Please note that LibreCat no longer supports Internet Explorer versions 8 or 9 (or earlier).

We recommend upgrading to the latest Internet Explorer, Google Chrome, or Firefox.




159 Publications

2018 | Journal Article | IST-REx-ID: 31 | OA
Ferrari U, Deny S, Chalk MJ, Tkačik G, Marre O, Mora T. 2018. Separating intrinsic interactions from extrinsic correlations in a network of sensory neurons. Physical Review E. 98(4), 042410.
View | DOI | Download Preprint (ext.)
 
2018 | Journal Article | IST-REx-ID: 316 | OA
Bod’ová K, Priklopil T, Field D, Barton NH, Pickup M. 2018. Evolutionary pathways for the generation of new self-incompatibility haplotypes in a non-self recognition system. Genetics. 209(3), 861–883.
View | Files available | DOI | Download Preprint (ext.)
 
2018 | Research Data Reference | IST-REx-ID: 9813
Bod’ová K, Priklopil T, Field D, Barton NH, Pickup M. 2018. Supplemental material for Boďová et al., 2018, Genetics Society of America, 10.25386/genetics.6148304.v1.
View | Files available | DOI
 
2018 | Journal Article | IST-REx-ID: 406 | OA
Bod’Ová K, Mitchell G, Harpaz R, Schneidman E, Tkačik G. 2018. Probabilistic models of individual and collective animal behavior. PLoS One. 13(3).
View | Files available | DOI
 
2018 | Research Data Reference | IST-REx-ID: 9831
Bod’Ová K, Mitchell G, Harpaz R, Schneidman E, Tkačik G. 2018. Implementation of the inference method in Matlab, Public Library of Science, 10.1371/journal.pone.0193049.s001.
View | Files available | DOI
 
2018 | Journal Article | IST-REx-ID: 67 | OA
Igler C, Lagator M, Tkačik G, Bollback JP, Guet CC. 2018. Evolutionary potential of transcription factors for gene regulatory rewiring. Nature Ecology and Evolution. 2(10), 1633–1643.
View | Files available | DOI
 
2018 | Research Data | IST-REx-ID: 5585 | OA
Igler C, Lagator M, Tkačik G, Bollback JP, Guet CC. 2018. Data for the paper Evolutionary potential of transcription factors for gene regulatory rewiring, IST Austria, 10.15479/AT:ISTA:108.
View | Files available | DOI
 
2017 | Journal Article | IST-REx-ID: 823 | OA
Colabrese S, De Martino D, Leuzzi L, Marinari E. 2017. Phase transitions in integer linear problems. Journal of Statistical Mechanics: Theory and Experiment. 2017(9), 093404.
View | DOI | Download Submitted Version (ext.)
 
2017 | Journal Article | IST-REx-ID: 2016 | OA
Martin Del Campo Sanchez A, Cepeda Humerez SA, Uhler C. 2017. Exact goodness-of-fit testing for the Ising model. Scandinavian Journal of Statistics. 44(2), 285–306.
View | Files available | DOI | Download Preprint (ext.) | arXiv
 
2017 | Journal Article | IST-REx-ID: 720 | OA
Humplik J, Tkačik G. 2017. Probabilistic models for neural populations that naturally capture global coupling and criticality. PLoS Computational Biology. 13(9), e1005763.
View | Files available | DOI
 
2017 | Journal Article | IST-REx-ID: 725 | OA
Harpaz R, Tkačik G, Schneidman E. 2017. Discrete modes of social information processing predict individual behavior of fish in a group. PNAS. 114(38), 10149–10154.
View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
2017 | Journal Article | IST-REx-ID: 730
Savin C, Tkačik G. 2017. Maximum entropy models as a tool for building precise neural controls. Current Opinion in Neurobiology. 46, 120–126.
View | DOI
 
2017 | Journal Article | IST-REx-ID: 548 | OA
De Martino D. 2017. Maximum entropy modeling of metabolic networks by constraining growth-rate moments predicts coexistence of phenotypes. Physical Review E. 96(6), 060401.
View | DOI | Download Submitted Version (ext.)
 
