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114 Publications

2018 | Journal Article | IST-REx-ID: 607   OA
K. Bodova, J. Haskovec, and P. Markowich, “Well posedness and maximum entropy approximation for the dynamics of quantitative traits,” Physica D: Nonlinear Phenomena, vol. 376–377, pp. 108–120, 2018.
View | DOI | Download (ext.) | arXiv
 
2018 | Journal Article | IST-REx-ID: 19   OA
A. Palmer, R. P. Chait, and R. Kishony, “Nonoptimal gene expression creates latent potential for antibiotic resistance,” Molecular Biology and Evolution, vol. 35, no. 11, pp. 2669–2684, 2018.
View | DOI | Download (ext.) | PubMed | Europe PMC
 
2018 | Preprint | IST-REx-ID: 196   OA
M. Lang and M. Shkolnikov, “Harmonic dynamics of the Abelian sandpile,” ArXiv. ArXiv, 2018.
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2018 | Journal Article | IST-REx-ID: 305
P. Misun, A. Birchler, M. Lang, A. Hierlemann, and O. Frey, “Fabrication and operation of microfluidic hanging drop networks,” Methods in Molecular Biology, vol. 1771, pp. 183–202, 2018.
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2018 | Journal Article | IST-REx-ID: 406   OA
K. Bod’Ová, G. Mitchell, R. Harpaz, E. Schneidman, and G. Tkacik, “Probabilistic models of individual and collective animal behavior,” PLoS One, vol. 13, no. 3, 2018.
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2018 | Journal Article | IST-REx-ID: 292
V. Botella Soler, S. Deny, G. S. Martius, O. Marre, and G. Tkacik, “Nonlinear decoding of a complex movie from the mammalian retina,” PLoS Computational Biology, vol. 14, no. 5, p. e1006057, 2018.
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2018 | Research Data | IST-REx-ID: 5584   OA
S. Deny, O. Marre, V. Botella-Soler, G. S. Martius, and G. Tkacik, Nonlinear decoding of a complex movie from the mammalian retina. IST Austria, 2018.
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2018 | Journal Article | IST-REx-ID: 306   OA
A. De Martino and D. De Martino, “An introduction to the maximum entropy approach and its application to inference problems in biology,” Heliyon, vol. 4, no. 4, 2018.
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2018 | Journal Article | IST-REx-ID: 457
M. Pleska, M. Lang, D. Refardt, B. Levin, and C. C. Guet, “Phage-host population dynamics promotes prophage acquisition in bacteria with innate immunity,” Nature Ecology and Evolution, vol. 2, no. 2, pp. 359–366, 2018.
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2018 | Journal Article | IST-REx-ID: 161
D. De Martino, A. A. Mc, T. Bergmiller, C. C. Guet, and G. Tkacik, “Statistical mechanics for metabolic networks during steady state growth,” Nature Communications, vol. 9, no. 1, p. 2988, 2018.
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2018 | Journal Article | IST-REx-ID: 281
A. Granados, J. Pietsch, S. A. Cepeda Humerez, I. Farquhar, G. Tkacik, and P. Swain, “Distributed and dynamic intracellular organization of extracellular information,” PNAS, vol. 115, no. 23, pp. 6088–6093, 2018.
View | Files available | DOI | Download (ext.) | PubMed | Europe PMC
 
2018 | Research Data | IST-REx-ID: 5585
C. Igler, M. Lagator, G. Tkacik, J. P. Bollback, and C. C. Guet, Data for the paper Evolutionary potential of transcription factors for gene regulatory rewiring. IST Austria, 2018.
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2017 | Research Data | IST-REx-ID: 5562   OA
O. Marre, G. Tkacik, D. Amodei, E. Schneidman, W. Bialek, and M. Berry, Multi-electrode array recording from salamander retinal ganglion cells. IST Austria, 2017.
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2017 | Journal Article | IST-REx-ID: 720   OA
J. Humplik and G. Tkacik, “Probabilistic models for neural populations that naturally capture global coupling and criticality,” PLoS Computational Biology, vol. 13, no. 9, 2017.
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2017 | Journal Article | IST-REx-ID: 725   OA
R. Harpaz, G. Tkacik, and E. Schneidman, “Discrete modes of social information processing predict individual behavior of fish in a group,” PNAS, vol. 114, no. 38, pp. 10149–10154, 2017.
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2017 | Journal Article | IST-REx-ID: 1104   OA
S. Deny et al., “Multiplexed computations in retinal ganglion cells of a single type,” Nature Communications, vol. 8, no. 1, p. 1964, 2017.
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2017 | Journal Article | IST-REx-ID: 548   OA
D. De Martino, “Maximum entropy modeling of metabolic networks by constraining growth-rate moments predicts coexistence of phenotypes,” Physical Review E, vol. 96, no. 6, 2017.
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2017 | Journal Article | IST-REx-ID: 613   OA
R. P. Chait, J. Ruess, T. Bergmiller, G. Tkacik, and C. C. Guet, “Shaping bacterial population behavior through computer interfaced control of individual cells,” Nature Communications, vol. 8, no. 1, 2017.
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2017 | Journal Article | IST-REx-ID: 947   OA
D. De Martino, F. Capuani, and A. De Martino, “Quantifying the entropic cost of cellular growth control,” Physical Review E Statistical Nonlinear and Soft Matter Physics , vol. 96, no. 1, 2017.
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2017 | Journal Article | IST-REx-ID: 959   OA
D. De Martino, “Scales and multimodal flux distributions in stationary metabolic network models via thermodynamics,” Physical Review E Statistical Nonlinear and Soft Matter Physics , vol. 95, no. 6, p. 062419, 2017.
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