---
_id: '2155'
abstract:
- lang: eng
text: Given a finite set of points in Rn and a positive radius, we study the Čech,
Delaunay-Čech, alpha, and wrap complexes as instances of a generalized discrete
Morse theory. We prove that the latter three complexes are simple-homotopy equivalent.
Our results have applications in topological data analysis and in the reconstruction
of shapes from sampled data. Copyright is held by the owner/author(s).
acknowledgement: This research is partially supported by ESF under the ACAT Research
Network Programme, and by the Russian Government under mega project 11.G34.31.0053
author:
- first_name: Ulrich
full_name: Bauer, Ulrich
id: 2ADD483A-F248-11E8-B48F-1D18A9856A87
last_name: Bauer
orcid: 0000-0002-9683-0724
- first_name: Herbert
full_name: Edelsbrunner, Herbert
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
citation:
ama: 'Bauer U, Edelsbrunner H. The morse theory of Čech and Delaunay filtrations.
In: Proceedings of the Annual Symposium on Computational Geometry. ACM;
2014:484-490. doi:10.1145/2582112.2582167'
apa: 'Bauer, U., & Edelsbrunner, H. (2014). The morse theory of Čech and Delaunay
filtrations. In Proceedings of the Annual Symposium on Computational Geometry
(pp. 484–490). Kyoto, Japan: ACM. https://doi.org/10.1145/2582112.2582167'
chicago: Bauer, Ulrich, and Herbert Edelsbrunner. “The Morse Theory of Čech and
Delaunay Filtrations.” In Proceedings of the Annual Symposium on Computational
Geometry, 484–90. ACM, 2014. https://doi.org/10.1145/2582112.2582167.
ieee: U. Bauer and H. Edelsbrunner, “The morse theory of Čech and Delaunay filtrations,”
in Proceedings of the Annual Symposium on Computational Geometry, Kyoto,
Japan, 2014, pp. 484–490.
ista: 'Bauer U, Edelsbrunner H. 2014. The morse theory of Čech and Delaunay filtrations.
Proceedings of the Annual Symposium on Computational Geometry. SoCG: Symposium
on Computational Geometry, 484–490.'
mla: Bauer, Ulrich, and Herbert Edelsbrunner. “The Morse Theory of Čech and Delaunay
Filtrations.” Proceedings of the Annual Symposium on Computational Geometry,
ACM, 2014, pp. 484–90, doi:10.1145/2582112.2582167.
short: U. Bauer, H. Edelsbrunner, in:, Proceedings of the Annual Symposium on Computational
Geometry, ACM, 2014, pp. 484–490.
conference:
end_date: 2014-06-11
location: Kyoto, Japan
name: 'SoCG: Symposium on Computational Geometry'
start_date: 2014-06-08
date_created: 2018-12-11T11:56:01Z
date_published: 2014-06-01T00:00:00Z
date_updated: 2021-01-12T06:55:38Z
day: '01'
department:
- _id: HeEd
doi: 10.1145/2582112.2582167
ec_funded: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1312.1231
month: '06'
oa: 1
oa_version: Submitted Version
page: 484 - 490
project:
- _id: 255D761E-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '318493'
name: Topological Complex Systems
publication: Proceedings of the Annual Symposium on Computational Geometry
publication_status: published
publisher: ACM
publist_id: '4851'
quality_controlled: '1'
scopus_import: 1
status: public
title: The morse theory of Čech and Delaunay filtrations
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
year: '2014'
...
---
_id: '2177'
abstract:
- lang: eng
text: We give evidence for the difficulty of computing Betti numbers of simplicial
complexes over a finite field. We do this by reducing the rank computation for
sparse matrices with to non-zero entries to computing Betti numbers of simplicial
complexes consisting of at most a constant times to simplices. Together with the
known reduction in the other direction, this implies that the two problems have
the same computational complexity.
author:
- first_name: Herbert
full_name: Edelsbrunner, Herbert
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
- first_name: Salman
full_name: Parsa, Salman
id: 4BDBD4F2-F248-11E8-B48F-1D18A9856A87
last_name: Parsa
citation:
ama: 'Edelsbrunner H, Parsa S. On the computational complexity of betti numbers
reductions from matrix rank. In: Proceedings of the Annual ACM-SIAM Symposium
on Discrete Algorithms. SIAM; 2014:152-160. doi:10.1137/1.9781611973402.11'
apa: 'Edelsbrunner, H., & Parsa, S. (2014). On the computational complexity
of betti numbers reductions from matrix rank. In Proceedings of the Annual
ACM-SIAM Symposium on Discrete Algorithms (pp. 152–160). Portland, USA: SIAM.
https://doi.org/10.1137/1.9781611973402.11'
chicago: Edelsbrunner, Herbert, and Salman Parsa. “On the Computational Complexity
of Betti Numbers Reductions from Matrix Rank.” In Proceedings of the Annual
ACM-SIAM Symposium on Discrete Algorithms, 152–60. SIAM, 2014. https://doi.org/10.1137/1.9781611973402.11.
ieee: H. Edelsbrunner and S. Parsa, “On the computational complexity of betti numbers
reductions from matrix rank,” in Proceedings of the Annual ACM-SIAM Symposium
on Discrete Algorithms, Portland, USA, 2014, pp. 152–160.
ista: 'Edelsbrunner H, Parsa S. 2014. On the computational complexity of betti numbers
reductions from matrix rank. Proceedings of the Annual ACM-SIAM Symposium on Discrete
Algorithms. SODA: Symposium on Discrete Algorithms, 152–160.'
mla: Edelsbrunner, Herbert, and Salman Parsa. “On the Computational Complexity of
Betti Numbers Reductions from Matrix Rank.” Proceedings of the Annual ACM-SIAM
Symposium on Discrete Algorithms, SIAM, 2014, pp. 152–60, doi:10.1137/1.9781611973402.11.
short: H. Edelsbrunner, S. Parsa, in:, Proceedings of the Annual ACM-SIAM Symposium
on Discrete Algorithms, SIAM, 2014, pp. 152–160.
conference:
end_date: 2014-01-07
location: Portland, USA
name: 'SODA: Symposium on Discrete Algorithms'
start_date: 2014-01-05
date_created: 2018-12-11T11:56:09Z
date_published: 2014-01-01T00:00:00Z
date_updated: 2021-01-12T06:55:48Z
day: '01'
department:
- _id: HeEd
doi: 10.1137/1.9781611973402.11
language:
- iso: eng
month: '01'
oa_version: None
page: 152 - 160
publication: Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms
publication_status: published
publisher: SIAM
publist_id: '4805'
quality_controlled: '1'
scopus_import: 1
status: public
title: On the computational complexity of betti numbers reductions from matrix rank
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
year: '2014'
...
---
_id: '2184'
abstract:
- lang: eng
text: 'Given topological spaces X,Y, a fundamental problem of algebraic topology
is understanding the structure of all continuous maps X→ Y. We consider a computational
version, where X,Y are given as finite simplicial complexes, and the goal is to
compute [X,Y], that is, all homotopy classes of suchmaps.We solve this problem
in the stable range, where for some d ≥ 2, we have dim X ≤ 2d-2 and Y is (d-1)-connected;
in particular, Y can be the d-dimensional sphere Sd. The algorithm combines classical
tools and ideas from homotopy theory (obstruction theory, Postnikov systems, and
simplicial sets) with algorithmic tools from effective algebraic topology (locally
effective simplicial sets and objects with effective homology). In contrast, [X,Y]
is known to be uncomputable for general X,Y, since for X = S1 it includes a well
known undecidable problem: testing triviality of the fundamental group of Y. In
follow-up papers, the algorithm is shown to run in polynomial time for d fixed,
and extended to other problems, such as the extension problem, where we are given
a subspace A ⊂ X and a map A→ Y and ask whether it extends to a map X → Y, or
computing the Z2-index-everything in the stable range. Outside the stable range,
the extension problem is undecidable.'
acknowledgement: The research by M. K. was supported by project GAUK 49209. The research
by M. K. was also supported by project 1M0545 by the Ministry of Education of the
Czech Republic and by Center of Excellence { Inst. for Theor. Comput. Sci., Prague
(project P202/12/G061 of GACR). The research by U. W. was supported by the Swiss
National Science Foundation (SNF Projects 200021-125309, 200020-138230, and PP00P2-138948).
article_number: '17 '
author:
- first_name: Martin
full_name: Čadek, Martin
last_name: Čadek
- first_name: Marek
full_name: Krcál, Marek
id: 33E21118-F248-11E8-B48F-1D18A9856A87
last_name: Krcál
- first_name: Jiří
full_name: Matoušek, Jiří
last_name: Matoušek
- first_name: Francis
full_name: Sergeraert, Francis
last_name: Sergeraert
- first_name: Lukáš
full_name: Vokřínek, Lukáš
last_name: Vokřínek
- first_name: Uli
full_name: Wagner, Uli
id: 36690CA2-F248-11E8-B48F-1D18A9856A87
last_name: Wagner
orcid: 0000-0002-1494-0568
citation:
ama: Čadek M, Krcál M, Matoušek J, Sergeraert F, Vokřínek L, Wagner U. Computing
all maps into a sphere. Journal of the ACM. 2014;61(3). doi:10.1145/2597629
apa: Čadek, M., Krcál, M., Matoušek, J., Sergeraert, F., Vokřínek, L., & Wagner,
U. (2014). Computing all maps into a sphere. Journal of the ACM. ACM. https://doi.org/10.1145/2597629
chicago: Čadek, Martin, Marek Krcál, Jiří Matoušek, Francis Sergeraert, Lukáš Vokřínek,
and Uli Wagner. “Computing All Maps into a Sphere.” Journal of the ACM.
