@article{3254,
abstract = {The theory of graph games with ω-regular winning conditions is the foundation for modeling and synthesizing reactive processes. In the case of stochastic reactive processes, the corresponding stochastic graph games have three players, two of them (System and Environment) behaving adversarially, and the third (Uncertainty) behaving probabilistically. We consider two problems for stochastic graph games: the qualitative problem asks for the set of states from which a player can win with probability 1 (almost-sure winning); and the quantitative problem asks for the maximal probability of winning (optimal winning) from each state. We consider ω-regular winning conditions formalized as Müller winning conditions. We present optimal memory bounds for pure (deterministic) almost-sure winning and optimal winning strategies in stochastic graph games with Müller winning conditions. We also study the complexity of stochastic Müller games and show that both the qualitative and quantitative analysis problems are PSPACE-complete. Our results are relevant in synthesis of stochastic reactive processes.},
author = {Chatterjee, Krishnendu},
journal = {Information and Computation},
pages = {29 -- 48},
publisher = {Elsevier},
title = {{The complexity of stochastic Müller games}},
doi = {10.1016/j.ic.2011.11.004},
volume = {211},
year = {2012},
}
@inproceedings{3255,
abstract = {In this paper we survey results of two-player games on graphs and Markov decision processes with parity, mean-payoff and energy objectives, and the combination of mean-payoff and energy objectives with parity objectives. These problems have applications in verification and synthesis of reactive systems in resource-constrained environments.},
author = {Chatterjee, Krishnendu and Doyen, Laurent},
location = {Lednice, Czech Republic},
pages = {37 -- 46},
publisher = {Springer},
title = {{Games and Markov decision processes with mean payoff parity and energy parity objectives}},
doi = {10.1007/978-3-642-25929-6_3},
volume = {7119},
year = {2012},
}
@article{3256,
abstract = {We use a distortion to define the dual complex of a cubical subdivision of ℝ n as an n-dimensional subcomplex of the nerve of the set of n-cubes. Motivated by the topological analysis of high-dimensional digital image data, we consider such subdivisions defined by generalizations of quad- and oct-trees to n dimensions. Assuming the subdivision is balanced, we show that mapping each vertex to the center of the corresponding n-cube gives a geometric realization of the dual complex in ℝ n.},
author = {Edelsbrunner, Herbert and Kerber, Michael},
journal = {Discrete & Computational Geometry},
number = {2},
pages = {393 -- 414},
publisher = {Springer},
title = {{Dual complexes of cubical subdivisions of ℝn}},
doi = {10.1007/s00454-011-9382-4},
volume = {47},
year = {2012},
}
@article{3257,
abstract = {Consider a convex relaxation f̂ of a pseudo-Boolean function f. We say that the relaxation is totally half-integral if f̂(x) is a polyhedral function with half-integral extreme points x, and this property is preserved after adding an arbitrary combination of constraints of the form x i=x j, x i=1-x j, and x i=γ where γ∈{0,1,1/2} is a constant. A well-known example is the roof duality relaxation for quadratic pseudo-Boolean functions f. We argue that total half-integrality is a natural requirement for generalizations of roof duality to arbitrary pseudo-Boolean functions. Our contributions are as follows. First, we provide a complete characterization of totally half-integral relaxations f̂ by establishing a one-to-one correspondence with bisubmodular functions. Second, we give a new characterization of bisubmodular functions. Finally, we show some relationships between general totally half-integral relaxations and relaxations based on the roof duality. On the conceptual level, our results show that bisubmodular functions provide a natural generalization of the roof duality approach to higher-order terms. This can be viewed as a non-submodular analogue of the fact that submodular functions generalize the s-t minimum cut problem with non-negative weights to higher-order terms.},
author = {Kolmogorov, Vladimir},
journal = {Discrete Applied Mathematics},
number = {4-5},
pages = {416 -- 426},
publisher = {Elsevier},
title = {{Generalized roof duality and bisubmodular functions}},
doi = {10.1016/j.dam.2011.10.026},
volume = {160},
year = {2012},
}
@article{3258,
