-4821-3297","id":"3020C786-F248-11E8-B48F-1D18A9856A87","last_name":"Krüger","first_name":"Torben H","full_name":"Krüger, Torben H"}],"related_material":{"record":[{"relation":"dissertation_contains","status":"public","id":"149"},{"id":"14694","relation":"later_version","status":"public"}]},"date_created":"2019-03-28T09:20:06Z","date_updated":"2023-12-18T10:46:08Z","oa_version":"Preprint","day":"20","month":"04","article_processing_charge":"No","publication":"arXiv","oa":1,"main_file_link":[{"url":"https://arxiv.org/abs/1804.07752","open_access":"1"}],"citation":{"ieee":"J. Alt, L. Erdös, and T. H. Krüger, “The Dyson equation with linear self-energy: Spectral bands, edges and cusps,” arXiv. .","apa":"Alt, J., Erdös, L., & Krüger, T. H. (n.d.). The Dyson equation with linear self-energy: Spectral bands, edges and cusps. arXiv.","ista":"Alt J, Erdös L, Krüger TH. The Dyson equation with linear self-energy: Spectral bands, edges and cusps. arXiv, 1804.07752.","ama":"Alt J, Erdös L, Krüger TH. The Dyson equation with linear self-energy: Spectral bands, edges and cusps. arXiv.","chicago":"Alt, Johannes, László Erdös, and Torben H Krüger. “The Dyson Equation with Linear Self-Energy: Spectral Bands, Edges and Cusps.” ArXiv, n.d.","short":"J. Alt, L. Erdös, T.H. Krüger, ArXiv (n.d.).","mla":"Alt, Johannes, et al. “The Dyson Equation with Linear Self-Energy: Spectral Bands, Edges and Cusps.” ArXiv, 1804.07752."},"external_id":{"arxiv":["1804.07752"]},"date_published":"2018-04-20T00:00:00Z","language":[{"iso":"eng"}]},{"article_number":"1804.03057","type":"preprint","abstract":[{"lang":"eng","text":"We prove that any convex body in the plane can be partitioned into m convex parts of equal areas and perimeters for any integer m≥2; this result was previously known for prime powers m=pk. We also give a higher-dimensional generalization."}],"ec_funded":1,"_id":"75","year":"2018","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","publication_status":"published","title":"Convex fair partitions into arbitrary number of pieces","department":[{"_id":"HeEd"},{"_id":"JaMa"}],"publisher":"arXiv","author":[{"first_name":"Arseniy","last_name":"Akopyan","id":"430D2C90-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2548-617X","full_name":"Akopyan, Arseniy"},{"id":"3827DAC8-F248-11E8-B48F-1D18A9856A87","first_name":"Sergey","last_name":"Avvakumov","full_name":"Avvakumov, Sergey"},{"last_name":"Karasev","first_name":"Roman","full_name":"Karasev, Roman"}],"related_material":{"record":[{"id":"8156","status":"public","relation":"dissertation_contains"}]},"date_created":"2018-12-11T11:44:30Z","date_updated":"2023-12-18T10:51:02Z","oa_version":"Preprint","day":"13","month":"09","article_processing_charge":"No","external_id":{"arxiv":["1804.03057"]},"oa":1,"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1804.03057"}],"citation":{"ama":"Akopyan A, Avvakumov S, Karasev R. Convex fair partitions into arbitrary number of pieces. 2018. doi:10.48550/arXiv.1804.03057","apa":"Akopyan, A., Avvakumov, S., & Karasev, R. (2018). Convex fair partitions into arbitrary number of pieces. arXiv. https://doi.org/10.48550/arXiv.1804.03057","ieee":"A. Akopyan, S. Avvakumov, and R. Karasev, “Convex fair partitions into arbitrary number of pieces.” arXiv, 2018.","ista":"Akopyan A, Avvakumov S, Karasev R. 2018. Convex fair partitions into arbitrary number of pieces. 1804.03057.","short":"A. Akopyan, S. Avvakumov, R. Karasev, (2018).","mla":"Akopyan, Arseniy, et al. Convex Fair Partitions into Arbitrary Number of Pieces. 1804.03057, arXiv, 2018, doi:10.48550/arXiv.1804.03057.","chicago":"Akopyan, Arseniy, Sergey Avvakumov, and Roman Karasev. “Convex Fair Partitions into Arbitrary Number of Pieces.” arXiv, 2018. https://doi.org/10.48550/arXiv.1804.03057."