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114 Publications

2017 | Journal Article | IST-REx-ID: 1104   OA
S. Deny et al., “Multiplexed computations in retinal ganglion cells of a single type,” Nature Communications, vol. 8, no. 1, p. 1964, 2017.
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2017 | Journal Article | IST-REx-ID: 548   OA
D. De Martino, “Maximum entropy modeling of metabolic networks by constraining growth-rate moments predicts coexistence of phenotypes,” Physical Review E, vol. 96, no. 6, 2017.
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2017 | Journal Article | IST-REx-ID: 613   OA
R. P. Chait, J. Ruess, T. Bergmiller, G. Tkacik, and C. C. Guet, “Shaping bacterial population behavior through computer interfaced control of individual cells,” Nature Communications, vol. 8, no. 1, 2017.
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2017 | Journal Article | IST-REx-ID: 947   OA
D. De Martino, F. Capuani, and A. De Martino, “Quantifying the entropic cost of cellular growth control,” Physical Review E Statistical Nonlinear and Soft Matter Physics , vol. 96, no. 1, 2017.
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2017 | Journal Article | IST-REx-ID: 959   OA
D. De Martino, “Scales and multimodal flux distributions in stationary metabolic network models via thermodynamics,” Physical Review E Statistical Nonlinear and Soft Matter Physics , vol. 95, no. 6, p. 062419, 2017.
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2017 | Conference Paper | IST-REx-ID: 652
R. Der and G. S. Martius, “Dynamical self consistency leads to behavioral development and emergent social interactions in robots,” presented at the ICDL EpiRob: International Conference on Development and Learning and Epigenetic Robotics , Cergy-Pontoise, France, 2017.
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2017 | Journal Article | IST-REx-ID: 823   OA
S. Colabrese, D. De Martino, L. Leuzzi, and E. Marinari, “Phase transitions in integer linear problems,” Journal of Statistical Mechanics: Theory and Experiment, vol. 2017, no. 9, 2017.
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2017 | Journal Article | IST-REx-ID: 943   OA
M. P. Zagórski et al., “Decoding of position in the developing neural tube from antiparallel morphogen gradients,” Science, vol. 356, no. 6345, pp. 1379–1383, 2017.
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2017 | Journal Article | IST-REx-ID: 955   OA
T. Friedlander, R. Prizak, N. H. Barton, and G. Tkacik, “Evolution of new regulatory functions on biophysically realistic fitness landscapes,” Nature Communications, vol. 8, no. 1, p. 216, 2017.
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2017 | Journal Article | IST-REx-ID: 993   OA
A. Levina (Martius) and V. Priesemann, “Subsampling scaling,” Nature Communications, vol. 8, 2017.
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2017 | Journal Article | IST-REx-ID: 2016
A. Martin Del Campo Sanchez, S. A. Cepeda Humerez, and C. Uhler, “Exact goodness-of-fit testing for the Ising model,” Scandinavian Journal of Statistics, vol. 44, no. 2, pp. 285–306, 2017.
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2017 | Research Data | IST-REx-ID: 5560
T. Bergmiller et al., Biased partitioning of the multi-drug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity. IST Austria, 2017.
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2017 | Journal Article | IST-REx-ID: 665
T. Bergmiller et al., “Biased partitioning of the multidrug efflux pump AcrAB TolC underlies long lived phenotypic heterogeneity,” Science, vol. 356, no. 6335, pp. 311–315, 2017.
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2017 | Journal Article | IST-REx-ID: 730
C. Savin and G. Tkacik, “Maximum entropy models as a tool for building precise neural controls,” Current Opinion in Neurobiology, vol. 46, pp. 120–126, 2017.
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2017 | Journal Article | IST-REx-ID: 735
V. Barone et al., “An effective feedback loop between cell-cell contact duration and morphogen signaling determines cell fate,” Developmental Cell, vol. 43, no. 2, pp. 198–211, 2017.
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2017 | Journal Article | IST-REx-ID: 658   OA
R. Der and G. S. Martius, “Self organized behavior generation for musculoskeletal robots,” Frontiers in Neurorobotics, vol. 11, no. MAR, p. 00008, 2017.
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2017 | Journal Article | IST-REx-ID: 1007   OA
M. Lang and E. Sontag, “Zeros of nonlinear systems with input invariances,” Automatica, vol. 81C, pp. 46–55, 2017.
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2017 | Journal Article | IST-REx-ID: 680   OA
M. J. Chalk, P. Masset, B. Gutkin, and S. Denève, “Sensory noise predicts divisive reshaping of receptive fields,” PLoS Computational Biology, vol. 13, no. 6, 2017.