2017 | Research Data | IST-REx-ID: 5560 | OA
Bergmiller T, Andersson AM, Tomasek K, Balleza E, Kiviet D, Hauschild R, Tkačik G, Guet CC. 2017. Biased partitioning of the multi-drug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity, IST Austria, doi:10.15479/AT:ISTA:53.
View | Files available | DOI
 
2017 | Research Data | IST-REx-ID: 5562 | OA
Marre O, Tkačik G, Amodei D, Schneidman E, Bialek W, Berry M. 2017. Multi-electrode array recording from salamander retinal ganglion cells, IST Austria, 10.15479/AT:ISTA:61.
View | Files available | DOI
 
2017 | Journal Article | IST-REx-ID: 613 | OA
Chait RP, Ruess J, Bergmiller T, Tkačik G, Guet CC. 2017. Shaping bacterial population behavior through computer interfaced control of individual cells. Nature Communications. 8(1), 1535.
View | Files available | DOI
 
2017 | Conference Paper | IST-REx-ID: 652
Der R, Martius GS. 2017. Dynamical self consistency leads to behavioral development and emergent social interactions in robots. ICDL EpiRob: International Conference on Development and Learning and Epigenetic Robotics , 7846789.
View | DOI
 
2017 | Journal Article | IST-REx-ID: 658 | OA
Der R, Martius GS. 2017. Self organized behavior generation for musculoskeletal robots. Frontiers in Neurorobotics. 11(MAR), 00008.
View | Files available | DOI
 
2017 | Journal Article | IST-REx-ID: 665
Bergmiller T, Andersson AM, Tomasek K, Balleza E, Kiviet D, Hauschild R, Tkačik G, Guet CC. 2017. Biased partitioning of the multidrug efflux pump AcrAB TolC underlies long lived phenotypic heterogeneity. Science. 356(6335), 311–315.
View | Files available | DOI
 
2017 | Journal Article | IST-REx-ID: 666 | OA
Mitosch K, Rieckh G, Bollenbach MT. 2017. Noisy response to antibiotic stress predicts subsequent single cell survival in an acidic environment. Cell Systems. 4(4), 393–403.
View | Files available | DOI
 
2017 | Journal Article | IST-REx-ID: 1007 | OA
Lang M, Sontag E. 2017. Zeros of nonlinear systems with input invariances. Automatica. 81C, 46–55.
View | Files available | DOI
 
2017 | Journal Article | IST-REx-ID: 1104 | OA
Deny S, Ferrari U, Mace E, Yger P, Caplette R, Picaud S, Tkačik G, Marre O. 2017. Multiplexed computations in retinal ganglion cells of a single type. Nature Communications. 8(1), 1964.
View | Files available | DOI
 
2017 | Journal Article | IST-REx-ID: 943 | OA
Zagórski MP, Tabata Y, Brandenberg N, Lutolf M, Tkačik G, Bollenbach T, Briscoe J, Kicheva A. 2017. Decoding of position in the developing neural tube from antiparallel morphogen gradients. Science. 356(6345), 1379–1383.
View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
2017 | Journal Article | IST-REx-ID: 947 | OA
De Martino D, Capuani F, De Martino A. 2017. Quantifying the entropic cost of cellular growth control. Physical Review E Statistical Nonlinear and Soft Matter Physics . 96(1), 010401.
View | DOI | Download Submitted Version (ext.)
 
2017 | Journal Article | IST-REx-ID: 955 | OA
Friedlander T, Prizak R, Barton NH, Tkačik G. 2017. Evolution of new regulatory functions on biophysically realistic fitness landscapes. Nature Communications. 8(1), 216.
View | Files available | DOI
 
2017 | Journal Article | IST-REx-ID: 959 | OA
De Martino D. 2017. Scales and multimodal flux distributions in stationary metabolic network models via thermodynamics. Physical Review E Statistical Nonlinear and Soft Matter Physics . 95(6), 062419.
View | DOI | Download Submitted Version (ext.)
 