ACM, 2014. https://doi.org/10.1145/2597629.
ieee: M. Čadek, M. Krcál, J. Matoušek, F. Sergeraert, L. Vokřínek, and U. Wagner,
“Computing all maps into a sphere,” Journal of the ACM, vol. 61, no. 3.
ACM, 2014.
ista: Čadek M, Krcál M, Matoušek J, Sergeraert F, Vokřínek L, Wagner U. 2014. Computing
all maps into a sphere. Journal of the ACM. 61(3), 17.
mla: Čadek, Martin, et al. “Computing All Maps into a Sphere.” Journal of the
ACM, vol. 61, no. 3, 17, ACM, 2014, doi:10.1145/2597629.
short: M. Čadek, M. Krcál, J. Matoušek, F. Sergeraert, L. Vokřínek, U. Wagner, Journal
of the ACM 61 (2014).
date_created: 2018-12-11T11:56:12Z
date_published: 2014-05-01T00:00:00Z
date_updated: 2021-01-12T06:55:50Z
day: '01'
department:
- _id: UlWa
- _id: HeEd
doi: 10.1145/2597629
intvolume: ' 61'
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1105.6257
month: '05'
oa: 1
oa_version: Preprint
publication: Journal of the ACM
publication_status: published
publisher: ACM
publist_id: '4797'
quality_controlled: '1'
scopus_import: 1
status: public
title: Computing all maps into a sphere
type: journal_article
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 61
year: '2014'
...
---
_id: '2905'
abstract:
- lang: eng
text: "Persistent homology is a recent grandchild of homology that has found use
in\r\nscience and engineering as well as in mathematics. This paper surveys the
method as well\r\nas the applications, neglecting completeness in favor of highlighting
ideas and directions."
acknowledgement: This research is partially supported by NSF under grant DBI-0820624,
by ESF under the Research Networking Programme, and by the Russian Government Project
11.G34.31.0053.
article_processing_charge: No
author:
- first_name: Herbert
full_name: Edelsbrunner, Herbert
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
- first_name: Dmitriy
full_name: Morozovy, Dmitriy
last_name: Morozovy
citation:
ama: 'Edelsbrunner H, Morozovy D. Persistent homology: Theory and practice. In:
European Mathematical Society Publishing House; 2014:31-50. doi:10.4171/120-1/3'
apa: 'Edelsbrunner, H., & Morozovy, D. (2014). Persistent homology: Theory and
practice (pp. 31–50). Presented at the ECM: European Congress of Mathematics,
Kraków, Poland: European Mathematical Society Publishing House. https://doi.org/10.4171/120-1/3'
chicago: 'Edelsbrunner, Herbert, and Dmitriy Morozovy. “Persistent Homology: Theory
and Practice,” 31–50. European Mathematical Society Publishing House, 2014. https://doi.org/10.4171/120-1/3.'
ieee: 'H. Edelsbrunner and D. Morozovy, “Persistent homology: Theory and practice,”
presented at the ECM: European Congress of Mathematics, Kraków, Poland, 2014,
pp. 31–50.'
ista: 'Edelsbrunner H, Morozovy D. 2014. Persistent homology: Theory and practice.
ECM: European Congress of Mathematics, 31–50.'
mla: 'Edelsbrunner, Herbert, and Dmitriy Morozovy. Persistent Homology: Theory
and Practice. European Mathematical Society Publishing House, 2014, pp. 31–50,
doi:10.4171/120-1/3.'
short: H. Edelsbrunner, D. Morozovy, in:, European Mathematical Society Publishing
House, 2014, pp. 31–50.
conference:
end_date: 2012-07-07
location: Kraków, Poland
name: 'ECM: European Congress of Mathematics'
start_date: 2012-07-02
date_created: 2018-12-11T12:00:16Z
date_published: 2014-01-01T00:00:00Z
date_updated: 2021-01-12T07:00:36Z
day: '01'
ddc:
- '000'
department:
- _id: HeEd
doi: 10.4171/120-1/3
file:
- access_level: open_access
checksum: 1d4a046f1af945c407c5c4d411d4c5e4
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:16:43Z
date_updated: 2020-07-14T12:45:52Z
file_id: '5232'
file_name: IST-2016-544-v1+1_2012-P-11-PHTheoryPractice.pdf
file_size: 435320
relation: main_file
file_date_updated: 2020-07-14T12:45:52Z
has_accepted_license: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Submitted Version
page: 31 - 50
publication_status: published
publisher: European Mathematical Society Publishing House
publist_id: '3842'
pubrep_id: '544'
quality_controlled: '1'
status: public
title: 'Persistent homology: Theory and practice'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2014'
...
---
_id: '10892'
abstract:
- lang: eng
text: "In this paper, we introduce planar matchings on directed pseudo-line arrangements,
which yield a planar set of pseudo-line segments such that only matching-partners
are adjacent. By translating the planar matching problem into a corresponding
stable roommates problem we show that such matchings always exist.\r\nUsing our
new framework, we establish, for the first time, a complete, rigorous definition
of weighted straight skeletons, which are based on a so-called wavefront propagation
process. We present a generalized and unified approach to treat structural changes
in the wavefront that focuses on the restoration of weak planarity by finding
planar matchings."
acknowledgement: 'T. Biedl was supported by NSERC and the Ross and Muriel Cheriton
Fellowship. P. Palfrader was supported by Austrian Science Fund (FWF): P25816-N15.'
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Therese
full_name: Biedl, Therese
last_name: Biedl
- first_name: Stefan
full_name: Huber, Stefan
id: 4700A070-F248-11E8-B48F-1D18A9856A87
last_name: Huber
orcid: 0000-0002-8871-5814
- first_name: Peter
full_name: Palfrader, Peter
last_name: Palfrader
citation:
ama: 'Biedl T, Huber S, Palfrader P. Planar matchings for weighted straight skeletons.
In: 25th International Symposium, ISAAC 2014. Vol 8889. Springer Nature;
2014:117-127. doi:10.1007/978-3-319-13075-0_10'
apa: 'Biedl, T., Huber, S., & Palfrader, P. (2014). Planar matchings for weighted
straight skeletons. In 25th International Symposium, ISAAC 2014 (Vol. 8889,
pp. 117–127). Jeonju, Korea: Springer Nature. https://doi.org/10.1007/978-3-319-13075-0_10'
chicago: Biedl, Therese, Stefan Huber, and Peter Palfrader. “Planar Matchings for
Weighted Straight Skeletons.” In 25th International Symposium, ISAAC 2014,
8889:117–27. Springer Nature, 2014. https://doi.org/10.1007/978-3-319-13075-0_10.
ieee: T. Biedl, S. Huber, and P. Palfrader, “Planar matchings for weighted straight
skeletons,” in 25th International Symposium, ISAAC 2014, Jeonju, Korea,
2014, vol. 8889, pp. 117–127.
ista: 'Biedl T, Huber S, Palfrader P. 2014. Planar matchings for weighted straight
skeletons. 25th International Symposium, ISAAC 2014. ISAAC: International Symposium
on Algorithms and Computation, LNCS, vol. 8889, 117–127.'
mla: Biedl, Therese, et al. “Planar Matchings for Weighted Straight Skeletons.”
25th International Symposium, ISAAC 2014, vol. 8889, Springer Nature, 2014,
pp. 117–27, doi:10.1007/978-3-319-13075-0_10.
short: T. Biedl, S. Huber, P. Palfrader, in:, 25th International Symposium, ISAAC
2014, Springer Nature, 2014, pp. 117–127.
conference:
end_date: 2014-12-17
location: Jeonju, Korea
name: 'ISAAC: International Symposium on Algorithms and Computation'
start_date: 2014-12-15
date_created: 2022-03-21T07:09:03Z
date_published: 2014-11-08T00:00:00Z
date_updated: 2023-02-23T12:20:55Z
day: '08'
department:
- _id: HeEd
doi: 10.1007/978-3-319-13075-0_10
intvolume: ' 8889'
language:
- iso: eng
month: '11'
oa_version: None
page: 117-127
publication: 25th International Symposium, ISAAC 2014
publication_identifier:
eisbn:
- '9783319130750'
eissn:
- 1611-3349
isbn:
- '9783319130743'
issn:
- 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
record:
- id: '481'
relation: later_version
status: public
scopus_import: '1'
status: public
title: Planar matchings for weighted straight skeletons
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8889
year: '2014'
...
---
_id: '6853'
abstract:
- lang: eng
text: This monograph presents a short course in computational geometry and topology.
In the first part the book covers Voronoi diagrams and Delaunay triangulations,
then it presents the theory of alpha complexes which play a crucial role in biology.
The central part of the book is the homology theory and their computation, including
the theory of persistence which is indispensable for applications, e.g. shape
reconstruction. The target audience comprises researchers and practitioners in
mathematics, biology, neuroscience and computer science, but the book may also
be beneficial to graduate students of these fields.
alternative_title:
- SpringerBriefs in Applied Sciences and Technology
article_processing_charge: No
author:
- first_name: Herbert
full_name: Edelsbrunner, Herbert
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
citation:
ama: 'Edelsbrunner H. A Short Course in Computational Geometry and Topology.
