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135 Publications

2020 | Preprint | IST-REx-ID: 7675 | OA
Normative models of enhancer function
R. Grah, B. Zoller, G. Tkačik, BioRxiv (2020).
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2020 | Journal Article | IST-REx-ID: 8084 | OA
Critical dynamics and coupling in bursts of cortical rhythms indicate non-homeostatic mechanism for sleep-stage transitions and dual role of VLPO neurons in both sleep and wake
F. Lombardi, M. Gómez-Extremera, P. Bernaola-Galván, R. Vetrivelan, C.B. Saper, T.E. Scammell, P.C. Ivanov, Journal of Neuroscience 40 (2020) 171–190.
View | Files available | DOI | PubMed | Europe PMC
 
2020 | Research Data | IST-REx-ID: 8097 | OA
Analysis scripts and research data for the paper "Mechanisms of drug interactions between translation-inhibiting antibiotics"
B. Kavcic, Analysis Scripts and Research Data for the Paper “Mechanisms of Drug Interactions between Translation-Inhibiting Antibiotics,” IST Austria, 2020.
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2020 | Journal Article | IST-REx-ID: 8105 | OA View | Files available | DOI
 
2020 | Thesis | IST-REx-ID: 8155 | OA
Gene regulation across scales – how biophysical constraints shape evolution
R. Grah, Gene Regulation across Scales – How Biophysical Constraints Shape Evolution, IST Austria, 2020.
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2020 | Research Data | IST-REx-ID: 7383 | OA
Matlab scripts for the Paper: Gene Amplification as a Form of Population-Level Gene Expression regulation
R. Grah, Matlab Scripts for the Paper: Gene Amplification as a Form of Population-Level Gene Expression Regulation, IST Austria, 2020.
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2020 | Thesis | IST-REx-ID: 8657
Perturbations of protein synthesis: from antibiotics to genetics and physiology
B. Kavcic, Perturbations of Protein Synthesis: From Antibiotics to Genetics and Physiology, IST Austria, 2020.
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2020 | Journal Article | IST-REx-ID: 8250 | OA
Mechanisms of drug interactions between translation-inhibiting antibiotics
B. Kavcic, G. Tkačik, M.T. Bollenbach, Nature Communications 11 (2020).
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2020 | Preprint | IST-REx-ID: 7673 | OA
A minimal biophysical model of combined antibiotic action
B. Kavcic, G. Tkačik, T. Bollenbach, BioRxiv (2020).
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2020 | Journal Article | IST-REx-ID: 7652 | OA
Gene amplification as a form of population-level gene expression regulation
I. Tomanek, R. Grah, M. Lagator, A.M.C. Andersson, J.P. Bollback, G. Tkačik, C.C. Guet, Nature Ecology & Evolution 4 (2020) 612–625.
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2020 | Journal Article | IST-REx-ID: 8698 | OA
Learning probabilistic neural representations with randomly connected circuits
O. Maoz, G. Tkačik, M.S. Esteki, R. Kiani, E. Schneidman, Proceedings of the National Academy of Sciences of the United States of America 117 (2020) 25066–25073.
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2019 | Journal Article | IST-REx-ID: 7422 | OA
eGFRD in all dimensions
T.R. Sokolowski, J. Paijmans, L. Bossen, T. Miedema, M. Wehrens, N.B. Becker, K. Kaizu, K. Takahashi, M. Dogterom, P.R. ten Wolde, The Journal of Chemical Physics 150 (2019) 054108.
View | DOI | Download Preprint (ext.) | arXiv
 
2019 | Preprint | IST-REx-ID: 7552 | OA
Action at a distance in transcriptional regulation
W. Bialek, T. Gregor, G. Tkačik, ArXiv:1912.08579 (n.d.).
View | Download Preprint (ext.) | arXiv
 
2019 | Conference Paper | IST-REx-ID: 7606 | OA
A tight upper bound on mutual information
M. Hledik, T.R. Sokolowski, G. Tkačik, in:, IEEE Information Theory Workshop, ITW 2019, IEEE, 2019, p. 8989292.
View | DOI | Download Preprint (ext.) | arXiv
 
2019 | Journal Article | IST-REx-ID: 6046 | OA
Temporal order and precision of complex stress responses in individual bacteria
K. Mitosch, G. Rieckh, M.T. Bollenbach, Molecular Systems Biology 15 (2019).
View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
2019 | Journal Article | IST-REx-ID: 6049 | OA
Feedback-induced self-oscillations in large interacting systems subjected to phase transitions
D. De Martino, Journal of Physics A: Mathematical and Theoretical 52 (2019).
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2019 | Thesis | IST-REx-ID: 6071 | OA
Coevolution of transcription factors and their binding sites in sequence space
R. Prizak, Coevolution of Transcription Factors and Their Binding Sites in Sequence Space, IST Austria, 2019.
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2019 | Journal Article | IST-REx-ID: 6090 | OA
Receptor crosstalk improves concentration sensing of multiple ligands
M. Carballo-Pacheco, J. Desponds, T. Gavrilchenko, A. Mayer, R. Prizak, G. Reddy, I. Nemenman, T. Mora, Physical Review E 99 (2019).
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2019 | Thesis | IST-REx-ID: 6473 | OA
Estimating information flow in single cells
S.A. Cepeda Humerez, Estimating Information Flow in Single Cells, IST Austria, 2019.
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2019 | Journal Article | IST-REx-ID: 6784 | OA
Molecular noise of innate immunity shapes bacteria-phage ecologies
J. Ruess, M. Pleska, C.C. Guet, G. Tkačik, PLoS Computational Biology 15 (2019).
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