},"project":[{"grant_number":"716117","_id":"256E75B8-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"Optimal Transport and Stochastic Dynamics"}],"date_published":"2018-09-13T00:00:00Z","doi":"10.48550/arXiv.1804.03057","language":[{"iso":"eng"}]},{"type":"journal_article","abstract":[{"lang":"eng","text":"We investigate the free boundary Schur process, a variant of the Schur process introduced by Okounkov and Reshetikhin, where we allow the first and the last partitions to be arbitrary (instead of empty in the original setting). The pfaffian Schur process, previously studied by several authors, is recovered when just one of the boundary partitions is left free. We compute the correlation functions of the process in all generality via the free fermion formalism, which we extend with the thorough treatment of “free boundary states.” For the case of one free boundary, our approach yields a new proof that the process is pfaffian. For the case of two free boundaries, we find that the process is not pfaffian, but a closely related process is. We also study three different applications of the Schur process with one free boundary: fluctuations of symmetrized last passage percolation models, limit shapes and processes for symmetric plane partitions and for plane overpartitions."}],"issue":"12","_id":"556","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","title":"The free boundary Schur process and applications I","ddc":["500"],"intvolume":" 19","file":[{"checksum":"0c38abe73569b7166b7487ad5d23cc68","date_created":"2019-01-21T15:18:55Z","date_updated":"2020-07-14T12:47:03Z","relation":"main_file","file_id":"5866","content_type":"application/pdf","file_size":3084674,"creator":"dernst","access_level":"open_access","file_name":"2018_Annales_Betea.pdf"}],"oa_version":"Published Version","scopus_import":"1","day":"13","article_processing_charge":"Yes (via OA deal)","has_accepted_license":"1","publication":"Annales Henri Poincare","citation":{"ama":"Betea D, Bouttier J, Nejjar P, Vuletic M. The free boundary Schur process and applications I. Annales Henri Poincare. 2018;19(12):3663-3742. doi:10.1007/s00023-018-0723-1","ista":"Betea D, Bouttier J, Nejjar P, Vuletic M. 2018. The free boundary Schur process and applications I. Annales Henri Poincare. 19(12), 3663–3742.","ieee":"D. Betea, J. Bouttier, P. Nejjar, and M. Vuletic, “The free boundary Schur process and applications I,” Annales Henri Poincare, vol. 19, no. 12. Springer Nature, pp. 3663–3742, 2018.","apa":"Betea, D., Bouttier, J., Nejjar, P., & Vuletic, M. (2018). The free boundary Schur process and applications I. Annales Henri Poincare. Springer Nature. https://doi.org/10.1007/s00023-018-0723-1","mla":"Betea, Dan, et al. “The Free Boundary Schur Process and Applications I.” Annales Henri Poincare, vol. 19, no. 12, Springer Nature, 2018, pp. 3663–742, doi:10.1007/s00023-018-0723-1.","short":"D. Betea, J. Bouttier, P. Nejjar, M. Vuletic, Annales Henri Poincare 19 (2018) 3663–3742.","chicago":"Betea, Dan, Jeremie Bouttier, Peter Nejjar, and Mirjana Vuletic. “The Free Boundary Schur Process and Applications I.” Annales Henri Poincare. Springer Nature, 2018. https://doi.org/10.1007/s00023-018-0723-1."},"article_type":"original","page":"3663-3742","date_published":"2018-11-13T00:00:00Z","file_date_updated":"2020-07-14T12:47:03Z","publist_id":"7258","ec_funded":1,"year":"2018","publication_status":"published","publisher":"Springer Nature","department":[{"_id":"LaEr"},{"_id":"JaMa"}],"author":[{"full_name":"Betea, Dan","last_name":"Betea","first_name":"Dan"},{"full_name":"Bouttier, Jeremie","last_name":"Bouttier","first_name":"Jeremie"},{"full_name":"Nejjar, Peter","id":"4BF426E2-F248-11E8-B48F-1D18A9856A87","first_name":"Peter","last_name":"Nejjar"},{"first_name":"Mirjana","last_name":"Vuletic","full_name":"Vuletic, Mirjana"}],"date_created":"2018-12-11T11:47:09Z","date_updated":"2024-02-20T10:48:17Z","volume":19,"month":"11","publication_identifier":{"issn":["1424-0637"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"arxiv":["1704.05809"]},"oa":1,"quality_controlled":"1","project":[{"grant_number":"338804","_id":"258DCDE6-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","name":"Random matrices, universality and disordered quantum systems"},{"name":"Optimal Transport and Stochastic