1st ed. Cham: Springer Nature; 2014. doi:10.1007/978-3-319-05957-0'
apa: 'Edelsbrunner, H. (2014). A Short Course in Computational Geometry and Topology
(1st ed.). Cham: Springer Nature. https://doi.org/10.1007/978-3-319-05957-0'
chicago: 'Edelsbrunner, Herbert. A Short Course in Computational Geometry and
Topology. 1st ed. SpringerBriefs in Applied Sciences and Technology. Cham:
Springer Nature, 2014. https://doi.org/10.1007/978-3-319-05957-0.'
ieee: 'H. Edelsbrunner, A Short Course in Computational Geometry and Topology,
1st ed. Cham: Springer Nature, 2014.'
ista: 'Edelsbrunner H. 2014. A Short Course in Computational Geometry and Topology
1st ed., Cham: Springer Nature, IX, 110p.'
mla: Edelsbrunner, Herbert. A Short Course in Computational Geometry and Topology.
1st ed., Springer Nature, 2014, doi:10.1007/978-3-319-05957-0.
short: H. Edelsbrunner, A Short Course in Computational Geometry and Topology, 1st
ed., Springer Nature, Cham, 2014.
date_created: 2019-09-06T09:22:33Z
date_published: 2014-01-01T00:00:00Z
date_updated: 2022-03-04T07:47:54Z
day: '01'
department:
- _id: HeEd
doi: 10.1007/978-3-319-05957-0
edition: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: IX, 110
place: Cham
publication_identifier:
eisbn:
- 9-783-3190-5957-0
eissn:
- 2191-5318
isbn:
- 9-783-3190-5956-3
issn:
- 2191-530X
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
link:
- description: available as eBook via catalog IST BookList
relation: other
url: https://koha.app.ist.ac.at/cgi-bin/koha/opac-detail.pl?biblionumber=356106
- description: available via catalog IST BookList
relation: other
url: https://koha.app.ist.ac.at/cgi-bin/koha/opac-detail.pl?biblionumber=373842
scopus_import: '1'
series_title: SpringerBriefs in Applied Sciences and Technology
status: public
title: A Short Course in Computational Geometry and Topology
type: book
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2014'
...
---
_id: '10886'
abstract:
- lang: eng
text: We propose a method for visualizing two-dimensional symmetric positive definite
tensor fields using the Heat Kernel Signature (HKS). The HKS is derived from the
heat kernel and was originally introduced as an isometry invariant shape signature.
Each positive definite tensor field defines a Riemannian manifold by considering
the tensor field as a Riemannian metric. On this Riemmanian manifold we can apply
the definition of the HKS. The resulting scalar quantity is used for the visualization
of tensor fields. The HKS is closely related to the Gaussian curvature of the
Riemannian manifold and the time parameter of the heat kernel allows a multiscale
analysis in a natural way. In this way, the HKS represents field related scale
space properties, enabling a level of detail analysis of tensor fields. This makes
the HKS an interesting new scalar quantity for tensor fields, which differs significantly
from usual tensor invariants like the trace or the determinant. A method for visualization
and a numerical realization of the HKS for tensor fields is proposed in this chapter.
To validate the approach we apply it to some illustrating simple examples as isolated
critical points and to a medical diffusion tensor data set.
acknowledgement: This research is partially supported by the TOPOSYS project FP7-ICT-318493-STREP.
alternative_title:
- Mathematics and Visualization
article_processing_charge: No
author:
- first_name: Valentin
full_name: Zobel, Valentin
last_name: Zobel
- first_name: Jan
full_name: Reininghaus, Jan
id: 4505473A-F248-11E8-B48F-1D18A9856A87
last_name: Reininghaus
- first_name: Ingrid
full_name: Hotz, Ingrid
last_name: Hotz
citation:
ama: 'Zobel V, Reininghaus J, Hotz I. Visualization of two-dimensional symmetric
positive definite tensor fields using the heat kernel signature. In: Topological
Methods in Data Analysis and Visualization III . Springer; 2014:249-262. doi:10.1007/978-3-319-04099-8_16'
apa: Zobel, V., Reininghaus, J., & Hotz, I. (2014). Visualization of two-dimensional
symmetric positive definite tensor fields using the heat kernel signature. In
Topological Methods in Data Analysis and Visualization III (pp. 249–262).
Springer. https://doi.org/10.1007/978-3-319-04099-8_16
chicago: Zobel, Valentin, Jan Reininghaus, and Ingrid Hotz. “Visualization of Two-Dimensional
Symmetric Positive Definite Tensor Fields Using the Heat Kernel Signature.” In
Topological Methods in Data Analysis and Visualization III , 249–62. Springer,
2014. https://doi.org/10.1007/978-3-319-04099-8_16.
ieee: V. Zobel, J. Reininghaus, and I. Hotz, “Visualization of two-dimensional symmetric
positive definite tensor fields using the heat kernel signature,” in Topological
Methods in Data Analysis and Visualization III , 2014, pp. 249–262.
ista: Zobel V, Reininghaus J, Hotz I. 2014. Visualization of two-dimensional symmetric
positive definite tensor fields using the heat kernel signature. Topological Methods
in Data Analysis and Visualization III . , Mathematics and Visualization, , 249–262.
mla: Zobel, Valentin, et al. “Visualization of Two-Dimensional Symmetric Positive
Definite Tensor Fields Using the Heat Kernel Signature.” Topological Methods
in Data Analysis and Visualization III , Springer, 2014, pp. 249–62, doi:10.1007/978-3-319-04099-8_16.
short: V. Zobel, J. Reininghaus, I. Hotz, in:, Topological Methods in Data Analysis
and Visualization III , Springer, 2014, pp. 249–262.
date_created: 2022-03-18T13:05:39Z
date_published: 2014-03-19T00:00:00Z
date_updated: 2023-09-05T14:13:16Z
day: '19'
department:
- _id: HeEd
doi: 10.1007/978-3-319-04099-8_16
language:
- iso: eng
month: '03'
oa_version: None
page: 249-262
publication: 'Topological Methods in Data Analysis and Visualization III '
publication_identifier:
eisbn:
- '9783319040998'
eissn:
- 2197-666X
isbn:
- '9783319040981'
issn:
- 1612-3786
publication_status: published
publisher: Springer
quality_controlled: '1'
scopus_import: '1'
status: public
title: Visualization of two-dimensional symmetric positive definite tensor fields
using the heat kernel signature
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2014'
...
---
_id: '10817'
abstract:
- lang: eng
text: The Morse-Smale complex can be either explicitly or implicitly represented.
Depending on the type of representation, the simplification of the Morse-Smale
complex works differently. In the explicit representation, the Morse-Smale complex
is directly simplified by explicitly reconnecting the critical points during the
simplification. In the implicit representation, on the other hand, the Morse-Smale
complex is given by a combinatorial gradient field. In this setting, the simplification
changes the combinatorial flow, which yields an indirect simplification of the
Morse-Smale complex. The topological complexity of the Morse-Smale complex is
reduced in both representations. However, the simplifications generally yield
different results. In this chapter, we emphasize properties of the two representations
that cause these differences. We also provide a complexity analysis of the two
schemes with respect to running time and memory consumption.
acknowledgement: This research is supported and funded by the Digiteo unTopoVis project,
the TOPOSYS project FP7-ICT-318493-STREP, and MPC-VCC.
article_processing_charge: No
author:
- first_name: David
full_name: Günther, David
last_name: Günther
- first_name: Jan
full_name: Reininghaus, Jan
id: 4505473A-F248-11E8-B48F-1D18A9856A87
last_name: Reininghaus
- first_name: Hans-Peter
full_name: Seidel, Hans-Peter
last_name: Seidel
- first_name: Tino
full_name: Weinkauf, Tino
last_name: Weinkauf
citation:
ama: 'Günther D, Reininghaus J, Seidel H-P, Weinkauf T. Notes on the simplification
of the Morse-Smale complex. In: Bremer P-T, Hotz I, Pascucci V, Peikert R, eds.
Topological Methods in Data Analysis and Visualization III. Mathematics
and Visualization. Cham: Springer Nature; 2014:135-150. doi:10.1007/978-3-319-04099-8_9'
apa: 'Günther, D., Reininghaus, J., Seidel, H.-P., & Weinkauf, T. (2014). Notes
on the simplification of the Morse-Smale complex. In P.-T. Bremer, I. Hotz, V.
Pascucci, & R. Peikert (Eds.), Topological Methods in Data Analysis and
Visualization III. (pp. 135–150). Cham: Springer Nature. https://doi.org/10.1007/978-3-319-04099-8_9'
chicago: 'Günther, David, Jan Reininghaus, Hans-Peter Seidel, and Tino Weinkauf.
“Notes on the Simplification of the Morse-Smale Complex.” In Topological Methods
in Data Analysis and Visualization III., edited by Peer-Timo Bremer, Ingrid
Hotz, Valerio Pascucci, and Ronald Peikert, 135–50. Mathematics and Visualization.
Cham: Springer Nature, 2014. https://doi.org/10.1007/978-3-319-04099-8_9.'
ieee: 'D. Günther, J. Reininghaus, H.-P. Seidel, and T. Weinkauf, “Notes on the
simplification of the Morse-Smale complex,” in Topological Methods in Data
Analysis and Visualization III., P.-T. Bremer, I. Hotz, V. Pascucci, and R.
Peikert, Eds. Cham: Springer Nature, 2014, pp. 135–150.'
ista: 'Günther D, Reininghaus J, Seidel H-P, Weinkauf T. 2014.Notes on the simplification
of the Morse-Smale complex. In: Topological Methods in Data Analysis and Visualization
III. , 135–150.'
mla: Günther, David, et al. “Notes on the Simplification of the Morse-Smale Complex.”
