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124 Publications

2016 | Journal Article | IST-REx-ID: 1203   OA
Hu, F., Rishishwar, L., Sivadas, A., Mitchell, G., King, J., Murphy, T., … Wang, X. (2016). Comparative genomic analysis of Haemophilus haemolyticus and nontypeable Haemophilus influenzae and a new testing scheme for their discrimination. Journal of Clinical Microbiology, 54(12), 3010–3017. https://doi.org/10.1128/JCM.01511-16
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2016 | Journal Article | IST-REx-ID: 1342   OA
Baym, M., Lieberman, T., Kelsic, E., Chait, R. P., Gross, R., Yelin, I., & Kishony, R. (2016). Spatiotemporal microbial evolution on antibiotic landscapes. Science, 353(6304), 1147–1151. https://doi.org/10.1126/science.aag0822
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2016 | Journal Article | IST-REx-ID: 1266   OA
Chalk, M. J., Gutkin, B., & Denève, S. (2016). Neural oscillations as a signature of efficient coding in the presence of synaptic delays. ELife, 5(2016JULY). https://doi.org/10.7554/eLife.13824
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2016 | Journal Article | IST-REx-ID: 1420   OA
Bod’ová, K., Tkacik, G., & Barton, N. H. (2016). A general approximation for the dynamics of quantitative traits. Genetics, 202(4), 1523–1548. https://doi.org/10.1534/genetics.115.184127
View | DOI | Download (ext.) | arXiv
 
2016 | Journal Article | IST-REx-ID: 1242   OA
Sokolowski, T. R., Walczak, A., Bialek, W., & Tkacik, G. (2016). Extending the dynamic range of transcription factor action by translational regulation. Physical Review E Statistical Nonlinear and Soft Matter Physics, 93(2). https://doi.org/10.1103/PhysRevE.93.022404
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2015 | Journal Article | IST-REx-ID: 1666   OA
Tugrul, M., Paixao, T., Barton, N. H., & Tkacik, G. (2015). Dynamics of transcription factor binding site evolution. PLoS Genetics, 11(11). https://doi.org/10.1371/journal.pgen.1005639
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2015 | Journal Article | IST-REx-ID: 1940   OA
Sokolowski, T. R., & Tkacik, G. (2015). Optimizing information flow in small genetic networks. IV. Spatial coupling. Physical Review E Statistical Nonlinear and Soft Matter Physics, 91(6). https://doi.org/10.1103/PhysRevE.91.062710
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2015 | Journal Article | IST-REx-ID: 1539   OA
Ruess, J. (2015). Minimal moment equations for stochastic models of biochemical reaction networks with partially finite state space. Journal of Chemical Physics, 143(24). https://doi.org/10.1063/1.4937937
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2015 | Journal Article | IST-REx-ID: 1697   OA
Marre, O., Botella Soler, V., Simmons, K., Mora, T., Tkacik, G., & Berry, M. (2015). High accuracy decoding of dynamical motion from a large retinal population. PLoS Computational Biology, 11(7). https://doi.org/10.1371/journal.pcbi.1004304
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2015 | Journal Article | IST-REx-ID: 1655   OA
Martius, G. S., & Olbrich, E. (2015). Quantifying emergent behavior of autonomous robots. Entropy, 17(10), 7266–7297. https://doi.org/10.3390/e17107266
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2015 | Journal Article | IST-REx-ID: 1701   OA
Tkacik, G., Mora, T., Marre, O., Amodei, D., Palmer, S., Berry Ii, M., & Bialek, W. (2015). Thermodynamics and signatures of criticality in a network of neurons. PNAS, 112(37), 11508–11513. https://doi.org/10.1073/pnas.1514188112
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2015 | Journal Article | IST-REx-ID: 1827   OA
Friedlander, T., Mayo, A., Tlusty, T., & Alon, U. (2015). Evolution of bow-tie architectures in biology. PLoS Computational Biology, 11(3). https://doi.org/10.1371/journal.pcbi.1004055
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2015 | Journal Article | IST-REx-ID: 1570   OA
Der, R., & Martius, G. S. (2015). Novel plasticity rule can explain the development of sensorimotor intelligence. PNAS, 112(45), E6224–E6232. https://doi.org/10.1073/pnas.1508400112
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2015 | Journal Article | IST-REx-ID: 1861
Ruess, J., & Lygeros, J. (2015). Moment-based methods for parameter inference and experiment design for stochastic biochemical reaction networks. ACM Transactions on Modeling and Computer Simulation, 25(2). https://doi.org/10.1145/2688906
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2015 | Journal Article | IST-REx-ID: 1885   OA
Tkacik, G., Dubuis, J., Petkova, M., & Gregor, T. (2015). Positional information, positional error, and readout precision in morphogenesis: A mathematical framework. Genetics, 199(1), 39–59. https://doi.org/10.1534/genetics.114.171850
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2015 | Journal Article | IST-REx-ID: 1564   OA
Gilson, M., Savin, C., & Zenke, F. (2015). Editorial: Emergent neural computation from the interaction of different forms of plasticity. Frontiers in Computational Neuroscience, 9(11). https://doi.org/10.3389/fncom.2015.00145
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2015 | Journal Article | IST-REx-ID: 1538   OA
Ruess, J., Parise, F., Milias Argeitis, A., Khammash, M., & Lygeros, J. (2015). Iterative experiment design guides the characterization of a light-inducible gene expression circuit. PNAS, 112(26), 8148–8153. https://doi.org/10.1073/pnas.1423947112
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2015 | Journal Article | IST-REx-ID: 1576
Cepeda Humerez, S. A., Rieckh, G., & Tkacik, G. (2015). Stochastic proofreading mechanism alleviates crosstalk in transcriptional regulation. Physical Review Letters, 115(24). https://doi.org/10.1103/PhysRevLett.115.248101
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2015 | Conference Paper | IST-REx-ID: 1658
Bogomolov, S., Henzinger, T. A., Podelski, A., Ruess, J., & Schilling, C. (2015). Adaptive moment closure for parameter inference of biochemical reaction networks. Presented at the CMSB: Computational Methods in Systems Biology, Nantes, France: Springer. https://doi.org/10.1007/978-3-319-23401-4_8
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2014 | Journal Article | IST-REx-ID: 3263   OA
Tkacik, G., Ghosh, A., Schneidman, E., & Segev, R. (2014). Adaptation to changes in higher-order stimulus statistics in the salamander retina. PLoS One, 9(1). https://doi.org/10.1371/journal.pone.0085841
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