abstract = {CA3 pyramidal neurons are important for memory formation and pattern completion in the hippocampal network. It is generally thought that proximal synapses from the mossy fibers activate these neurons most efficiently, whereas distal inputs from the perforant path have a weaker modulatory influence. We used confocally targeted patch-clamp recording from dendrites and axons to map the activation of rat CA3 pyramidal neurons at the subcellular level. Our results reveal two distinct dendritic domains. In the proximal domain, action potentials initiated in the axon backpropagate actively with large amplitude and fast time course. In the distal domain, Na+ channel–mediated dendritic spikes are efficiently initiated by waveforms mimicking synaptic events. CA3 pyramidal neuron dendrites showed a high Na+-to-K+ conductance density ratio, providing ideal conditions for active backpropagation and dendritic spike initiation. Dendritic spikes may enhance the computational power of CA3 pyramidal neurons in the hippocampal network.},
author = {Kim, Sooyun and Guzmán, José and Hu, Hua and Jonas, Peter M},
journal = {Nature Neuroscience},
number = {4},
pages = {600 -- 606},
publisher = {Nature Publishing Group},
title = {{Active dendrites support efficient initiation of dendritic spikes in hippocampal CA3 pyramidal neurons}},
doi = {10.1038/nn.3060},
volume = {15},
year = {2012},
}
@article{3260,
abstract = {Many scenarios in the living world, where individual organisms compete for winning positions (or resources), have properties of auctions. Here we study the evolution of bids in biological auctions. For each auction, n individuals are drawn at random from a population of size N. Each individual makes a bid which entails a cost. The winner obtains a benefit of a certain value. Costs and benefits are translated into reproductive success (fitness). Therefore, successful bidding strategies spread in the population. We compare two types of auctions. In “biological all-pay auctions”, the costs are the bid for every participating individual. In “biological second price all-pay auctions”, the cost for everyone other than the winner is the bid, but the cost for the winner is the second highest bid. Second price all-pay auctions are generalizations of the “war of attrition” introduced by Maynard Smith. We study evolutionary dynamics in both types of auctions. We calculate pairwise invasion plots and evolutionarily stable distributions over the continuous strategy space. We find that the average bid in second price all-pay auctions is higher than in all-pay auctions, but the average cost for the winner is similar in both auctions. In both cases, the average bid is a declining function of the number of participants, n. The more individuals participate in an auction the smaller is the chance of winning, and thus expensive bids must be avoided.
},
author = {Chatterjee, Krishnendu and Reiter, Johannes and Nowak, Martin},
journal = {Theoretical Population Biology},
number = {1},
pages = {69 -- 80},
publisher = {Academic Press},
title = {{Evolutionary dynamics of biological auctions}},
doi = {10.1016/j.tpb.2011.11.003},
volume = {81},
year = {2012},
}
@article{3262,
abstract = {Living cells must control the reading out or "expression" of information encoded in their genomes, and this regulation often is mediated by transcription factors--proteins that bind to DNA and either enhance or repress the expression of nearby genes. But the expression of transcription factor proteins is itself regulated, and many transcription factors regulate their own expression in addition to responding to other input signals. Here we analyze the simplest of such self-regulatory circuits, asking how parameters can be chosen to optimize information transmission from inputs to outputs in the steady state. Some nonzero level of self-regulation is almost always optimal, with self-activation dominant when transcription factor concentrations are low and self-repression dominant when concentrations are high. In steady state the optimal self-activation is never strong enough to induce bistability, although there is a limit in which the optimal parameters are very close to the critical point.},
author = {Tkacik, Gasper and Walczak, Aleksandra and Bialek, William},
journal = { Physical Review E statistical nonlinear and soft matter physics },
number = {4},
publisher = {American Institute of Physics},
title = {{Optimizing information flow in small genetic networks. III. A self-interacting gene}},