Topological Methods in Data Analysis and Visualization III., edited by
Peer-Timo Bremer et al., Springer Nature, 2014, pp. 135–50, doi:10.1007/978-3-319-04099-8_9.
short: D. Günther, J. Reininghaus, H.-P. Seidel, T. Weinkauf, in:, P.-T. Bremer,
I. Hotz, V. Pascucci, R. Peikert (Eds.), Topological Methods in Data Analysis
and Visualization III., Springer Nature, Cham, 2014, pp. 135–150.
date_created: 2022-03-04T08:33:57Z
date_published: 2014-03-19T00:00:00Z
date_updated: 2023-09-05T15:33:45Z
day: '19'
department:
- _id: HeEd
doi: 10.1007/978-3-319-04099-8_9
ec_funded: 1
editor:
- first_name: Peer-Timo
full_name: Bremer, Peer-Timo
last_name: Bremer
- first_name: Ingrid
full_name: Hotz, Ingrid
last_name: Hotz
- first_name: Valerio
full_name: Pascucci, Valerio
last_name: Pascucci
- first_name: Ronald
full_name: Peikert, Ronald
last_name: Peikert
language:
- iso: eng
month: '03'
oa_version: None
page: 135-150
place: Cham
project:
- _id: 255D761E-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '318493'
name: Topological Complex Systems
publication: Topological Methods in Data Analysis and Visualization III.
publication_identifier:
eisbn:
- '9783319040998'
eissn:
- 2197-666X
isbn:
- '9783319040981'
issn:
- 1612-3786
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
series_title: Mathematics and Visualization
status: public
title: Notes on the simplification of the Morse-Smale complex
type: book_chapter
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2014'
...
---
_id: '2255'
abstract:
- lang: eng
text: Motivated by applications in biology, we present an algorithm for estimating
the length of tube-like shapes in 3-dimensional Euclidean space. In a first step,
we combine the tube formula of Weyl with integral geometric methods to obtain
an integral representation of the length, which we approximate using a variant
of the Koksma-Hlawka Theorem. In a second step, we use tools from computational
topology to decrease the dependence on small perturbations of the shape. We present
computational experiments that shed light on the stability and the convergence
rate of our algorithm.
author:
- first_name: Herbert
full_name: Edelsbrunner, Herbert
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
- first_name: Florian
full_name: Pausinger, Florian
id: 2A77D7A2-F248-11E8-B48F-1D18A9856A87
last_name: Pausinger
orcid: 0000-0002-8379-3768
citation:
ama: Edelsbrunner H, Pausinger F. Stable length estimates of tube-like shapes. Journal
of Mathematical Imaging and Vision. 2014;50(1):164-177. doi:10.1007/s10851-013-0468-x
apa: Edelsbrunner, H., & Pausinger, F. (2014). Stable length estimates of tube-like
shapes. Journal of Mathematical Imaging and Vision. Springer. https://doi.org/10.1007/s10851-013-0468-x
chicago: Edelsbrunner, Herbert, and Florian Pausinger. “Stable Length Estimates
of Tube-like Shapes.” Journal of Mathematical Imaging and Vision. Springer,
2014. https://doi.org/10.1007/s10851-013-0468-x.
ieee: H. Edelsbrunner and F. Pausinger, “Stable length estimates of tube-like shapes,”
Journal of Mathematical Imaging and Vision, vol. 50, no. 1. Springer, pp.
164–177, 2014.
ista: Edelsbrunner H, Pausinger F. 2014. Stable length estimates of tube-like shapes.
Journal of Mathematical Imaging and Vision. 50(1), 164–177.
mla: Edelsbrunner, Herbert, and Florian Pausinger. “Stable Length Estimates of Tube-like
Shapes.” Journal of Mathematical Imaging and Vision, vol. 50, no. 1, Springer,
2014, pp. 164–77, doi:10.1007/s10851-013-0468-x.
short: H. Edelsbrunner, F. Pausinger, Journal of Mathematical Imaging and Vision
50 (2014) 164–177.
date_created: 2018-12-11T11:56:36Z
date_published: 2014-09-01T00:00:00Z
date_updated: 2023-09-07T11:41:25Z
day: '01'
ddc:
- '000'
department:
- _id: HeEd
doi: 10.1007/s10851-013-0468-x
ec_funded: 1
file:
- access_level: open_access
checksum: 2f93f3e63a38a85cd4404d7953913b14
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:16:18Z
date_updated: 2020-07-14T12:45:35Z
file_id: '5204'
file_name: IST-2016-549-v1+1_2014-J-06-LengthEstimate.pdf
file_size: 3941391
relation: main_file
file_date_updated: 2020-07-14T12:45:35Z
has_accepted_license: '1'
intvolume: ' 50'
issue: '1'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Submitted Version
page: 164 - 177
project:
- _id: 255D761E-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '318493'
name: Topological Complex Systems
publication: Journal of Mathematical Imaging and Vision
publication_identifier:
issn:
- '09249907'
publication_status: published
publisher: Springer
publist_id: '4691'
pubrep_id: '549'
quality_controlled: '1'
related_material:
record:
- id: '2843'
relation: earlier_version
status: public
- id: '1399'
relation: dissertation_contains
status: public
scopus_import: 1
status: public
title: Stable length estimates of tube-like shapes
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 50
year: '2014'
...
---
_id: '10894'
abstract:
- lang: eng
text: PHAT is a C++ library for the computation of persistent homology by matrix
reduction. We aim for a simple generic design that decouples algorithms from data
structures without sacrificing efficiency or user-friendliness. This makes PHAT
a versatile platform for experimenting with algorithmic ideas and comparing them
to state of the art implementations.
article_processing_charge: No
author:
- first_name: Ulrich
full_name: Bauer, Ulrich
id: 2ADD483A-F248-11E8-B48F-1D18A9856A87
last_name: Bauer
orcid: 0000-0002-9683-0724
- first_name: Michael
full_name: Kerber, Michael
last_name: Kerber
- first_name: Jan
full_name: Reininghaus, Jan
id: 4505473A-F248-11E8-B48F-1D18A9856A87
last_name: Reininghaus
- first_name: Hubert
full_name: Wagner, Hubert
last_name: Wagner
citation:
ama: 'Bauer U, Kerber M, Reininghaus J, Wagner H. PHAT – Persistent Homology Algorithms
Toolbox. In: ICMS 2014: International Congress on Mathematical Software.
Vol 8592. LNCS. Berlin, Heidelberg: Springer Berlin Heidelberg; 2014:137-143.
doi:10.1007/978-3-662-44199-2_24'
apa: 'Bauer, U., Kerber, M., Reininghaus, J., & Wagner, H. (2014). PHAT – Persistent
Homology Algorithms Toolbox. In ICMS 2014: International Congress on Mathematical
Software (Vol. 8592, pp. 137–143). Berlin, Heidelberg: Springer Berlin Heidelberg.
https://doi.org/10.1007/978-3-662-44199-2_24'
chicago: 'Bauer, Ulrich, Michael Kerber, Jan Reininghaus, and Hubert Wagner. “PHAT
– Persistent Homology Algorithms Toolbox.” In ICMS 2014: International Congress
on Mathematical Software, 8592:137–43. LNCS. Berlin, Heidelberg: Springer
Berlin Heidelberg, 2014. https://doi.org/10.1007/978-3-662-44199-2_24.'
ieee: 'U. Bauer, M. Kerber, J. Reininghaus, and H. Wagner, “PHAT – Persistent Homology
Algorithms Toolbox,” in ICMS 2014: International Congress on Mathematical Software,
Seoul, South Korea, 2014, vol. 8592, pp. 137–143.'
ista: 'Bauer U, Kerber M, Reininghaus J, Wagner H. 2014. PHAT – Persistent Homology
Algorithms Toolbox. ICMS 2014: International Congress on Mathematical Software.
ICMS: International Congress on Mathematical SoftwareLNCS vol. 8592, 137–143.'
mla: 'Bauer, Ulrich, et al. “PHAT – Persistent Homology Algorithms Toolbox.” ICMS
2014: International Congress on Mathematical Software, vol. 8592, Springer
Berlin Heidelberg, 2014, pp. 137–43, doi:10.1007/978-3-662-44199-2_24.'
short: 'U. Bauer, M. Kerber, J. Reininghaus, H. Wagner, in:, ICMS 2014: International
Congress on Mathematical Software, Springer Berlin Heidelberg, Berlin, Heidelberg,
2014, pp. 137–143.'
conference:
end_date: 2014-08-09
location: Seoul, South Korea
name: 'ICMS: International Congress on Mathematical Software'
start_date: 2014-08-05
date_created: 2022-03-21T07:12:16Z
date_published: 2014-09-01T00:00:00Z
date_updated: 2023-09-20T09:42:40Z
day: '01'
department:
- _id: HeEd
doi: 10.1007/978-3-662-44199-2_24
intvolume: ' 8592'
language:
- iso: eng
month: '09'
oa_version: None
page: 137-143
place: Berlin, Heidelberg
publication: 'ICMS 2014: International Congress on Mathematical Software'
publication_identifier:
eisbn:
- '9783662441992'
eissn:
- 1611-3349
isbn:
- '9783662441985'
issn:
- 0302-9743
publication_status: published
publisher: Springer Berlin Heidelberg
quality_controlled: '1'
related_material:
record:
- id: '1433'
relation: later_version
status: public
scopus_import: '1'
series_title: LNCS
status: public
title: PHAT – Persistent Homology Algorithms Toolbox
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 8592
year: '2014'
...
