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112 Publications

2018 | Journal Article | IST-REx-ID: 306   OA
De Martino, A., & De Martino, D. (2018). An introduction to the maximum entropy approach and its application to inference problems in biology. Heliyon, 4(4). https://doi.org/10.1016/j.heliyon.2018.e00596
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2018 | Research Data | IST-REx-ID: 5585
Igler, C., Lagator, M., Tkacik, G., Bollback, J. P., & Guet, C. C. (2018). Data for the paper Evolutionary potential of transcription factors for gene regulatory rewiring. IST Austria. https://doi.org/10.15479/AT:ISTA:108
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2018 | Journal Article | IST-REx-ID: 161   OA
De Martino, D., Mc, A. A., Bergmiller, T., Guet, C. C., & Tkacik, G. (2018). Statistical mechanics for metabolic networks during steady state growth. Nature Communications, 9(1), 2988. https://doi.org/10.1038/s41467-018-05417-9
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2018 | Journal Article | IST-REx-ID: 281   OA
Granados, A., Pietsch, J., Cepeda Humerez, S. A., Farquhar, I., Tkacik, G., & Swain, P. (2018). Distributed and dynamic intracellular organization of extracellular information. PNAS, 115(23), 6088–6093. https://doi.org/10.1073/pnas.1716659115
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2018 | Journal Article | IST-REx-ID: 457
Pleska, M., Lang, M., Refardt, D., Levin, B., & Guet, C. C. (2018). Phage-host population dynamics promotes prophage acquisition in bacteria with innate immunity. Nature Ecology and Evolution, 2(2), 359–366. https://doi.org/10.1038/s41559-017-0424-z
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2017 | Journal Article | IST-REx-ID: 1104   OA
Deny, S., Ferrari, U., Mace, E., Yger, P., Caplette, R., Picaud, S., … Marre, O. (2017). Multiplexed computations in retinal ganglion cells of a single type. Nature Communications, 8(1). https://doi.org/10.1038/s41467-017-02159-y
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2017 | Research Data | IST-REx-ID: 5562   OA
Marre, O., Tkacik, G., Amodei, D., Schneidman, E., Bialek, W., & Berry, M. (2017). Multi-electrode array recording from salamander retinal ganglion cells. IST Austria. https://doi.org/10.15479/AT:ISTA:61
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2017 | Journal Article | IST-REx-ID: 720   OA
Humplik, J., & Tkacik, G. (2017). Probabilistic models for neural populations that naturally capture global coupling and criticality. PLoS Computational Biology, 13(9). https://doi.org/10.1371/journal.pcbi.1005763
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2017 | Journal Article | IST-REx-ID: 725   OA
Harpaz, R., Tkacik, G., & Schneidman, E. (2017). Discrete modes of social information processing predict individual behavior of fish in a group. PNAS, 114(38), 10149–10154. https://doi.org/10.1073/pnas.1703817114
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2017 | Journal Article | IST-REx-ID: 548   OA
De Martino, D. (2017). Maximum entropy modeling of metabolic networks by constraining growth-rate moments predicts coexistence of phenotypes. Physical Review E, 96(6). https://doi.org/10.1103/PhysRevE.96.060401
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2017 | Journal Article | IST-REx-ID: 613   OA
Chait, R. P., Ruess, J., Bergmiller, T., Tkacik, G., & Guet, C. C. (2017). Shaping bacterial population behavior through computer interfaced control of individual cells. Nature Communications, 8(1). https://doi.org/10.1038/s41467-017-01683-1
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2017 | Journal Article | IST-REx-ID: 947   OA
De Martino, D., Capuani, F., & De Martino, A. (2017). Quantifying the entropic cost of cellular growth control. Physical Review E Statistical Nonlinear and Soft Matter Physics , 96(1). https://doi.org/10.1103/PhysRevE.96.010401
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2017 | Journal Article | IST-REx-ID: 959   OA
De Martino, D. (2017). Scales and multimodal flux distributions in stationary metabolic network models via thermodynamics. Physical Review E Statistical Nonlinear and Soft Matter Physics , 95(6), 062419. https://doi.org/10.1103/PhysRevE.95.062419
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2017 | Conference Paper | IST-REx-ID: 652
Der, R., & Martius, G. S. (2017). Dynamical self consistency leads to behavioral development and emergent social interactions in robots. Presented at the ICDL EpiRob: International Conference on Development and Learning and Epigenetic Robotics , Cergy-Pontoise, France: IEEE. https://doi.org/10.1109/DEVLRN.2016.7846789
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2017 | Journal Article | IST-REx-ID: 823   OA
Colabrese, S., De Martino, D., Leuzzi, L., & Marinari, E. (2017). Phase transitions in integer linear problems. Journal of Statistical Mechanics: Theory and Experiment, 2017(9). https://doi.org/10.1088/1742-5468/aa85c3
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2017 | Journal Article | IST-REx-ID: 943   OA
Zagórski, M. P., Tabata, Y., Brandenberg, N., Lutolf, M., Tkacik, G., Bollenbach, T., … Kicheva, A. (2017). Decoding of position in the developing neural tube from antiparallel morphogen gradients. Science, 356(6345), 1379–1383. https://doi.org/10.1126/science.aam5887
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2017 | Journal Article | IST-REx-ID: 993   OA
Levina (Martius), A., & Priesemann, V. (2017). Subsampling scaling. Nature Communications, 8. https://doi.org/10.1038/ncomms15140
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2017 | Journal Article | IST-REx-ID: 955   OA
Friedlander, T., Prizak, R., Barton, N. H., & Tkacik, G. (2017). Evolution of new regulatory functions on biophysically realistic fitness landscapes. Nature Communications, 8(1), 216. https://doi.org/10.1038/s41467-017-00238-8
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2017 | Journal Article | IST-REx-ID: 658   OA
Der, R., & Martius, G. S. (2017). Self organized behavior generation for musculoskeletal robots. Frontiers in Neurorobotics, 11(MAR). https://doi.org/10.3389/fnbot.2017.00008
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2017 | Journal Article | IST-REx-ID: 665
Bergmiller, T., Andersson, A. M., Tomasek, K., Balleza, E., Kiviet, D., Hauschild, R., … Guet, C. C. (2017). Biased partitioning of the multidrug efflux pump AcrAB TolC underlies long lived phenotypic heterogeneity. Science, 356(6335), 311–315. https://doi.org/10.1126/science.aaf4762
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