doi = {10.1103/PhysRevE.85.041903},
volume = {85},
year = {2012},
}
@inproceedings{3265,
abstract = {We propose a mid-level statistical model for image segmentation that composes multiple figure-ground hypotheses (FG) obtained by applying constraints at different locations and scales, into larger interpretations (tilings) of the entire image. Inference is cast as optimization over sets of maximal cliques sampled from a graph connecting all non-overlapping figure-ground segment hypotheses. Potential functions over cliques combine unary, Gestalt-based figure qualities, and pairwise compatibilities among spatially neighboring segments, constrained by T-junctions and the boundary interface statistics of real scenes. Learning the model parameters is based on maximum likelihood, alternating between sampling image tilings and optimizing their potential function parameters. State of the art results are reported on the Berkeley and Stanford segmentation datasets, as well as VOC2009, where a 28% improvement was achieved.},
author = {Ion, Adrian and Carreira, Joao and Sminchisescu, Cristian},
location = {Barcelona, Spain},
publisher = {IEEE},
title = {{Image segmentation by figure-ground composition into maximal cliques}},
doi = {10.1109/ICCV.2011.6126486},
year = {2012},
}
@article{3274,
abstract = {A boundary element model of a tunnel running through horizontally layered soil with anisotropic material properties is presented. Since there is no analytical fundamental solution for wave propagation inside a layered orthotropic medium in 3D, the fundamental displacements and stresses have to be calculated numerically. In our model this is done in the Fourier domain with respect to space and time. The assumption of a straight tunnel with infinite extension in the x direction makes it possible to decouple the system for every wave number kx, leading to a 2.5D-problem, which is suited for parallel computation. The special form of the fundamental solution, resulting from our Fourier ansatz, and the fact, that the calculation of the boundary integral equation is performed in the Fourier domain, enhances the stability and efficiency of the numerical calculations.},
author = {Rieckh, Georg and Kreuzer, Wolfgang and Waubke, Holger and Balazs, Peter},
journal = { Engineering Analysis with Boundary Elements},
number = {6},
pages = {960 -- 967},
publisher = {Elsevier},
title = {{A 2.5D-Fourier-BEM model for vibrations in a tunnel running through layered anisotropic soil}},
doi = {10.1016/j.enganabound.2011.12.014},
volume = {36},
year = {2012},
}
@inbook{3277,
abstract = {The problem of the origin of metazoa is becoming more urgent in the context of astrobiology. By now it is clear that clues to the understanding of this crucial transition in the evolution of life can arise in a fourth pathway besides the three possibilities in the quest for simplicity outlined by Bonner in his classical book. In other words, solar system exploration seems to be one way in the long-term to elucidate the simplicity of evolutionary development. We place these ideas in the context of different inheritance systems, namely the genotypic and phenotypic replicators with limited or unlimited heredity, and ask which of these can support multicellular development, and to which degree of complexity. However, the quest for evidence on the evolution of biotas from planets around other stars does not seem to be feasible with present technology with direct visualization of living organisms on exoplanets. But this may be attempted on the Galilean moons of Jupiter where there is a possibility of detecting reliable biomarkers in the next decade with the Europa Jupiter System Mission, in view of recent progress by landing micropenetrators on planetary, or satellite surfaces. Mars is a second possibility in the inner Solar System, in spite of the multiple difficulties faced by the fleet of past, present and future missions. We discuss a series of preliminary ideas for elucidating the origin of metazoan analogues with available instrumentation in potential payloads of feasible space missions to the Galilean moons.},
author = {de Vladar, Harold and Chela Flores, Julian},
booktitle = {Life on Earth and other planetary bodies},
pages = {387 -- 405},
publisher = {Springer},
title = {{Can the evolution of multicellularity be anticipated in the exploration of the solar system?}},
doi = {10.1007/978-94-007-4966-5_22},
volume = {24},
year = {2012},
}