Dynamics","call_identifier":"H2020","_id":"256E75B8-B435-11E9-9278-68D0E5697425","grant_number":"716117"}],"doi":"10.1007/s00023-018-0723-1","language":[{"iso":"eng"}]},{"contributor":[{"first_name":"Paul","contributor_type":"researcher","last_name":"Swoboda","id":"446560C6-F248-11E8-B48F-1D18A9856A87"}],"related_material":{"link":[{"url":"https://doi.org/10.1007/978-3-319-24947-6_23","relation":"research_paper"}]},"author":[{"last_name":"Alhaija","first_name":"Hassan","full_name":"Alhaija, Hassan"},{"full_name":"Sellent, Anita","last_name":"Sellent","first_name":"Anita"},{"full_name":"Kondermann, Daniel","first_name":"Daniel","last_name":"Kondermann"},{"first_name":"Carsten","last_name":"Rother","full_name":"Rother, Carsten"}],"file":[{"relation":"main_file","file_id":"5600","date_created":"2018-12-12T13:02:34Z","date_updated":"2020-07-14T12:47:05Z","checksum":"53c17082848e12f3c2e1b4185b578208","file_name":"IST-2018-82-v1+1_GraphFlowMatchingProblems.zip","access_level":"open_access","file_size":1737958,"content_type":"application/zip","creator":"system"}],"oa_version":"Published Version","date_created":"2018-12-12T12:31:36Z","date_updated":"2024-02-21T13:41:17Z","_id":"5573","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2018","publisher":"Institute of Science and Technology Austria","department":[{"_id":"VlKo"}],"ddc":["001"],"status":"public","title":"Graph matching problems for GraphFlow – 6D Large Displacement Scene Flow","file_date_updated":"2020-07-14T12:47:05Z","abstract":[{"lang":"eng","text":"Graph matching problems for large displacement optical flow of RGB-D images."}],"license":"https://creativecommons.org/publicdomain/zero/1.0/","type":"research_data","datarep_id":"82","date_published":"2018-01-04T00:00:00Z","doi":"10.15479/AT:ISTA:82","tmp":{"short":"CC0 (1.0)","image":"/images/cc_0.png","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","name":"Creative Commons Public Domain Dedication (CC0 1.0)"},"citation":{"ama":"Alhaija H, Sellent A, Kondermann D, Rother C. Graph matching problems for GraphFlow – 6D Large Displacement Scene Flow. 2018. doi:10.15479/AT:ISTA:82","apa":"Alhaija, H., Sellent, A., Kondermann, D., & Rother, C. (2018). Graph matching problems for GraphFlow – 6D Large Displacement Scene Flow. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:82","ieee":"H. Alhaija, A. Sellent, D. Kondermann, and C. Rother, “Graph matching problems for GraphFlow – 6D Large Displacement Scene Flow.” Institute of Science and Technology Austria, 2018.","ista":"Alhaija H, Sellent A, Kondermann D, Rother C. 2018. Graph matching problems for GraphFlow – 6D Large Displacement Scene Flow, Institute of Science and Technology Austria, 10.15479/AT:ISTA:82.","short":"H. Alhaija, A. Sellent, D. Kondermann, C. Rother, (2018).","mla":"Alhaija, Hassan, et al. Graph Matching Problems for GraphFlow – 6D Large Displacement Scene Flow. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:82.","chicago":"Alhaija, Hassan, Anita Sellent, Daniel Kondermann, and Carsten Rother. “Graph Matching Problems for GraphFlow – 6D Large Displacement Scene Flow.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:82."},"oa":1,"article_processing_charge":"No","has_accepted_license":"1","month":"01","day":"04","keyword":["graph matching","quadratic assignment problem<"]},{"date_created":"2018-12-12T12:31:37Z","date_updated":"2024-02-21T13:41:32Z","oa_version":"Submitted Version","file":[{"date_created":"2018-12-12T13:02:39Z","date_updated":"2020-07-14T12:47:06Z","checksum":"786b599abfae6c355dee87835f414549","file_id":"5604","relation":"main_file","creator":"system","content_type":"application/zip","file_size":222011,"file_name":"IST-2018-89-v1+1_Emerald_Austrian_Publications_2013-2017.zip","access_level":"open_access"}],"author":[{"first_name":"Márton","last_name":"Villányi","id":"3FFCCD3A-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8126-0426","full_name":"Villányi, Márton"}],"related_material":{"record":[{"id":"278","relation":"part_of_dissertation","status":"public"}]},"status":"public","title":"Emerald Austrian Publications 2013-2017","ddc":["020"],"department":[{"_id":"E-Lib"}],"publisher":"Institute of Science and Technology Austria","_id":"5577","year":"2018","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file_date_updated":"2020-07-14T12:47:06Z","abstract":[{"lang":"ger","text":"Data on Austrian open access publication output at Emerald from 2013-2017 including data analysis."}],"datarep_id":"89","type":"research_data","doi":"10.15479/AT:ISTA:89","date_published":"2018-01-16T00:00:00Z","oa":1,"tmp":{"short":"CC0 (1.0)","image":"/images/cc_0.png","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","name":"Creative Commons Public Domain Dedication (CC0 1.0)"},"citation":{"ieee":"M. Villányi, “Emerald Austrian Publications 2013-2017.” Institute of Science and Technology Austria, 2018.","apa":"Villányi, M. (2018). Emerald Austrian Publications 2013-2017. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:89","ista":"Villányi M. 2018. Emerald Austrian Publications 2013-2017, Institute of Science and Technology Austria, 10.15479/AT:ISTA:89.","ama":"Villányi M. Emerald Austrian Publications 2013-2017. 2018. doi:10.15479/AT:ISTA:89","chicago":"Villányi, Márton. “Emerald Austrian Publications 2013-2017.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:89.","short":"M. Villányi, (2018).","mla":"Villányi, Márton. Emerald Austrian Publications 2013-2017. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:89."},"month":"01","day":"16","article_processing_charge":"No","has_accepted_license":"1","keyword":["Publication analysis","Bibliography","Open Access"]},{"keyword":["Publication analysis","Bibliography","Open Access"],"has_accepted_license":"1","article_processing_charge":"No","day":"16","month":"01","citation":{"ista":"Villányi M. 2018. IOP Austrian Publications 2012-2015, Institute of Science and Technology Austria, 10.15479/AT:ISTA:90.","apa":"Villányi, M. (2018). IOP Austrian Publications 2012-2015. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:90","ieee":"M. Villányi, “IOP Austrian Publications 2012-2015.” Institute of Science and Technology Austria, 2018.","ama":"Villányi M. 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Data Check IOP Scopus vs. Publisher, Institute of Science and Technology Austria, 10.15479/AT:ISTA:86.","ieee":"M. Villányi, “Data Check IOP Scopus vs. Publisher.” Institute of Science and Technology Austria, 2018.","apa":"Villányi, M. (2018). Data Check IOP Scopus vs. Publisher. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:86","ama":"Villányi M. Data Check IOP Scopus vs. Publisher. 2018. doi:10.15479/AT:ISTA:86","chicago":"Villányi, Márton. “Data Check IOP Scopus vs. Publisher.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:86.","mla":"Villányi, Márton. Data Check IOP Scopus vs. Publisher. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:86.","short":"M. Villányi, (2018)."},"oa":1,"doi":"10.15479/AT:ISTA:86","date_published":"2018-01-16T00:00:00Z"},{"date_published":"2018-04-06T00:00:00Z","supervisor":[{"first_name":"Brigitte","last_name":"Kromp","full_name":"Kromp, Brigitte"}],"language":[{"iso":"ger"}],"citation":{"chicago":"Villányi, Márton. “Lizenzverträge mit Open-Access-Komponenten an österreichischen Bibliotheken.” Universität Wien, 2018.","mla":"Villányi, Márton. Lizenzverträge mit Open-Access-Komponenten an österreichischen Bibliotheken. Universität Wien, 2018.","short":"M. Villányi, Lizenzverträge mit Open-Access-Komponenten an österreichischen Bibliotheken, Universität Wien, 2018.","ista":"Villányi M. 2018. Lizenzverträge mit Open-Access-Komponenten an österreichischen Bibliotheken. Universität Wien.","apa":"Villányi, M. (2018). Lizenzverträge mit Open-Access-Komponenten an österreichischen Bibliotheken. Universität Wien.","ieee":"M. Villányi, “Lizenzverträge mit Open-Access-Komponenten an österreichischen Bibliotheken,” Universität Wien, 2018.","ama":"Villányi M. Lizenzverträge mit Open-Access-Komponenten an österreichischen Bibliotheken. 2018."},"oa":1,"main_file_link":[{"open_access":"1","url":"http://othes.univie.ac.at/51113/"}],"page":"94","month":"04","day":"06","author":[{"orcid":"0000-0001-8126-0426","id":"3FFCCD3A-F248-11E8-B48F-1D18A9856A87","last_name":"Villányi","first_name":"Márton","full_name":"Villányi, Márton"}],"related_material":{"record":[{"id":"5577","status":"public","relation":"dissertation_contains"},{"id":"5574","status":"public","relation":"dissertation_contains"},{"status":"public","relation":"dissertation_contains","id":"5578"},{"status":"public","relation":"dissertation_contains","id":"5579"},{"id":"5576","relation":"dissertation_contains","status":"public"},{"id":"5575","status":"public","relation":"dissertation_contains"},{"id":"5582","relation":"dissertation_contains","status":"public"},{"id":"5581","relation":"dissertation_contains","status":"public"},{"relation":"dissertation_contains","status":"public","id":"5580"}]},"date_updated":"2024-02-21T13:44:07Z","date_created":"2018-12-11T11:45:34Z","oa_version":"Published