---
_id: '2012'
abstract:
- lang: eng
text: The classical sphere packing problem asks for the best (infinite) arrangement
of non-overlapping unit balls which cover as much space as possible. We define
a generalized version of the problem, where we allow each ball a limited amount
of overlap with other balls. We study two natural choices of overlap measures
and obtain the optimal lattice packings in a parameterized family of lattices
which contains the FCC, BCC, and integer lattice.
acknowledgement: We thank Herbert Edelsbrunner for his valuable discussions and ideas
on the topic of this paper. The second author has been supported by the Max Planck
Center for Visual Computing and Communication
article_number: '1401.0468'
article_processing_charge: No
author:
- first_name: Mabel
full_name: Iglesias Ham, Mabel
id: 41B58C0C-F248-11E8-B48F-1D18A9856A87
last_name: Iglesias Ham
- first_name: Michael
full_name: Kerber, Michael
last_name: Kerber
orcid: 0000-0002-8030-9299
- first_name: Caroline
full_name: Uhler, Caroline
id: 49ADD78E-F248-11E8-B48F-1D18A9856A87
last_name: Uhler
orcid: 0000-0002-7008-0216
citation:
ama: Iglesias Ham M, Kerber M, Uhler C. Sphere packing with limited overlap. arXiv.
doi:10.48550/arXiv.1401.0468
apa: Iglesias Ham, M., Kerber, M., & Uhler, C. (n.d.). Sphere packing with limited
overlap. arXiv. https://doi.org/10.48550/arXiv.1401.0468
chicago: Iglesias Ham, Mabel, Michael Kerber, and Caroline Uhler. “Sphere Packing
with Limited Overlap.” ArXiv, n.d. https://doi.org/10.48550/arXiv.1401.0468.
ieee: M. Iglesias Ham, M. Kerber, and C. Uhler, “Sphere packing with limited overlap,”
arXiv. .
ista: Iglesias Ham M, Kerber M, Uhler C. Sphere packing with limited overlap. arXiv,
1401.0468.
mla: Iglesias Ham, Mabel, et al. “Sphere Packing with Limited Overlap.” ArXiv,
1401.0468, doi:10.48550/arXiv.1401.0468.
short: M. Iglesias Ham, M. Kerber, C. Uhler, ArXiv (n.d.).
date_created: 2018-12-11T11:55:12Z
date_published: 2014-01-01T00:00:00Z
date_updated: 2023-10-18T08:06:45Z
day: '01'
department:
- _id: HeEd
- _id: CaUh
doi: 10.48550/arXiv.1401.0468
external_id:
arxiv:
- '1401.0468'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://cccg.ca/proceedings/2014/papers/paper23.pdf
month: '01'
oa: 1
oa_version: Submitted Version
publication: arXiv
publication_status: submitted
publist_id: '5064'
status: public
title: Sphere packing with limited overlap
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2014'
...
---
_id: '2209'
abstract:
- lang: eng
text: "A straight skeleton is a well-known geometric structure, and several algorithms
exist to construct the straight skeleton for a given polygon or planar straight-line
graph. In this paper, we ask the reverse question: Given the straight skeleton
(in form of a planar straight-line graph, with some rays to infinity), can we
reconstruct a planar straight-line graph for which this was the straight skeleton?
We show how to reduce this problem to the problem of finding a line that intersects
a set of convex polygons. We can find these convex polygons and all such lines
in $O(nlog n)$ time in the Real RAM computer model, where $n$ denotes the number
of edges of the input graph. We also explain how our approach can be used for
recognizing Voronoi diagrams of points, thereby completing a partial solution
provided by Ash and Bolker in 1985.\r\n"
alternative_title:
- '2013 10th International Symposium on Voronoi Diagrams in Science and Engineering
(ISVD 2013) '
author:
- first_name: Therese
full_name: Biedl, Therese
last_name: Biedl
- first_name: Martin
full_name: Held, Martin
last_name: Held
- first_name: Stefan
full_name: Huber, Stefan
id: 4700A070-F248-11E8-B48F-1D18A9856A87
last_name: Huber
orcid: 0000-0002-8871-5814
citation:
ama: 'Biedl T, Held M, Huber S. Recognizing straight skeletons and Voronoi diagrams
and reconstructing their input. In: IEEE; 2013:37-46. doi:10.1109/ISVD.2013.11'
apa: 'Biedl, T., Held, M., & Huber, S. (2013). Recognizing straight skeletons
and Voronoi diagrams and reconstructing their input (pp. 37–46). Presented at
the ISVD: Voronoi Diagrams in Science and Engineering, St. Petersburg, Russia:
IEEE. https://doi.org/10.1109/ISVD.2013.11'
chicago: Biedl, Therese, Martin Held, and Stefan Huber. “Recognizing Straight Skeletons
and Voronoi Diagrams and Reconstructing Their Input,” 37–46. IEEE, 2013. https://doi.org/10.1109/ISVD.2013.11.
ieee: 'T. Biedl, M. Held, and S. Huber, “Recognizing straight skeletons and Voronoi
diagrams and reconstructing their input,” presented at the ISVD: Voronoi Diagrams
in Science and Engineering, St. Petersburg, Russia, 2013, pp. 37–46.'
ista: 'Biedl T, Held M, Huber S. 2013. Recognizing straight skeletons and Voronoi
diagrams and reconstructing their input. ISVD: Voronoi Diagrams in Science and
Engineering, 2013 10th International Symposium on Voronoi Diagrams in Science
and Engineering (ISVD 2013) , , 37–46.'
mla: Biedl, Therese, et al. Recognizing Straight Skeletons and Voronoi Diagrams
and Reconstructing Their Input. IEEE, 2013, pp. 37–46, doi:10.1109/ISVD.2013.11.
short: T. Biedl, M. Held, S. Huber, in:, IEEE, 2013, pp. 37–46.
conference:
end_date: 2013-07-10
location: St. Petersburg, Russia
name: 'ISVD: Voronoi Diagrams in Science and Engineering'
start_date: 2013-07-08
date_created: 2018-12-11T11:56:20Z
date_published: 2013-12-01T00:00:00Z
date_updated: 2021-01-12T06:56:00Z
day: '01'
department:
- _id: HeEd
doi: 10.1109/ISVD.2013.11
language:
- iso: eng
month: '12'
oa_version: None
page: 37 - 46
publication_identifier:
eisbn:
- '978-0-7695-5037-4 '
publication_status: published
publisher: IEEE
publist_id: '4763'
quality_controlled: '1'
scopus_import: 1
status: public
title: Recognizing straight skeletons and Voronoi diagrams and reconstructing their
input
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '2210'
abstract:
- lang: eng
text: 'A straight skeleton is a well-known geometric structure, and several algorithms
exist to construct the straight skeleton for a given polygon. In this paper, we
ask the reverse question: Given the straight skeleton (in form of a tree with
a drawing in the plane, but with the exact position of the leaves unspecified),
can we reconstruct the polygon? We show that in most cases there exists at most
one polygon; in the remaining case there is an infinite number of polygons determined
by one angle that can range in an interval. We can find this (set of) polygon(s)
in linear time in the Real RAM computer model.'
author:
- first_name: Therese
full_name: Biedl, Therese
last_name: Biedl
- first_name: Martin
full_name: Held, Martin
last_name: Held
- first_name: Stefan
full_name: Huber, Stefan
id: 4700A070-F248-11E8-B48F-1D18A9856A87
last_name: Huber
orcid: 0000-0002-8871-5814
citation:
ama: 'Biedl T, Held M, Huber S. Reconstructing polygons from embedded straight skeletons.
In: 29th European Workshop on Computational Geometry. TU Braunschweig;
2013:95-98.'
apa: 'Biedl, T., Held, M., & Huber, S. (2013). Reconstructing polygons from
embedded straight skeletons. In 29th European Workshop on Computational Geometry
(pp. 95–98). Braunschweig, Germany: TU Braunschweig.'
chicago: Biedl, Therese, Martin Held, and Stefan Huber. “Reconstructing Polygons
from Embedded Straight Skeletons.” In 29th European Workshop on Computational
Geometry, 95–98. TU Braunschweig, 2013.
ieee: T. Biedl, M. Held, and S. Huber, “Reconstructing polygons from embedded straight
skeletons,” in 29th European Workshop on Computational Geometry, Braunschweig,
Germany, 2013, pp. 95–98.
ista: 'Biedl T, Held M, Huber S. 2013. Reconstructing polygons from embedded straight
skeletons. 29th European Workshop on Computational Geometry. EuroCG: European
Workshop on Computational Geometry, 95–98.'
mla: Biedl, Therese, et al. “Reconstructing Polygons from Embedded Straight Skeletons.”
29th European Workshop on Computational Geometry, TU Braunschweig, 2013,
pp. 95–98.
short: T. Biedl, M. Held, S. Huber, in:, 29th European Workshop on Computational
Geometry, TU Braunschweig, 2013, pp. 95–98.
conference:
end_date: 2013-03-20
location: Braunschweig, Germany
name: 'EuroCG: European Workshop on Computational Geometry'
start_date: 2013-03-17
date_created: 2018-12-11T11:56:21Z
date_published: 2013-03-01T00:00:00Z
date_updated: 2021-01-12T06:56:00Z
day: '01'
department:
- _id: HeEd
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://www.ibr.cs.tu-bs.de/alg/eurocg13/booklet_eurocg13.pdf
month: '03'
oa: 1
oa_version: Submitted Version
page: 95 - 98
publication: 29th European Workshop on Computational Geometry
publication_status: published
publisher: TU Braunschweig
publist_id: '4762'
status: public
title: Reconstructing polygons from embedded straight skeletons
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '2304'
abstract:
- lang: eng
text: This extended abstract is concerned with the irregularities of distribution
of one-dimensional permuted van der Corput sequences that are generated from linear
permutations. We show how to obtain upper bounds for the discrepancy and diaphony
of these sequences, by relating them to Kronecker sequences and applying earlier
results of Faure and Niederreiter.
acknowledgement: This research is supported by the Graduate school of IST Austria
(Institute of Science and Technology Austria).
author:
- first_name: Florian
full_name: Pausinger, Florian
id: 2A77D7A2-F248-11E8-B48F-1D18A9856A87
last_name: Pausinger
orcid: 0000-0002-8379-3768
citation:
ama: Pausinger F. Van der Corput sequences and linear permutations. Electronic
Notes in Discrete Mathematics. 2013;43:43-50. doi:10.1016/j.endm.2013.07.008
apa: Pausinger, F. (2013). Van der Corput sequences and linear permutations. Electronic
Notes in Discrete Mathematics. Elsevier. https://doi.org/10.1016/j.endm.2013.07.008
chicago: Pausinger, Florian. “Van Der Corput Sequences and Linear Permutations.”
