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134 Publications

2020 | Journal Article | IST-REx-ID: 8105 | OA
Lombardi, F., Wang, J. W. J. L., Zhang, X., & Ivanov, P. C. (2020). Power-law correlations and coupling of active and quiet states underlie a class of complex systems with self-organization at criticality. EPJ Web of Conferences, 230. https://doi.org/10.1051/epjconf/202023000005
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2020 | Journal Article | IST-REx-ID: 8250 | OA
Kavcic, B., Tkačik, G., & Bollenbach, M. T. (2020). Mechanisms of drug interactions between translation-inhibiting antibiotics. Nature Communications, 11. https://doi.org/10.1038/s41467-020-17734-z
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2020 | Journal Article | IST-REx-ID: 8698 | OA
Maoz, O., Tkačik, G., Esteki, M. S., Kiani, R., & Schneidman, E. (2020). Learning probabilistic neural representations with randomly connected circuits. Proceedings of the National Academy of Sciences of the United States of America, 117(40), 25066–25073. https://doi.org/10.1073/pnas.1912804117
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2020 | Preprint | IST-REx-ID: 7463 | OA
Lombardi, F., Shriki, O., Herrmann, H. J., & de Arcangelis, L. (2020). Long-range temporal correlations in the broadband resting state activity of the human brain revealed by neuronal avalanches. BioRxiv. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2020.02.03.930966
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2020 | Preprint | IST-REx-ID: 7553 | OA
Mlynarski, W. F., Hledik, M., Sokolowski, T. R., & Tkačik, G. (n.d.). Statistical analysis and optimality of biological systems. BioRxiv. Cold Spring Harbor Laboratory. https://doi.org/10.1101/848374
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2020 | Thesis | IST-REx-ID: 8657
Kavcic, B. (2020). Perturbations of protein synthesis: from antibiotics to genetics and physiology. IST Austria. https://doi.org/10.15479/AT:ISTA:8657
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2020 | Preprint | IST-REx-ID: 7673 | OA
Kavcic, B., Tkačik, G., & Bollenbach, M. T. (2020). A minimal biophysical model of combined antibiotic action. BioRxiv. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2020.04.18.047886
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2020 | Preprint | IST-REx-ID: 7675 | OA
Grah, R., Zoller, B., & Tkačik, G. (2020). Normative models of enhancer function. BioRxiv. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2020.04.08.029405
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2020 | Journal Article | IST-REx-ID: 7652 | OA
Tomanek, I., Grah, R., Lagator, M., Andersson, A. M. C., Bollback, J. P., Tkačik, G., & Guet, C. C. (2020). Gene amplification as a form of population-level gene expression regulation. Nature Ecology & Evolution, 4(4), 612–625. https://doi.org/10.1038/s41559-020-1132-7
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2020 | Thesis | IST-REx-ID: 8155 | OA
Grah, R. (2020). Gene regulation across scales – how biophysical constraints shape evolution. IST Austria. https://doi.org/10.15479/AT:ISTA:8155
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2020 | Research Data | IST-REx-ID: 7383 | OA
Grah, R. (2020). Matlab scripts for the Paper: Gene Amplification as a Form of Population-Level Gene Expression regulation. IST Austria. https://doi.org/10.15479/AT:ISTA:7383
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2019 | Journal Article | IST-REx-ID: 7422 | OA
Sokolowski, T. R., Paijmans, J., Bossen, L., Miedema, T., Wehrens, M., Becker, N. B., … ten Wolde, P. R. (2019). eGFRD in all dimensions. The Journal of Chemical Physics, 150(5), 054108. https://doi.org/10.1063/1.5064867
View | DOI | Download Preprint (ext.) | arXiv
 
2019 | Preprint | IST-REx-ID: 7552 | OA
Bialek, W., Gregor, T., & Tkačik, G. (n.d.). Action at a distance in transcriptional regulation. ArXiv:1912.08579. ArXiv.
View | Download Preprint (ext.) | arXiv
 
2019 | Conference Paper | IST-REx-ID: 7606 | OA
Hledik, M., Sokolowski, T. R., & Tkačik, G. (2019). A tight upper bound on mutual information. In IEEE Information Theory Workshop, ITW 2019 (p. 8989292). Visby, Sweden: IEEE. https://doi.org/10.1109/ITW44776.2019.8989292
View | DOI | Download Preprint (ext.) | arXiv
 
2019 | Journal Article | IST-REx-ID: 6046 | OA
Mitosch, K., Rieckh, G., & Bollenbach, M. T. (2019). Temporal order and precision of complex stress responses in individual bacteria. Molecular Systems Biology, 15(2). https://doi.org/10.15252/msb.20188470
View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
2019 | Journal Article | IST-REx-ID: 6049 | OA
De Martino, D. (2019). Feedback-induced self-oscillations in large interacting systems subjected to phase transitions. Journal of Physics A: Mathematical and Theoretical, 52(4). https://doi.org/10.1088/1751-8121/aaf2dd
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2019 | Thesis | IST-REx-ID: 6071 | OA
Prizak, R. (2019). Coevolution of transcription factors and their binding sites in sequence space. IST Austria. https://doi.org/10.15479/at:ista:th6071
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2019 | Journal Article | IST-REx-ID: 6090 | OA
Carballo-Pacheco, M., Desponds, J., Gavrilchenko, T., Mayer, A., Prizak, R., Reddy, G., … Mora, T. (2019). Receptor crosstalk improves concentration sensing of multiple ligands. Physical Review E, 99(2). https://doi.org/10.1103/PhysRevE.99.022423
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2019 | Thesis | IST-REx-ID: 6473 | OA
Cepeda Humerez, S. A. (2019). Estimating information flow in single cells. IST Austria. https://doi.org/10.15479/AT:ISTA:6473
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2019 | Journal Article | IST-REx-ID: 6784 | OA
Ruess, J., Pleska, M., Guet, C. C., & Tkačik, G. (2019). Molecular noise of innate immunity shapes bacteria-phage ecologies. PLoS Computational Biology, 15(7). https://doi.org/10.1371/journal.pcbi.1007168
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