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124 Publications

2016 | Journal Article | IST-REx-ID: 1203   OA
Hu, Fang, Lavanya Rishishwar, Ambily Sivadas, Gabriel Mitchell, Jordan King, Timothy Murphy, Janet Gilsdorf, Leonard Mayer, and Xin Wang. “Comparative Genomic Analysis of Haemophilus Haemolyticus and Nontypeable Haemophilus Influenzae and a New Testing Scheme for Their Discrimination.” Journal of Clinical Microbiology 54, no. 12 (2016): 3010–17. https://doi.org/10.1128/JCM.01511-16.
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2016 | Journal Article | IST-REx-ID: 1342   OA
Baym, Michael, Tami Lieberman, Eric Kelsic, Remy P Chait, Rotem Gross, Idan Yelin, and Roy Kishony. “Spatiotemporal Microbial Evolution on Antibiotic Landscapes.” Science 353, no. 6304 (2016): 1147–51. https://doi.org/10.1126/science.aag0822.
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2016 | Journal Article | IST-REx-ID: 1266   OA
Chalk, Matthew J, Boris Gutkin, and Sophie Denève. “Neural Oscillations as a Signature of Efficient Coding in the Presence of Synaptic Delays.” ELife 5, no. 2016JULY (2016). https://doi.org/10.7554/eLife.13824.
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2016 | Journal Article | IST-REx-ID: 1420   OA
Bod’ová, Katarína, Gasper Tkacik, and Nicholas H Barton. “A General Approximation for the Dynamics of Quantitative Traits.” Genetics 202, no. 4 (2016): 1523–48. https://doi.org/10.1534/genetics.115.184127.
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2016 | Journal Article | IST-REx-ID: 1242   OA
Sokolowski, Thomas R, Aleksandra Walczak, William Bialek, and Gasper Tkacik. “Extending the Dynamic Range of Transcription Factor Action by Translational Regulation.” Physical Review E Statistical Nonlinear and Soft Matter Physics 93, no. 2 (2016). https://doi.org/10.1103/PhysRevE.93.022404.
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2015 | Journal Article | IST-REx-ID: 1666   OA
Tugrul, Murat, Tiago Paixao, Nicholas H Barton, and Gasper Tkacik. “Dynamics of Transcription Factor Binding Site Evolution.” PLoS Genetics 11, no. 11 (2015). https://doi.org/10.1371/journal.pgen.1005639.
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2015 | Journal Article | IST-REx-ID: 1940   OA
Sokolowski, Thomas R, and Gasper Tkacik. “Optimizing Information Flow in Small Genetic Networks. IV. Spatial Coupling.” Physical Review E Statistical Nonlinear and Soft Matter Physics 91, no. 6 (2015). https://doi.org/10.1103/PhysRevE.91.062710.
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2015 | Journal Article | IST-REx-ID: 1539   OA
Ruess, Jakob. “Minimal Moment Equations for Stochastic Models of Biochemical Reaction Networks with Partially Finite State Space.” Journal of Chemical Physics 143, no. 24 (2015). https://doi.org/10.1063/1.4937937.
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2015 | Journal Article | IST-REx-ID: 1697   OA
Marre, Olivier, Vicente Botella Soler, Kristina Simmons, Thierry Mora, Gasper Tkacik, and Michael Berry. “High Accuracy Decoding of Dynamical Motion from a Large Retinal Population.” PLoS Computational Biology 11, no. 7 (2015). https://doi.org/10.1371/journal.pcbi.1004304.
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2015 | Journal Article | IST-REx-ID: 1655   OA
Martius, Georg S, and Eckehard Olbrich. “Quantifying Emergent Behavior of Autonomous Robots.” Entropy 17, no. 10 (2015): 7266–97. https://doi.org/10.3390/e17107266.
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2015 | Journal Article | IST-REx-ID: 1701   OA
Tkacik, Gasper, Thierry Mora, Olivier Marre, Dario Amodei, Stephanie Palmer, Michael Berry Ii, and William Bialek. “Thermodynamics and Signatures of Criticality in a Network of Neurons.” PNAS 112, no. 37 (2015): 11508–13. https://doi.org/10.1073/pnas.1514188112.
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2015 | Journal Article | IST-REx-ID: 1827   OA
Friedlander, Tamar, Avraham Mayo, Tsvi Tlusty, and Uri Alon. “Evolution of Bow-Tie Architectures in Biology.” PLoS Computational Biology 11, no. 3 (2015). https://doi.org/10.1371/journal.pcbi.1004055 .
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2015 | Journal Article | IST-REx-ID: 1570   OA
Der, Ralf, and Georg S Martius. “Novel Plasticity Rule Can Explain the Development of Sensorimotor Intelligence.” PNAS 112, no. 45 (2015): E6224–32. https://doi.org/10.1073/pnas.1508400112.
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2015 | Journal Article | IST-REx-ID: 1861
Ruess, Jakob, and John Lygeros. “Moment-Based Methods for Parameter Inference and Experiment Design for Stochastic Biochemical Reaction Networks.” ACM Transactions on Modeling and Computer Simulation 25, no. 2 (2015). https://doi.org/10.1145/2688906.
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2015 | Journal Article | IST-REx-ID: 1885   OA
Tkacik, Gasper, Julien Dubuis, Mariela Petkova, and Thomas Gregor. “Positional Information, Positional Error, and Readout Precision in Morphogenesis: A Mathematical Framework.” Genetics 199, no. 1 (2015): 39–59. https://doi.org/10.1534/genetics.114.171850.
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2015 | Journal Article | IST-REx-ID: 1564   OA
Gilson, Matthieu, Cristina Savin, and Friedemann Zenke. “Editorial: Emergent Neural Computation from the Interaction of Different Forms of Plasticity.” Frontiers in Computational Neuroscience 9, no. 11 (2015). https://doi.org/10.3389/fncom.2015.00145.
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2015 | Journal Article | IST-REx-ID: 1538   OA
Ruess, Jakob, Francesca Parise, Andreas Milias Argeitis, Mustafa Khammash, and John Lygeros. “Iterative Experiment Design Guides the Characterization of a Light-Inducible Gene Expression Circuit.” PNAS 112, no. 26 (2015): 8148–53. https://doi.org/10.1073/pnas.1423947112.
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2015 | Journal Article | IST-REx-ID: 1576
Cepeda Humerez, Sarah A, Georg Rieckh, and Gasper Tkacik. “Stochastic Proofreading Mechanism Alleviates Crosstalk in Transcriptional Regulation.” Physical Review Letters 115, no. 24 (2015). https://doi.org/10.1103/PhysRevLett.115.248101.
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2015 | Conference Paper | IST-REx-ID: 1658
Bogomolov, Sergiy, Thomas A Henzinger, Andreas Podelski, Jakob Ruess, and Christian Schilling. “Adaptive Moment Closure for Parameter Inference of Biochemical Reaction Networks.” Lecture Notes in Computer Science. Springer, 2015. https://doi.org/10.1007/978-3-319-23401-4_8.
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2014 | Journal Article | IST-REx-ID: 3263   OA
Tkacik, Gasper, Anandamohan Ghosh, Elad Schneidman, and Ronen Segev. “Adaptation to Changes in Higher-Order Stimulus Statistics in the Salamander Retina.” PLoS One 9, no. 1 (2014). https://doi.org/10.1371/journal.pone.0085841.
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