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128 Publications

2020 | Preprint | IST-REx-ID: 7673   OA
B. Kavcic, G. Tkačik, and T. Bollenbach, “A minimal biophysical model of combined antibiotic action,” bioRxiv. Cold Spring Harbor Laboratory, 2020.
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2020 | Journal Article | IST-REx-ID: 7251
F. Lombardi et al., “Critical dynamics and coupling in bursts of cortical rhythms indicate non-homeostatic mechanism for sleep-stage transitions and dual role of VLPO neurons in both sleep and wake,” The Journal of neuroscience, vol. 40, no. 1, pp. 171–190, 2020.
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2020 | Research Data | IST-REx-ID: 7383
R. Grah, Matlab scripts for the Paper: Gene Amplification as a Form of Population-Level Gene Expression regulation. IST Austria, 2020.
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2020 | Journal Article | IST-REx-ID: 7656   OA
M. J. Berry and G. Tkačik, “Clustering of neural activity: A design principle for population codes,” Frontiers in Computational Neuroscience, vol. 14, p. 20, 2020.
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2020 | Preprint | IST-REx-ID: 7675   OA
R. Grah, B. Zoller, and G. Tkačik, “Normative models of enhancer function,” bioRxiv. Cold Spring Harbor Laboratory, 2020.
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2019 | Journal Article | IST-REx-ID: 6046   OA
K. Mitosch, G. Rieckh, and M. T. Bollenbach, “Temporal order and precision of complex stress responses in individual bacteria,” Molecular systems biology, vol. 15, no. 2, 2019.
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2019 | Journal Article | IST-REx-ID: 7103   OA
J. W. J. L. Wang, F. Lombardi, X. Zhang, C. Anaclet, and P. C. Ivanov, “Non-equilibrium critical dynamics of bursts in θ and δ rhythms as fundamental characteristic of sleep and wake micro-architecture,” PLOS Computational Biology, vol. 15, no. 11, 2019.
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2019 | Preprint | IST-REx-ID: 7083   OA
B. Kavcic, G. Tkačik, and T. Bollenbach, “Mechanistic origin of drug interactions between translation-inhibiting antibiotics,” bioRxiv. Cold Spring Harbor Laboratory.
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2019 | Preprint | IST-REx-ID: 7552   OA
W. Bialek, T. Gregor, and G. Tkačik, “Action at a distance in transcriptional regulation,” arXiv:1912.08579. ArXiv.
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2019 | Journal Article | IST-REx-ID: 5817
B. Kavcic, A. Sakashita, H. Noguchi, and P. Ziherl, “Limiting shapes of confined lipid vesicles,” Soft Matter, vol. 15, no. 4, pp. 602–614, 2019.
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2019 | Thesis | IST-REx-ID: 6473
S. A. Cepeda Humerez, Estimating information flow in single cells. IST Austria, 2019.
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2019 | Journal Article | IST-REx-ID: 6049   OA
D. De Martino, “Feedback-induced self-oscillations in large interacting systems subjected to phase transitions,” Journal of Physics A: Mathematical and Theoretical, vol. 52, no. 4, 2019.
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2019 | Journal Article | IST-REx-ID: 6784   OA
J. Ruess, M. Pleska, C. C. Guet, and G. Tkačik, “Molecular noise of innate immunity shapes bacteria-phage ecologies,” PLoS Computational Biology, vol. 15, no. 7, 2019.
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2019 | Journal Article | IST-REx-ID: 5945
M. D. Petkova, G. Tkacik, W. Bialek, E. F. Wieschaus, and T. Gregor, “Optimal decoding of cellular identities in a genetic network,” Cell, vol. 176, no. 4, p. 844–855.e15, 2019.
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2019 | Journal Article | IST-REx-ID: 7422   OA
T. R. Sokolowski et al., “eGFRD in all dimensions,” The Journal of Chemical Physics, vol. 150, no. 5, p. 054108, 2019.
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2019 | Journal Article | IST-REx-ID: 6900   OA
S. A. Cepeda Humerez, J. Ruess, and G. Tkačik, “Estimating information in time-varying signals,” PLoS computational biology, vol. 15, no. 9, p. e1007290, 2019.
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2019 | Journal Article | IST-REx-ID: 6090   OA
M. Carballo-Pacheco et al., “Receptor crosstalk improves concentration sensing of multiple ligands,” Physical Review E, vol. 99, no. 2, 2019.
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2019 | Thesis | IST-REx-ID: 6071
R. Prizak, Coevolution of transcription factors and their binding sites in sequence space. IST Austria, 2019.
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2019 | Conference Paper | IST-REx-ID: 7606   OA
M. Hledik, T. R. Sokolowski, and G. Tkačik, “A tight upper bound on mutual information,” in IEEE Information Theory Workshop, ITW 2019, Visby, Sweden, 2019, p. 8989292.
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2018 | Journal Article | IST-REx-ID: 543   OA
M. J. Chalk, O. Marre, and G. Tkacik, “Toward a unified theory of efficient, predictive, and sparse coding,” PNAS, vol. 115, no. 1, pp. 186–191, 2018.
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