2017 | Journal Article | IST-REx-ID: 993 | OA
Levina (Martius) A, Priesemann V. 2017. Subsampling scaling. Nature Communications. 8, 15140.
View | Files available | DOI
 
2017 | Research Data Reference | IST-REx-ID: 9709 | OA
Prentice J, Marre O, Ioffe M, Loback A, Tkačik G, Berry M. 2017. Data from: Error-robust modes of the retinal population code, Dryad, 10.5061/dryad.1f1rc.
View | Files available | DOI | Download Published Version (ext.)
 
2017 | Journal Article | IST-REx-ID: 680 | OA
Chalk MJ, Masset P, Gutkin B, Denève S. 2017. Sensory noise predicts divisive reshaping of receptive fields. PLoS Computational Biology. 13(6), e1005582.
View | Files available | DOI
 
2017 | Research Data Reference | IST-REx-ID: 9855
Chalk MJ, Masset P, Gutkin B, Denève S. 2017. Supplementary appendix, Public Library of Science, 10.1371/journal.pcbi.1005582.s001.
View | Files available | DOI
 
2017 | Journal Article | IST-REx-ID: 735
Barone V, Lang M, Krens G, Pradhan S, Shamipour S, Sako K, Sikora MK, Guet CC, Heisenberg C-PJ. 2017. An effective feedback loop between cell-cell contact duration and morphogen signaling determines cell fate. Developmental Cell. 43(2), 198–211.
View | Files available | DOI
 
2016 | Conference Paper | IST-REx-ID: 8094 | OA
Martius GS, Hostettler R, Knoll A, Der R. 2016. Self-organized control of an tendon driven arm by differential extrinsic plasticity. Proceedings of the Artificial Life Conference 2016. ALIFE 2016: 15th International Conference on the Synthesis and Simulation of Living Systems vol. 28, 142–143.
View | Files available | DOI
 
2016 | Journal Article | IST-REx-ID: 1290 | OA
Stone L, Baym M, Lieberman T, Chait RP, Clardy J, Kishony R. 2016. Compounds that select against the tetracycline-resistance efflux pump. Nature Chemical Biology. 12(11), 902–904.
View | DOI | Download Preprint (ext.)
 
2016 | Conference Paper | IST-REx-ID: 1320
Lang M, Sontag E. 2016. Scale-invariant systems realize nonlinear differential operators. ACC: American Control Conference vol. 2016–July, 7526722.
View | Files available | DOI
 
2016 | Journal Article | IST-REx-ID: 1332 | OA
Chait RP, Palmer A, Yelin I, Kishony R. 2016. Pervasive selection for and against antibiotic resistance in inhomogeneous multistress environments. Nature Communications. 7, 10333.
View | Files available | DOI
 
2016 | Journal Article | IST-REx-ID: 1342 | OA
Baym M, Lieberman T, Kelsic E, Chait RP, Gross R, Yelin I, Kishony R. 2016. Spatiotemporal microbial evolution on antibiotic landscapes. Science. 353(6304), 1147–1151.
View | DOI | Download Preprint (ext.)
 
2016 | Journal Article | IST-REx-ID: 1358 | OA
Friedlander T, Prizak R, Guet CC, Barton NH, Tkačik G. 2016. Intrinsic limits to gene regulation by global crosstalk. Nature Communications. 7, 12307.
View | Files available | DOI
 
2016 | Journal Article | IST-REx-ID: 1394 | OA
De Martino D, Capuani F, De Martino A. 2016. Growth against entropy in bacterial metabolism: the phenotypic trade-off behind empirical growth rate distributions in E. coli. Physical Biology. 13(3), 036005.
View | DOI | Download Preprint (ext.)
 
