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119 Publications

2018 | Journal Article | IST-REx-ID: 607   OA
Bodova, Katarina, et al. “Well Posedness and Maximum Entropy Approximation for the Dynamics of Quantitative Traits.” Physica D: Nonlinear Phenomena, vol. 376–377, Elsevier, 2018, pp. 108–20, doi:10.1016/j.physd.2017.10.015.
View | DOI | Download (ext.) | arXiv
 
2018 | Journal Article | IST-REx-ID: 19   OA
Palmer, Adam, et al. “Nonoptimal Gene Expression Creates Latent Potential for Antibiotic Resistance.” Molecular Biology and Evolution, vol. 35, no. 11, NLM , 2018, pp. 2669–84, doi:10.1093/molbev/msy163.
View | DOI | Download (ext.) | PubMed | Europe PMC
 
2018 | Preprint | IST-REx-ID: 196   OA
Lang, Moritz, and Mikhail Shkolnikov. “Harmonic Dynamics of the Abelian Sandpile.” ArXiv, ArXiv, 2018.
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2018 | Journal Article | IST-REx-ID: 305
Misun, Patrick, et al. “Fabrication and Operation of Microfluidic Hanging Drop Networks.” Methods in Molecular Biology, vol. 1771, Springer, 2018, pp. 183–202, doi:10.1007/978-1-4939-7792-5_15.
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2018 | Journal Article | IST-REx-ID: 406   OA
Bod’Ová, Katarína, et al. “Probabilistic Models of Individual and Collective Animal Behavior.” PLoS One, vol. 13, no. 3, Public Library of Science, 2018, doi:10.1371/journal.pone.0193049.
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2018 | Journal Article | IST-REx-ID: 292   OA
Botella Soler, Vicent, et al. “Nonlinear Decoding of a Complex Movie from the Mammalian Retina.” PLoS Computational Biology, vol. 14, no. 5, Public Library of Science, 2018, p. e1006057, doi:10.1371/journal.pcbi.1006057.
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2018 | Research Data | IST-REx-ID: 5584
Deny, Stephane, et al. Nonlinear Decoding of a Complex Movie from the Mammalian Retina. IST Austria, 2018, doi:10.15479/AT:ISTA:98.
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2018 | Journal Article | IST-REx-ID: 306   OA
De Martino, Andrea, and Daniele De Martino. “An Introduction to the Maximum Entropy Approach and Its Application to Inference Problems in Biology.” Heliyon, vol. 4, no. 4, e00596, Elsevier, 2018, doi:10.1016/j.heliyon.2018.e00596.
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2018 | Journal Article | IST-REx-ID: 457
Pleska, Maros, et al. “Phage-Host Population Dynamics Promotes Prophage Acquisition in Bacteria with Innate Immunity.” Nature Ecology and Evolution, vol. 2, no. 2, Springer Nature, 2018, pp. 359–66, doi:10.1038/s41559-017-0424-z.
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2018 | Journal Article | IST-REx-ID: 281   OA
Granados, Alejandro, et al. “Distributed and Dynamic Intracellular Organization of Extracellular Information.” PNAS, vol. 115, no. 23, National Academy of Sciences, 2018, pp. 6088–93, doi:10.1073/pnas.1716659115.
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2018 | Journal Article | IST-REx-ID: 161
De Martino, Daniele, et al. “Statistical Mechanics for Metabolic Networks during Steady State Growth.” Nature Communications, vol. 9, no. 1, 2988, Springer Nature, 2018, doi:10.1038/s41467-018-05417-9.
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2018 | Research Data | IST-REx-ID: 5585   OA
Igler, Claudia, et al. Data for the Paper Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring. IST Austria, 2018, doi:10.15479/AT:ISTA:108.
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2017 | Research Data | IST-REx-ID: 5562   OA
Marre, Olivier, et al. Multi-Electrode Array Recording from Salamander Retinal Ganglion Cells. IST Austria, 2017, doi:10.15479/AT:ISTA:61.
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2017 | Journal Article | IST-REx-ID: 725   OA
Harpaz, Roy, et al. “Discrete Modes of Social Information Processing Predict Individual Behavior of Fish in a Group.” PNAS, vol. 114, no. 38, National Academy of Sciences, 2017, pp. 10149–54, doi:10.1073/pnas.1703817114.
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2017 | Journal Article | IST-REx-ID: 1104   OA
Deny, Stephane, et al. “Multiplexed Computations in Retinal Ganglion Cells of a Single Type.” Nature Communications, vol. 8, no. 1, 1964, Nature Publishing Group, 2017, doi:10.1038/s41467-017-02159-y.
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2017 | Journal Article | IST-REx-ID: 720   OA
Humplik, Jan, and Gasper Tkacik. “Probabilistic Models for Neural Populations That Naturally Capture Global Coupling and Criticality.” PLoS Computational Biology, vol. 13, no. 9, e1005763, Public Library of Science, 2017, doi:10.1371/journal.pcbi.1005763.
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2017 | Journal Article | IST-REx-ID: 548   OA
De Martino, Daniele. “Maximum Entropy Modeling of Metabolic Networks by Constraining Growth-Rate Moments Predicts Coexistence of Phenotypes.” Physical Review E, vol. 96, no. 6, 060401, American Physiological Society, 2017, doi:10.1103/PhysRevE.96.060401.
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2017 | Journal Article | IST-REx-ID: 947   OA
De Martino, Daniele, et al. “Quantifying the Entropic Cost of Cellular Growth Control.” Physical Review E Statistical Nonlinear and Soft Matter Physics , vol. 96, no. 1, 010401, American Institute of Physics, 2017, doi:10.1103/PhysRevE.96.010401.
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2017 | Journal Article | IST-REx-ID: 959   OA
De Martino, Daniele. “Scales and Multimodal Flux Distributions in Stationary Metabolic Network Models via Thermodynamics.” Physical Review E Statistical Nonlinear and Soft Matter Physics , vol. 95, no. 6, American Institute of Physics, 2017, p. 062419, doi:10.1103/PhysRevE.95.062419.
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2017 | Journal Article | IST-REx-ID: 613   OA
Chait, Remy P., et al. “Shaping Bacterial Population Behavior through Computer Interfaced Control of Individual Cells.” Nature Communications, vol. 8, no. 1, 1535, Nature Publishing Group, 2017, doi:10.1038/s41467-017-01683-1.
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