Version","_id":"278","year":"2018","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Lizenzverträge mit Open-Access-Komponenten an österreichischen Bibliotheken","status":"public","publication_status":"published","department":[{"_id":"E-Lib"}],"publisher":"Universität Wien","abstract":[{"lang":"eng","text":"Consortial subscription contracts regulate the digital access to publications between publishers and scientific libraries. However, since a couple of years the tendency towards a freely accessible publishing (Open Access) intensifies. As a consequence of this trend the contractual relationship between licensor and licensee is gradually changing as well: More and more contracts exercise influence on open access publishing. The present study attempts to compare Austrian examples of consortial licence contracts, which include components of open access. It describes the difference between pure subscription contracts and differing innovative deals including open access components. Thereby it becomes obvious that for the evaluation of this licence contracts new methods are needed. An essential new element of such analyses is the evaluation of the open access publication numbers. So this study tries to carry out such publication analyses for Austrian open access deals focusing on quantitative questions: How does the number of publications evolve? How does the open access share change? Publications reports of the publishers and database queries from Scopus form the data basis. The analysis of the data points out that differing approaches of contracts result in highly divergent results: Particular deals can prioritize a saving in costs or else the increase of the open access rate. It is to be assumed that within the following years further numerous open access deals will be negotiated. The finding of this study shall provide guidance."}],"publist_id":"7624","type":"dissertation"},{"date_updated":"2024-02-21T13:44:21Z","date_created":"2018-12-12T12:31:41Z","oa_version":"Published Version","file":[{"relation":"main_file","file_id":"6296","date_updated":"2020-07-14T12:47:08Z","date_created":"2019-04-11T18:15:01Z","checksum":"a4e160054c9114600624cf89a925fd7d","file_name":"IST-2018-113-v1+1_FLIMX16TCSPCLifeTimeFit.zip","access_level":"open_access","content_type":"application/x-zip-compressed","file_size":47866557,"creator":"rhauschild"}],"author":[{"full_name":"Hauschild, Robert","orcid":"0000-0001-9843-3522","id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87","last_name":"Hauschild","first_name":"Robert"}],"title":"Fluorescence lifetime analysis of FLIM X16 TCSPC data","status":"public","ddc":["570"],"department":[{"_id":"Bio"}],"publisher":"Institute of Science and Technology Austria","_id":"5588","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2018","file_date_updated":"2020-07-14T12:47:08Z","abstract":[{"text":"Script to perform a simple exponential lifetime fit of a ROI on time stacks acquired with a FLIM X16 TCSPC detector (+example data)","lang":"eng"}],"datarep_id":"113","type":"research_data","date_published":"2018-11-07T00:00:00Z","doi":"10.15479/AT:ISTA:0113","tmp":{"short":"CC0 (1.0)","image":"/images/cc_0.png","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","name":"Creative Commons Public Domain Dedication (CC0 1.0)"},"citation":{"short":"R. Hauschild, (2018).","mla":"Hauschild, Robert. Fluorescence Lifetime Analysis of FLIM X16 TCSPC Data. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:0113.","chicago":"Hauschild, Robert. “Fluorescence Lifetime Analysis of FLIM X16 TCSPC Data.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:0113.","ama":"Hauschild R. Fluorescence lifetime analysis of FLIM X16 TCSPC data. 2018. doi:10.15479/AT:ISTA:0113","apa":"Hauschild, R. (2018). Fluorescence lifetime analysis of FLIM X16 TCSPC data. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:0113","ieee":"R. Hauschild, “Fluorescence lifetime analysis of FLIM X16 TCSPC data.” Institute of Science and Technology Austria, 2018.","ista":"Hauschild R. 2018. Fluorescence lifetime analysis of FLIM X16 TCSPC data, Institute of Science and Technology Austria, 10.15479/AT:ISTA:0113."},"oa":1,"day":"07","month":"11","article_processing_charge":"No","has_accepted_license":"1","keyword":["FLIM","FRET","fluorescence lifetime imaging"]}]