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2017 | Journal Article | IST-REx-ID: 666
K. Mitosch, G. Rieckh, and T. Bollenbach, “Noisy response to antibiotic stress predicts subsequent single cell survival in an acidic environment,” Cell Systems, vol. 4, no. 4, pp. 393–403, 2017.
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2016 | Thesis | IST-REx-ID: 1128
G. Rieckh, Studying the complexities of transcriptional regulation. IST Austria, 2016.
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2016 | Journal Article | IST-REx-ID: 1197   OA
J. Prentice, O. Marre, M. Ioffe, A. Loback, G. Tkacik, and M. Berry, “Error-robust modes of the retinal population code,” PLoS Computational Biology, vol. 12, no. 11, 2016.
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2016 | Journal Article | IST-REx-ID: 1248   OA
G. Tkacik and W. Bialek, “Information processing in living systems,” Annual Review of Condensed Matter Physics, vol. 7, pp. 89–117, 2016.
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2016 | Journal Article | IST-REx-ID: 1332   OA
R. P. Chait, A. Palmer, I. Yelin, and R. Kishony, “Pervasive selection for and against antibiotic resistance in inhomogeneous multistress environments,” Nature Communications, vol. 7, 2016.
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2016 | Conference Paper | IST-REx-ID: 1320
M. Lang and E. Sontag, “Scale-invariant systems realize nonlinear differential operators,” presented at the ACC: American Control Conference, Boston, MA, USA, 2016, vol. 2016–July.
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2016 | Journal Article | IST-REx-ID: 1394   OA
D. De Martino, F. Capuani, and A. De Martino, “Growth against entropy in bacterial metabolism: the phenotypic trade-off behind empirical growth rate distributions in E. coli,” Physical Biology, vol. 13, no. 3, 2016.
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2016 | Conference Paper | IST-REx-ID: 1105
C. Savin and G. Tkacik, “Estimating nonlinear neural response functions using GP priors and Kronecker methods,” presented at the NIPS: Neural Information Processing Systems, Barcelona; Spain, 2016, vol. 29, pp. 3610–3618.
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2016 | Conference Paper | IST-REx-ID: 1220   OA
G. Mikić, A. Stoll, J. Bevirt, R. Grah, and M. Moore, “Fuselage boundary layer ingestion propulsion applied to a thin haul commuter aircraft for optimal efficiency,” presented at the AIAA: Aviation Technology, Integration, and Operations Conference, Washington, D.C., USA, 2016, pp. 1–19.
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2016 | Journal Article | IST-REx-ID: 1270   OA
P. Hillenbrand, U. Gerland, and G. Tkacik, “Beyond the French flag model: Exploiting spatial and gene regulatory interactions for positional information,” PLoS One, vol. 11, no. 9, 2016.
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2016 | Journal Article | IST-REx-ID: 1244   OA
P. Recouvreux, T. R. Sokolowski, A. Grammoustianou, P. Tenwolde, and M. Dogterom, “Chimera proteins with affinity for membranes and microtubule tips polarize in the membrane of fission yeast cells,” PNAS, vol. 113, no. 7, pp. 1811–1816, 2016.
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2016 | Journal Article | IST-REx-ID: 1148
C. Schilling, S. Bogomolov, T. A. Henzinger, A. Podelski, and J. Ruess, “Adaptive moment closure for parameter inference of biochemical reaction networks,” Biosystems, vol. 149, pp. 15–25, 2016.
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2016 | Journal Article | IST-REx-ID: 1170
M. Lang and J. Stelling, “Modular parameter identification of biomolecular networks,” SIAM Journal on Scientific Computing, vol. 38, no. 6, pp. B988–B1008, 2016.
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2016 | Conference Paper | IST-REx-ID: 1214
G. S. Martius, R. Hostettler, A. Knoll, and R. Der, “Compliant control for soft robots: Emergent behavior of a tendon driven anthropomorphic arm,” presented at the IEEE RSJ International Conference on Intelligent Robots and Systems IROS , Daejeon, Korea, 2016, vol. 2016–November.
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2016 | Journal Article | IST-REx-ID: 1290   OA
L. Stone, M. Baym, T. Lieberman, R. P. Chait, J. Clardy, and R. Kishony, “Compounds that select against the tetracycline-resistance efflux pump,” Nature Chemical Biology, vol. 12, no. 11, pp. 902–904, 2016.
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2016 | Journal Article | IST-REx-ID: 1485   OA
D. De Martino, “Genome-scale estimate of the metabolic turnover of E. Coli from the energy balance analysis,” Physical Biology, vol. 13, no. 1, 2016.