Electronic Notes in Discrete Mathematics. Elsevier, 2013. https://doi.org/10.1016/j.endm.2013.07.008.
ieee: F. Pausinger, “Van der Corput sequences and linear permutations,” Electronic
Notes in Discrete Mathematics, vol. 43. Elsevier, pp. 43–50, 2013.
ista: Pausinger F. 2013. Van der Corput sequences and linear permutations. Electronic
Notes in Discrete Mathematics. 43, 43–50.
mla: Pausinger, Florian. “Van Der Corput Sequences and Linear Permutations.” Electronic
Notes in Discrete Mathematics, vol. 43, Elsevier, 2013, pp. 43–50, doi:10.1016/j.endm.2013.07.008.
short: F. Pausinger, Electronic Notes in Discrete Mathematics 43 (2013) 43–50.
date_created: 2018-12-11T11:56:53Z
date_published: 2013-09-05T00:00:00Z
date_updated: 2021-01-12T06:56:39Z
day: '05'
department:
- _id: HeEd
doi: 10.1016/j.endm.2013.07.008
intvolume: ' 43'
language:
- iso: eng
month: '09'
oa_version: None
page: 43 - 50
publication: Electronic Notes in Discrete Mathematics
publication_status: published
publisher: Elsevier
publist_id: '4623'
quality_controlled: '1'
scopus_import: 1
status: public
title: Van der Corput sequences and linear permutations
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 43
year: '2013'
...
---
_id: '2807'
abstract:
- lang: eng
text: 'We consider several basic problems of algebraic topology, with connections
to combinatorial and geometric questions, from the point of view of computational
complexity. The extension problem asks, given topological spaces X; Y , a subspace
A ⊆ X, and a (continuous) map f : A → Y , whether f can be extended to a map X
→ Y . For computational purposes, we assume that X and Y are represented as finite
simplicial complexes, A is a subcomplex of X, and f is given as a simplicial map.
In this generality the problem is undecidable, as follows from Novikov''s result
from the 1950s on uncomputability of the fundamental group π1(Y ). We thus study
the problem under the assumption that, for some k ≥ 2, Y is (k - 1)-connected;
informally, this means that Y has \no holes up to dimension k-1" (a basic
example of such a Y is the sphere Sk). We prove that, on the one hand, this problem
is still undecidable for dimX = 2k. On the other hand, for every fixed k ≥ 2,
we obtain an algorithm that solves the extension problem in polynomial time assuming
Y (k - 1)-connected and dimX ≤ 2k - 1. For dimX ≤ 2k - 2, the algorithm also provides
a classification of all extensions up to homotopy (continuous deformation). This
relies on results of our SODA 2012 paper, and the main new ingredient is a machinery
of objects with polynomial-time homology, which is a polynomial-time analog of
objects with effective homology developed earlier by Sergeraert et al. We also
consider the computation of the higher homotopy groups πk(Y ), k ≥ 2, for a 1-connected
Y . Their computability was established by Brown in 1957; we show that πk(Y )
can be computed in polynomial time for every fixed k ≥ 2. On the other hand, Anick
proved in 1989 that computing πk(Y ) is #P-hard if k is a part of input, where
Y is a cell complex with certain rather compact encoding. We strengthen his result
to #P-hardness for Y given as a simplicial complex. '
author:
- first_name: Martin
full_name: Čadek, Martin
last_name: Čadek
- first_name: Marek
full_name: Krcál, Marek
id: 33E21118-F248-11E8-B48F-1D18A9856A87
last_name: Krcál
- first_name: Jiří
full_name: Matoušek, Jiří
last_name: Matoušek
- first_name: Lukáš
full_name: Vokřínek, Lukáš
last_name: Vokřínek
- first_name: Uli
full_name: Wagner, Uli
id: 36690CA2-F248-11E8-B48F-1D18A9856A87
last_name: Wagner
orcid: 0000-0002-1494-0568
citation:
ama: 'Čadek M, Krcál M, Matoušek J, Vokřínek L, Wagner U. Extending continuous maps:
Polynomiality and undecidability. In: 45th Annual ACM Symposium on Theory of
Computing. ACM; 2013:595-604. doi:10.1145/2488608.2488683'
apa: 'Čadek, M., Krcál, M., Matoušek, J., Vokřínek, L., & Wagner, U. (2013).
Extending continuous maps: Polynomiality and undecidability. In 45th Annual
ACM Symposium on theory of computing (pp. 595–604). Palo Alto, CA, United
States: ACM. https://doi.org/10.1145/2488608.2488683'
chicago: 'Čadek, Martin, Marek Krcál, Jiří Matoušek, Lukáš Vokřínek, and Uli Wagner.
“Extending Continuous Maps: Polynomiality and Undecidability.” In 45th Annual
ACM Symposium on Theory of Computing, 595–604. ACM, 2013. https://doi.org/10.1145/2488608.2488683.'
ieee: 'M. Čadek, M. Krcál, J. Matoušek, L. Vokřínek, and U. Wagner, “Extending continuous
maps: Polynomiality and undecidability,” in 45th Annual ACM Symposium on theory
of computing, Palo Alto, CA, United States, 2013, pp. 595–604.'
ista: 'Čadek M, Krcál M, Matoušek J, Vokřínek L, Wagner U. 2013. Extending continuous
maps: Polynomiality and undecidability. 45th Annual ACM Symposium on theory of
computing. STOC: Symposium on the Theory of Computing, 595–604.'
mla: 'Čadek, Martin, et al. “Extending Continuous Maps: Polynomiality and Undecidability.”
45th Annual ACM Symposium on Theory of Computing, ACM, 2013, pp. 595–604,
doi:10.1145/2488608.2488683.'
short: M. Čadek, M. Krcál, J. Matoušek, L. Vokřínek, U. Wagner, in:, 45th Annual
ACM Symposium on Theory of Computing, ACM, 2013, pp. 595–604.
conference:
end_date: 2013-06-04
location: Palo Alto, CA, United States
name: 'STOC: Symposium on the Theory of Computing'
start_date: 2013-06-01
date_created: 2018-12-11T11:59:42Z
date_published: 2013-06-01T00:00:00Z
date_updated: 2021-01-12T06:59:51Z
day: '01'
ddc:
- '510'
department:
- _id: UlWa
- _id: HeEd
doi: 10.1145/2488608.2488683
file:
- access_level: open_access
checksum: 06c2ce5c1135fbc1f71ca15eeb242dcf
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:14:29Z
date_updated: 2020-07-14T12:45:48Z
file_id: '5081'
file_name: IST-2016-533-v1+1_Extending_continuous_maps_polynomiality_and_undecidability.pdf
file_size: 447945
relation: main_file
file_date_updated: 2020-07-14T12:45:48Z
has_accepted_license: '1'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Submitted Version
page: 595 - 604
publication: 45th Annual ACM Symposium on theory of computing
publication_status: published
publisher: ACM
publist_id: '4078'
pubrep_id: '533'
quality_controlled: '1'
scopus_import: 1
status: public
title: 'Extending continuous maps: Polynomiality and undecidability'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '2812'
abstract:
- lang: eng
text: 'We consider the problem of deciding whether the persistent homology group
of a simplicial pair (K, L) can be realized as the homology H* (X) of some complex
X with L ⊂ X ⊂ K. We show that this problem is NP-complete even if K is embedded
in ℝ3. As a consequence, we show that it is NP-hard to simplify level and sublevel
sets of scalar functions on S3 within a given tolerance constraint. This problem
has relevance to the visualization of medical images by isosurfaces. We also show
an implication to the theory of well groups of scalar functions: not every well
group can be realized by some level set, and deciding whether a well group can
be realized is NP-hard.'
acknowledgement: Some of the authors were partially supported by the GIGA ANR grant
(contract ANR-09-BLAN-0331-01) and the European project CG-Learning (contract 255827).
author:
- first_name: Dominique
full_name: Attali, Dominique
last_name: Attali
- first_name: Ulrich
full_name: Bauer, Ulrich
id: 2ADD483A-F248-11E8-B48F-1D18A9856A87
last_name: Bauer
orcid: 0000-0002-9683-0724
- first_name: Olivier
full_name: Devillers, Olivier
last_name: Devillers
- first_name: Marc
full_name: Glisse, Marc
last_name: Glisse
- first_name: André
full_name: Lieutier, André
last_name: Lieutier
citation:
ama: 'Attali D, Bauer U, Devillers O, Glisse M, Lieutier A. Homological reconstruction
and simplification in R3. In: Proceedings of the 29th Annual Symposium on Computational
Geometry. ACM; 2013:117-125. doi:10.1145/2462356.2462373'
apa: 'Attali, D., Bauer, U., Devillers, O., Glisse, M., & Lieutier, A. (2013).