2016 | Journal Article | IST-REx-ID: 1420 | OA
Bod’ová K, Tkačik G, Barton NH. 2016. A general approximation for the dynamics of quantitative traits. Genetics. 202(4), 1523–1548.
View | DOI | Download Preprint (ext.) | arXiv
 
2016 | Journal Article | IST-REx-ID: 1485 | OA
De Martino D. 2016. Genome-scale estimate of the metabolic turnover of E. Coli from the energy balance analysis. Physical Biology. 13(1), 016003.
View | DOI | Download Preprint (ext.)
 
2016 | Conference Paper | IST-REx-ID: 1082 | OA
Chalk MJ, Marre O, Tkačik G. 2016. Relevant sparse codes with variational information bottleneck. NIPS: Neural Information Processing Systems, Advances in Neural Information Processing Systems, vol. 29, 1965–1973.
View | Files available | Download Preprint (ext.)
 
2016 | Conference Paper | IST-REx-ID: 1105
Savin C, Tkačik G. 2016. Estimating nonlinear neural response functions using GP priors and Kronecker methods. NIPS: Neural Information Processing Systems, Advances in Neural Information Processing Systems, vol. 29, 3610–3618.
View | Download None (ext.)
 
2016 | Thesis | IST-REx-ID: 1128 | OA
Rieckh G. 2016. Studying the complexities of transcriptional regulation. IST Austria.
View | Files available
 
2016 | Journal Article | IST-REx-ID: 1148
Schilling C, Bogomolov S, Henzinger TA, Podelski A, Ruess J. 2016. Adaptive moment closure for parameter inference of biochemical reaction networks. Biosystems. 149, 15–25.
View | Files available | DOI
 
2016 | Journal Article | IST-REx-ID: 1170
Lang M, Stelling J. 2016. Modular parameter identification of biomolecular networks. SIAM Journal on Scientific Computing. 38(6), B988–B1008.
View | Files available | DOI
 
2016 | Journal Article | IST-REx-ID: 1171
Tkačik G. 2016. Understanding regulatory networks requires more than computing a multitude of graph statistics: Comment on "Drivers of structural features in gene regulatory networks: From biophysical constraints to biological function" by O. C. Martin et al. Physics of Life Reviews. 17, 166–167.
View | DOI
 
2016 | Journal Article | IST-REx-ID: 1188 | OA
De Martino D, Masoero D. 2016. Asymptotic analysis of noisy fitness maximization, applied to metabolism & growth. Journal of Statistical Mechanics: Theory and Experiment. 2016(12), 123502.
View | DOI | Download Preprint (ext.)
 
2016 | Journal Article | IST-REx-ID: 1203 | OA
Hu F, Rishishwar L, Sivadas A, Mitchell G, King J, Murphy T, Gilsdorf J, Mayer L, Wang X. 2016. Comparative genomic analysis of Haemophilus haemolyticus and nontypeable Haemophilus influenzae and a new testing scheme for their discrimination. Journal of Clinical Microbiology. 54(12), 3010–3017.
View | DOI | Download Submitted Version (ext.)
 
2016 | Conference Paper | IST-REx-ID: 1214
Martius GS, Hostettler R, Knoll A, Der R. 2016. Compliant control for soft robots: Emergent behavior of a tendon driven anthropomorphic arm. IEEE RSJ International Conference on Intelligent Robots and Systems IROS vol. 2016–November, 7759138.
View | DOI
 
2016 | Conference Paper | IST-REx-ID: 1220 | OA
Mikić G, Stoll A, Bevirt J, Grah R, Moore M. 2016. Fuselage boundary layer ingestion propulsion applied to a thin haul commuter aircraft for optimal efficiency. AIAA: Aviation Technology, Integration, and Operations Conference, 1–19.
View | DOI | Download Preprint (ext.)
 

Search

Filter Publications