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2016 | Journal Article | IST-REx-ID: 1358
T. Friedlander, R. Prizak, C. C. Guet, N. H. Barton, and G. Tkacik, “Intrinsic limits to gene regulation by global crosstalk,” Nature Communications, vol. 7, p. 12307, 2016.
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2016 | Conference Paper | IST-REx-ID: 948
T. Monk, C. Savin, and J. Lücke, “Neurons equipped with intrinsic plasticity learn stimulus intensity statistics,” presented at the NIPS: Neural Information Processing Systems, Barcelona, Spaine, 2016, vol. 29, pp. 4285–4293.
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2016 | Conference Paper | IST-REx-ID: 1082   OA
M. J. Chalk, O. Marre, and G. Tkacik, “Relevant sparse codes with variational information bottleneck,” presented at the NIPS: Neural Information Processing Systems, Barcelona, Spain, 2016, vol. 29, pp. 1965–1973.
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2016 | Journal Article | IST-REx-ID: 1171
G. Tkacik, “Understanding regulatory networks requires more than computing a multitude of graph statistics: Comment on "Drivers of structural features in gene regulatory networks: From biophysical constraints to biological function" by O. C. Martin et al.,” Physics of Life Reviews, vol. 17, pp. 166–167, 2016.
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2016 | Journal Article | IST-REx-ID: 1188   OA
D. De Martino and D. Masoero, “Asymptotic analysis of noisy fitness maximization, applied to metabolism & growth,” Journal of Statistical Mechanics: Theory and Experiment, vol. 2016, no. 12, p. 123502, 2016.
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2016 | Journal Article | IST-REx-ID: 1203   OA
F. Hu et al., “Comparative genomic analysis of Haemophilus haemolyticus and nontypeable Haemophilus influenzae and a new testing scheme for their discrimination,” Journal of Clinical Microbiology, vol. 54, no. 12, pp. 3010–3017, 2016.
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2016 | Journal Article | IST-REx-ID: 1260   OA
D. De Martino, “The dual of the space of interactions in neural network models,” International Journal of Modern Physics C, vol. 27, no. 6, 2016.
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2016 | Journal Article | IST-REx-ID: 1342   OA
M. Baym et al., “Spatiotemporal microbial evolution on antibiotic landscapes,” Science, vol. 353, no. 6304, pp. 1147–1151, 2016.
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2016 | Journal Article | IST-REx-ID: 1266   OA
M. J. Chalk, B. Gutkin, and S. Denève, “Neural oscillations as a signature of efficient coding in the presence of synaptic delays,” eLife, vol. 5, no. 2016JULY, 2016.
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2016 | Journal Article | IST-REx-ID: 1242   OA
T. R. Sokolowski, A. Walczak, W. Bialek, and G. Tkacik, “Extending the dynamic range of transcription factor action by translational regulation,” Physical Review E Statistical Nonlinear and Soft Matter Physics, vol. 93, no. 2, 2016.
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2016 | Journal Article | IST-REx-ID: 1420   OA
K. Bod’ová, G. Tkacik, and N. H. Barton, “A general approximation for the dynamics of quantitative traits,” Genetics, vol. 202, no. 4, pp. 1523–1548, 2016.
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2015 | Journal Article | IST-REx-ID: 1539   OA
J. Ruess, “Minimal moment equations for stochastic models of biochemical reaction networks with partially finite state space,” Journal of Chemical Physics, vol. 143, no. 24, 2015.
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2015 | Journal Article | IST-REx-ID: 1666   OA
M. Tugrul, T. Paixao, N. H. Barton, and G. Tkacik, “Dynamics of transcription factor binding site evolution,” PLoS Genetics, vol. 11, no. 11, 2015.
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2015 | Journal Article | IST-REx-ID: 1697   OA
O. Marre, V. Botella Soler, K. Simmons, T. Mora, G. Tkacik, and M. Berry, “High accuracy decoding of dynamical motion from a large retinal population,” PLoS Computational Biology, vol. 11, no. 7, 2015.
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2015 | Journal Article | IST-REx-ID: 1940   OA
T. R. Sokolowski and G. Tkacik, “Optimizing information flow in small genetic networks. IV. Spatial coupling,” Physical Review E Statistical Nonlinear and Soft Matter Physics, vol. 91, no. 6, 2015.
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2015 | Journal Article | IST-REx-ID: 1655   OA
G. S. Martius and E. Olbrich, “Quantifying emergent behavior of autonomous robots,” Entropy, vol. 17, no. 10, pp. 7266–7297, 2015.
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