Homological reconstruction and simplification in R3. In Proceedings of the
29th annual symposium on Computational Geometry (pp. 117–125). Rio de Janeiro,
Brazil: ACM. https://doi.org/10.1145/2462356.2462373'
chicago: Attali, Dominique, Ulrich Bauer, Olivier Devillers, Marc Glisse, and André
Lieutier. “Homological Reconstruction and Simplification in R3.” In Proceedings
of the 29th Annual Symposium on Computational Geometry, 117–25. ACM, 2013.
https://doi.org/10.1145/2462356.2462373.
ieee: D. Attali, U. Bauer, O. Devillers, M. Glisse, and A. Lieutier, “Homological
reconstruction and simplification in R3,” in Proceedings of the 29th annual
symposium on Computational Geometry, Rio de Janeiro, Brazil, 2013, pp. 117–125.
ista: 'Attali D, Bauer U, Devillers O, Glisse M, Lieutier A. 2013. Homological reconstruction
and simplification in R3. Proceedings of the 29th annual symposium on Computational
Geometry. SoCG: Symposium on Computational Geometry, 117–125.'
mla: Attali, Dominique, et al. “Homological Reconstruction and Simplification in
R3.” Proceedings of the 29th Annual Symposium on Computational Geometry,
ACM, 2013, pp. 117–25, doi:10.1145/2462356.2462373.
short: D. Attali, U. Bauer, O. Devillers, M. Glisse, A. Lieutier, in:, Proceedings
of the 29th Annual Symposium on Computational Geometry, ACM, 2013, pp. 117–125.
conference:
end_date: 2013-06-20
location: Rio de Janeiro, Brazil
name: 'SoCG: Symposium on Computational Geometry'
start_date: 2013-06-17
date_created: 2018-12-11T11:59:44Z
date_published: 2013-06-01T00:00:00Z
date_updated: 2023-02-23T10:15:15Z
day: '01'
department:
- _id: HeEd
doi: 10.1145/2462356.2462373
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://hal.archives-ouvertes.fr/hal-00833791/
month: '06'
oa: 1
oa_version: Submitted Version
page: 117 - 125
publication: Proceedings of the 29th annual symposium on Computational Geometry
publication_status: published
publisher: ACM
publist_id: '4072'
quality_controlled: '1'
related_material:
record:
- id: '1805'
relation: later_version
status: public
scopus_import: 1
status: public
title: Homological reconstruction and simplification in R3
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '2822'
abstract:
- lang: eng
text: Identification of genes that control root system architecture in crop plants
requires innovations that enable high-throughput and accurate measurements of
root system architecture through time. We demonstrate the ability of a semiautomated
3D in vivo imaging and digital phenotyping pipeline to interrogate the quantitative
genetic basis of root system growth in a rice biparental mapping population, Bala
x Azucena. We phenotyped >1,400 3D root models and >57,000 2D images for
a suite of 25 traits that quantified the distribution, shape, extent of exploration,
and the intrinsic size of root networks at days 12, 14, and 16 of growth in a
gellan gum medium. From these data we identified 89 quantitative trait loci, some
of which correspond to those found previously in soil-grown plants, and provide
evidence for genetic tradeoffs in root growth allocations, such as between the
extent and thoroughness of exploration. We also developed a multivariate method
for generating and mapping central root architecture phenotypes and used it to
identify five major quantitative trait loci (r2 = 24-37%), two of which were not
identified by our univariate analysis. Our imaging and analytical platform provides
a means to identify genes with high potential for improving root traits and agronomic
qualities of crops.
author:
- first_name: Christopher
full_name: Topp, Christopher
last_name: Topp
- first_name: Anjali
full_name: Iyer Pascuzzi, Anjali
last_name: Iyer Pascuzzi
- first_name: Jill
full_name: Anderson, Jill
last_name: Anderson
- first_name: Cheng
full_name: Lee, Cheng
last_name: Lee
- first_name: Paul
full_name: Zurek, Paul
last_name: Zurek
- first_name: Olga
full_name: Symonova, Olga
id: 3C0C7BC6-F248-11E8-B48F-1D18A9856A87
last_name: Symonova
- first_name: Ying
full_name: Zheng, Ying
last_name: Zheng
- first_name: Alexander
full_name: Bucksch, Alexander
last_name: Bucksch
- first_name: Yuriy
full_name: Mileyko, Yuriy
last_name: Mileyko
- first_name: Taras
full_name: Galkovskyi, Taras
last_name: Galkovskyi
- first_name: Brad
full_name: Moore, Brad
last_name: Moore
- first_name: John
full_name: Harer, John
last_name: Harer
- first_name: Herbert
full_name: Edelsbrunner, Herbert
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
- first_name: Thomas
full_name: Mitchell Olds, Thomas
last_name: Mitchell Olds
- first_name: Joshua
full_name: Weitz, Joshua
last_name: Weitz
- first_name: Philip
full_name: Benfey, Philip
last_name: Benfey
citation:
ama: Topp C, Iyer Pascuzzi A, Anderson J, et al. 3D phenotyping and quantitative
trait locus mapping identify core regions of the rice genome controlling root
architecture. PNAS. 2013;110(18):E1695-E1704. doi:10.1073/pnas.1304354110
apa: Topp, C., Iyer Pascuzzi, A., Anderson, J., Lee, C., Zurek, P., Symonova, O.,
… Benfey, P. (2013). 3D phenotyping and quantitative trait locus mapping identify
core regions of the rice genome controlling root architecture. PNAS. National
Academy of Sciences. https://doi.org/10.1073/pnas.1304354110
chicago: Topp, Christopher, Anjali Iyer Pascuzzi, Jill Anderson, Cheng Lee, Paul
Zurek, Olga Symonova, Ying Zheng, et al. “3D Phenotyping and Quantitative Trait
Locus Mapping Identify Core Regions of the Rice Genome Controlling Root Architecture.”
PNAS. National Academy of Sciences, 2013. https://doi.org/10.1073/pnas.1304354110.
ieee: C. Topp et al., “3D phenotyping and quantitative trait locus mapping
identify core regions of the rice genome controlling root architecture,” PNAS,
vol. 110, no. 18. National Academy of Sciences, pp. E1695–E1704, 2013.
ista: Topp C, Iyer Pascuzzi A, Anderson J, Lee C, Zurek P, Symonova O, Zheng Y,
Bucksch A, Mileyko Y, Galkovskyi T, Moore B, Harer J, Edelsbrunner H, Mitchell
Olds T, Weitz J, Benfey P. 2013. 3D phenotyping and quantitative trait locus mapping
identify core regions of the rice genome controlling root architecture. PNAS.
110(18), E1695–E1704.
mla: Topp, Christopher, et al. “3D Phenotyping and Quantitative Trait Locus Mapping
Identify Core Regions of the Rice Genome Controlling Root Architecture.” PNAS,
vol. 110, no. 18, National Academy of Sciences, 2013, pp. E1695–704, doi:10.1073/pnas.1304354110.
short: C. Topp, A. Iyer Pascuzzi, J. Anderson, C. Lee, P. Zurek, O. Symonova, Y.
Zheng, A. Bucksch, Y. Mileyko, T. Galkovskyi, B. Moore, J. Harer, H. Edelsbrunner,
T. Mitchell Olds, J. Weitz, P. Benfey, PNAS 110 (2013) E1695–E1704.
date_created: 2018-12-11T11:59:47Z
date_published: 2013-04-30T00:00:00Z
date_updated: 2021-01-12T06:59:58Z
day: '30'
department:
- _id: MaJö
- _id: HeEd
doi: 10.1073/pnas.1304354110
external_id:
pmid:
- '25673779'
intvolume: ' 110'
issue: '18'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4378147/
month: '04'
oa: 1
oa_version: Submitted Version
page: E1695 - E1704
pmid: 1
publication: PNAS
publication_status: published
publisher: National Academy of Sciences
publist_id: '3979'
quality_controlled: '1'
scopus_import: 1
status: public
title: 3D phenotyping and quantitative trait locus mapping identify core regions of
the rice genome controlling root architecture
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 110
year: '2013'
...
---
_id: '2843'
abstract:
- lang: eng
text: 'Mathematical objects can be measured unambiguously, but not so objects from
our physical world. Even the total length of tubelike shapes has its difficulties.
We introduce a combination of geometric, probabilistic, and topological methods
to design a stable length estimate for tube-like shapes; that is: one that is
insensitive to small shape changes.'
alternative_title:
- LNCS
author:
- first_name: Herbert
full_name: Edelsbrunner, Herbert
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
- first_name: Florian
full_name: Pausinger, Florian
id: 2A77D7A2-F248-11E8-B48F-1D18A9856A87
last_name: Pausinger
orcid: 0000-0002-8379-3768
citation:
ama: 'Edelsbrunner H, Pausinger F. Stable length estimates of tube-like shapes.
In: 17th IAPR International Conference on Discrete Geometry for Computer Imagery.
Vol 7749. Springer; 2013:XV-XIX. doi:10.1007/978-3-642-37067-0'
apa: 'Edelsbrunner, H., & Pausinger, F. (2013). Stable length estimates of tube-like
shapes. In 17th IAPR International Conference on Discrete Geometry for Computer
Imagery (Vol. 7749, pp. XV–XIX). Seville, Spain: Springer. https://doi.org/10.1007/978-3-642-37067-0'
chicago: Edelsbrunner, Herbert, and Florian Pausinger. “Stable Length Estimates
of Tube-like Shapes.” In 17th IAPR International Conference on Discrete Geometry
for Computer Imagery, 7749:XV–XIX. Springer, 2013. https://doi.org/10.1007/978-3-642-37067-0.
ieee: H. Edelsbrunner and F. Pausinger, “Stable length estimates of tube-like shapes,”
in 17th IAPR International Conference on Discrete Geometry for Computer Imagery,
Seville, Spain, 2013, vol. 7749, pp. XV–XIX.
ista: 'Edelsbrunner H, Pausinger F. 2013. Stable length estimates of tube-like shapes.
