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116 Publications

2020 | Journal Article | IST-REx-ID: 7251
F. Lombardi et al., “Critical dynamics and coupling in bursts of cortical rhythms indicate non-homeostatic mechanism for sleep-stage transitions and dual role of VLPO neurons in both sleep and wake,” The Journal of neuroscience, vol. 40, no. 1, pp. 171–190, 2020.
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2020 | Research Data | IST-REx-ID: 7383   OA
R. Grah, Matlab scripts for the Paper: Gene Amplification as a Form of Population-Level Gene Expression regulation. IST Austria, 2020.
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2019 | Journal Article | IST-REx-ID: 6046   OA
K. Mitosch, G. Rieckh, and M. T. Bollenbach, “Temporal order and precision of complex stress responses in individual bacteria,” Molecular systems biology, vol. 15, no. 2, 2019.
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2019 | Journal Article | IST-REx-ID: 7103   OA
J. W. J. L. Wang, F. Lombardi, X. Zhang, C. Anaclet, and P. C. Ivanov, “Non-equilibrium critical dynamics of bursts in θ and δ rhythms as fundamental characteristic of sleep and wake micro-architecture,” PLOS Computational Biology, vol. 15, no. 11, 2019.
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2019 | Preprint | IST-REx-ID: 7083   OA
B. Kavcic, G. Tkačik, and T. Bollenbach, “Mechanistic origin of drug interactions between translation-inhibiting antibiotics,” bioRxiv. Cold Spring Harbor Laboratory.
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2019 | Journal Article | IST-REx-ID: 5817
B. Kavcic, A. Sakashita, H. Noguchi, and P. Ziherl, “Limiting shapes of confined lipid vesicles,” Soft Matter, vol. 15, no. 4, pp. 602–614, 2019.
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2019 | Thesis | IST-REx-ID: 6473
S. A. Cepeda Humerez, Estimating information flow in single cells. IST Austria, 2019.
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2019 | Journal Article | IST-REx-ID: 6049   OA
D. De Martino, “Feedback-induced self-oscillations in large interacting systems subjected to phase transitions,” Journal of Physics A: Mathematical and Theoretical, vol. 52, no. 4, 2019.
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2019 | Journal Article | IST-REx-ID: 6784   OA
J. Ruess, M. Pleska, C. C. Guet, and G. Tkačik, “Molecular noise of innate immunity shapes bacteria-phage ecologies,” PLoS Computational Biology, vol. 15, no. 7, 2019.
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2019 | Journal Article | IST-REx-ID: 5945
M. D. Petkova, G. Tkacik, W. Bialek, E. F. Wieschaus, and T. Gregor, “Optimal decoding of cellular identities in a genetic network,” Cell, vol. 176, no. 4, p. 844–855.e15, 2019.
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2019 | Journal Article | IST-REx-ID: 6090   OA
M. Carballo-Pacheco et al., “Receptor crosstalk improves concentration sensing of multiple ligands,” Physical Review E, vol. 99, no. 2, 2019.
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2019 | Thesis | IST-REx-ID: 6071
R. Prizak, Coevolution of transcription factors and their binding sites in sequence space. IST Austria, 2019.
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2018 | Journal Article | IST-REx-ID: 31   OA
U. Ferrari, S. Deny, M. J. Chalk, G. Tkacik, O. Marre, and T. Mora, “Separating intrinsic interactions from extrinsic correlations in a network of sensory neurons,” Physical Review E, vol. 98, no. 4, 2018.
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2018 | Journal Article | IST-REx-ID: 543   OA
M. J. Chalk, O. Marre, and G. Tkacik, “Toward a unified theory of efficient, predictive, and sparse coding,” PNAS, vol. 115, no. 1, pp. 186–191, 2018.
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2018 | Research Data | IST-REx-ID: 5587   OA
D. De Martino and G. Tkacik, Supporting materials “STATISTICAL MECHANICS FOR METABOLIC NETWORKS IN STEADY-STATE GROWTH.” IST Austria, 2018.
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2018 | Journal Article | IST-REx-ID: 67
C. Igler, M. Lagator, G. Tkacik, J. P. Bollback, and C. C. Guet, “Evolutionary potential of transcription factors for gene regulatory rewiring,” Nature Ecology and Evolution, vol. 2, no. 10, pp. 1633–1643, 2018.
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2018 | Journal Article | IST-REx-ID: 316   OA
K. Bodova, T. Priklopil, D. Field, N. H. Barton, and M. Pickup, “Evolutionary pathways for the generation of new self-incompatibility haplotypes in a non-self recognition system,” Genetics, vol. 209, no. 3, pp. 861–883, 2018.
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2018 | Journal Article | IST-REx-ID: 607   OA
K. Bodova, J. Haskovec, and P. Markowich, “Well posedness and maximum entropy approximation for the dynamics of quantitative traits,” Physica D: Nonlinear Phenomena, vol. 376–377, pp. 108–120, 2018.
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2018 | Journal Article | IST-REx-ID: 19   OA
A. Palmer, R. P. Chait, and R. Kishony, “Nonoptimal gene expression creates latent potential for antibiotic resistance,” Molecular Biology and Evolution, vol. 35, no. 11, pp. 2669–2684, 2018.
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2018 | Preprint | IST-REx-ID: 196   OA
M. Lang and M. Shkolnikov, “Harmonic dynamics of the Abelian sandpile,” ArXiv. ArXiv, 2018.
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