17th IAPR International Conference on Discrete Geometry for Computer Imagery.
DGCI: Discrete Geometry for Computer Imagery, LNCS, vol. 7749, XV–XIX.'
mla: Edelsbrunner, Herbert, and Florian Pausinger. “Stable Length Estimates of Tube-like
Shapes.” 17th IAPR International Conference on Discrete Geometry for Computer
Imagery, vol. 7749, Springer, 2013, pp. XV–XIX, doi:10.1007/978-3-642-37067-0.
short: H. Edelsbrunner, F. Pausinger, in:, 17th IAPR International Conference on
Discrete Geometry for Computer Imagery, Springer, 2013, pp. XV–XIX.
conference:
end_date: 2013-03-22
location: Seville, Spain
name: 'DGCI: Discrete Geometry for Computer Imagery'
start_date: 2013-03-20
date_created: 2018-12-11T11:59:53Z
date_published: 2013-02-21T00:00:00Z
date_updated: 2023-02-23T10:35:00Z
day: '21'
department:
- _id: HeEd
doi: 10.1007/978-3-642-37067-0
intvolume: ' 7749'
language:
- iso: eng
month: '02'
oa_version: None
page: XV - XIX
publication: 17th IAPR International Conference on Discrete Geometry for Computer
Imagery
publication_status: published
publisher: Springer
publist_id: '3952'
quality_controlled: '1'
related_material:
record:
- id: '2255'
relation: later_version
status: public
scopus_import: 1
status: public
title: Stable length estimates of tube-like shapes
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7749
year: '2013'
...
---
_id: '2859'
abstract:
- lang: eng
text: Given a continuous function f:X-R on a topological space, we consider the
preimages of intervals and their homology groups and show how to read the ranks
of these groups from the extended persistence diagram of f. In addition, we quantify
the robustness of the homology classes under perturbations of f using well groups,
and we show how to read the ranks of these groups from the same extended persistence
diagram. The special case X=R3 has ramifications in the fields of medical imaging
and scientific visualization.
author:
- first_name: Paul
full_name: Bendich, Paul
id: 43F6EC54-F248-11E8-B48F-1D18A9856A87
last_name: Bendich
- first_name: Herbert
full_name: Edelsbrunner, Herbert
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
- first_name: Dmitriy
full_name: Morozov, Dmitriy
last_name: Morozov
- first_name: Amit
full_name: Patel, Amit
id: 34A254A0-F248-11E8-B48F-1D18A9856A87
last_name: Patel
citation:
ama: Bendich P, Edelsbrunner H, Morozov D, Patel A. Homology and robustness of level
and interlevel sets. Homology, Homotopy and Applications. 2013;15(1):51-72.
doi:10.4310/HHA.2013.v15.n1.a3
apa: Bendich, P., Edelsbrunner, H., Morozov, D., & Patel, A. (2013). Homology
and robustness of level and interlevel sets. Homology, Homotopy and Applications.
International Press. https://doi.org/10.4310/HHA.2013.v15.n1.a3
chicago: Bendich, Paul, Herbert Edelsbrunner, Dmitriy Morozov, and Amit Patel. “Homology
and Robustness of Level and Interlevel Sets.” Homology, Homotopy and Applications.
International Press, 2013. https://doi.org/10.4310/HHA.2013.v15.n1.a3.
ieee: P. Bendich, H. Edelsbrunner, D. Morozov, and A. Patel, “Homology and robustness
of level and interlevel sets,” Homology, Homotopy and Applications, vol.
15, no. 1. International Press, pp. 51–72, 2013.
ista: Bendich P, Edelsbrunner H, Morozov D, Patel A. 2013. Homology and robustness
of level and interlevel sets. Homology, Homotopy and Applications. 15(1), 51–72.
mla: Bendich, Paul, et al. “Homology and Robustness of Level and Interlevel Sets.”
Homology, Homotopy and Applications, vol. 15, no. 1, International Press,
2013, pp. 51–72, doi:10.4310/HHA.2013.v15.n1.a3.
short: P. Bendich, H. Edelsbrunner, D. Morozov, A. Patel, Homology, Homotopy and
Applications 15 (2013) 51–72.
date_created: 2018-12-11T11:59:58Z
date_published: 2013-05-01T00:00:00Z
date_updated: 2021-01-12T07:00:18Z
day: '01'
department:
- _id: HeEd
doi: 10.4310/HHA.2013.v15.n1.a3
external_id:
arxiv:
- '1102.3389'
intvolume: ' 15'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1102.3389v1
month: '05'
oa: 1
oa_version: Preprint
page: 51 - 72
publication: Homology, Homotopy and Applications
publication_status: published
publisher: International Press
publist_id: '3930'
quality_controlled: '1'
scopus_import: 1
status: public
title: Homology and robustness of level and interlevel sets
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 15
year: '2013'
...
---
_id: '2887'
abstract:
- lang: eng
text: 'Root system growth and development is highly plastic and is influenced by
the surrounding environment. Roots frequently grow in heterogeneous environments
that include interactions from neighboring plants and physical impediments in
the rhizosphere. To investigate how planting density and physical objects affect
root system growth, we grew rice in a transparent gel system in close proximity
with another plant or a physical object. Root systems were imaged and reconstructed
in three dimensions. Root-root interaction strength was calculated using quantitative
metrics that characterize the extent towhich the reconstructed root systems overlap
each other. Surprisingly, we found the overlap of root systems of the same genotype
was significantly higher than that of root systems of different genotypes. Root
systems of the same genotype tended to grow toward each other but those of different
genotypes appeared to avoid each other. Shoot separation experiments excluded
the possibility of aerial interactions, suggesting root communication. Staggered
plantings indicated that interactions likely occur at root tips in close proximity.
Recognition of obstacles also occurred through root tips, but through physical
contact in a size-dependent manner. These results indicate that root systems use
two different forms of communication to recognize objects and alter root architecture:
root-root recognition, possibly mediated through root exudates, and root-object
recognition mediated by physical contact at the root tips. This finding suggests
that root tips act as local sensors that integrate rhizosphere information into
global root architectural changes.'
article_processing_charge: No
article_type: original
author:
- first_name: Suqin
full_name: Fang, Suqin
last_name: Fang
- first_name: Randy
full_name: Clark, Randy
last_name: Clark
- first_name: Ying
full_name: Zheng, Ying
last_name: Zheng
- first_name: Anjali
full_name: Iyer Pascuzzi, Anjali
last_name: Iyer Pascuzzi
- first_name: Joshua
full_name: Weitz, Joshua
last_name: Weitz
- first_name: Leon
full_name: Kochian, Leon
last_name: Kochian
- first_name: Herbert
full_name: Edelsbrunner, Herbert
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
- first_name: Hong
full_name: Liao, Hong
last_name: Liao
- first_name: Philip
full_name: Benfey, Philip
last_name: Benfey
citation:
ama: Fang S, Clark R, Zheng Y, et al. Genotypic recognition and spatial responses
by rice roots. PNAS. 2013;110(7):2670-2675. doi:10.1073/pnas.1222821110
apa: Fang, S., Clark, R., Zheng, Y., Iyer Pascuzzi, A., Weitz, J., Kochian, L.,
… Benfey, P. (2013). Genotypic recognition and spatial responses by rice roots.
PNAS. National Academy of Sciences. https://doi.org/10.1073/pnas.1222821110
chicago: Fang, Suqin, Randy Clark, Ying Zheng, Anjali Iyer Pascuzzi, Joshua Weitz,
Leon Kochian, Herbert Edelsbrunner, Hong Liao, and Philip Benfey. “Genotypic Recognition
and Spatial Responses by Rice Roots.” PNAS. National Academy of Sciences,
2013. https://doi.org/10.1073/pnas.1222821110.
ieee: S. Fang et al., “Genotypic recognition and spatial responses by rice
roots,” PNAS, vol. 110, no. 7. National Academy of Sciences, pp. 2670–2675,
2013.
ista: Fang S, Clark R, Zheng Y, Iyer Pascuzzi A, Weitz J, Kochian L, Edelsbrunner
H, Liao H, Benfey P. 2013. Genotypic recognition and spatial responses by rice
roots. PNAS. 110(7), 2670–2675.
mla: Fang, Suqin, et al. “Genotypic Recognition and Spatial Responses by Rice Roots.”
PNAS, vol. 110, no. 7, National Academy of Sciences, 2013, pp. 2670–75,
doi:10.1073/pnas.1222821110.
short: S. Fang, R. Clark, Y. Zheng, A. Iyer Pascuzzi, J. Weitz, L. Kochian, H. Edelsbrunner,
H. Liao, P. Benfey, PNAS 110 (2013) 2670–2675.
date_created: 2018-12-11T12:00:09Z
date_published: 2013-02-12T00:00:00Z
date_updated: 2021-01-12T07:00:29Z
day: '12'
department:
- _id: HeEd
doi: 10.1073/pnas.1222821110
external_id:
pmid:
- '23362379'
intvolume: ' 110'
issue: '7'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3574932/
month: '02'
oa: 1
oa_version: Published Version
page: 2670 - 2675
pmid: 1
publication: PNAS
publication_status: published
publisher: National Academy of Sciences
publist_id: '3872'
quality_controlled: '1'
scopus_import: 1
status: public
title: Genotypic recognition and spatial responses by rice roots
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 110
year: '2013'
...