Please note that LibreCat no longer supports Internet Explorer versions 8 or 9 (or earlier).

We recommend upgrading to the latest Internet Explorer, Google Chrome, or Firefox.




128 Publications

2019 | Thesis | IST-REx-ID: 6473
Cepeda Humerez, Sarah A. Estimating Information Flow in Single Cells. IST Austria, 2019. https://doi.org/10.15479/AT:ISTA:6473.
View | Files available | DOI
 
2019 | Journal Article | IST-REx-ID: 6049   OA
De Martino, Daniele. “Feedback-Induced Self-Oscillations in Large Interacting Systems Subjected to Phase Transitions.” Journal of Physics A: Mathematical and Theoretical 52, no. 4 (2019). https://doi.org/10.1088/1751-8121/aaf2dd.
View | Files available | DOI
 
2019 | Journal Article | IST-REx-ID: 6784   OA
Ruess, Jakob, Maros Pleska, Calin C Guet, and Gašper Tkačik. “Molecular Noise of Innate Immunity Shapes Bacteria-Phage Ecologies.” PLoS Computational Biology 15, no. 7 (2019). https://doi.org/10.1371/journal.pcbi.1007168.
View | Files available | DOI
 
2019 | Journal Article | IST-REx-ID: 5945
Petkova, Mariela D., Gasper Tkacik, William Bialek, Eric F. Wieschaus, and Thomas Gregor. “Optimal Decoding of Cellular Identities in a Genetic Network.” Cell 176, no. 4 (2019): 844–855.e15. https://doi.org/10.1016/j.cell.2019.01.007.
View | Files available | DOI
 
2019 | Journal Article | IST-REx-ID: 7422   OA
Sokolowski, Thomas R, Joris Paijmans, Laurens Bossen, Thomas Miedema, Martijn Wehrens, Nils B. Becker, Kazunari Kaizu, Koichi Takahashi, Marileen Dogterom, and Pieter Rein ten Wolde. “EGFRD in All Dimensions.” The Journal of Chemical Physics 150, no. 5 (2019): 054108. https://doi.org/10.1063/1.5064867.
View | DOI | Download (ext.) | arXiv
 
2019 | Journal Article | IST-REx-ID: 6900   OA
Cepeda Humerez, Sarah A, Jakob Ruess, and Gašper Tkačik. “Estimating Information in Time-Varying Signals.” PLoS Computational Biology 15, no. 9 (2019): e1007290. https://doi.org/10.1371/journal.pcbi.1007290.
View | Files available | DOI | PubMed | Europe PMC
 
2019 | Journal Article | IST-REx-ID: 6090   OA
Carballo-Pacheco, Martín, Jonathan Desponds, Tatyana Gavrilchenko, Andreas Mayer, Roshan Prizak, Gautam Reddy, Ilya Nemenman, and Thierry Mora. “Receptor Crosstalk Improves Concentration Sensing of Multiple Ligands.” Physical Review E 99, no. 2 (2019). https://doi.org/10.1103/PhysRevE.99.022423.
View | DOI | Download (ext.)
 
2019 | Thesis | IST-REx-ID: 6071
Prizak, Roshan. Coevolution of Transcription Factors and Their Binding Sites in Sequence Space. IST Austria, 2019. https://doi.org/10.15479/at:ista:th6071.
View | Files available | DOI
 
2019 | Conference Paper | IST-REx-ID: 7606   OA
Hledik, Michal, Thomas R Sokolowski, and Gašper Tkačik. “A Tight Upper Bound on Mutual Information.” In IEEE Information Theory Workshop, ITW 2019, 8989292. IEEE, 2019. https://doi.org/10.1109/ITW44776.2019.8989292.
View | DOI | Download (ext.) | arXiv
 
2018 | Journal Article | IST-REx-ID: 543   OA
Chalk, Matthew J, Olivier Marre, and Gasper Tkacik. “Toward a Unified Theory of Efficient, Predictive, and Sparse Coding.” PNAS 115, no. 1 (2018): 186–91. https://doi.org/10.1073/pnas.1711114115.
View | DOI | Download (ext.)
 
2018 | Research Data | IST-REx-ID: 5587   OA
De Martino, Daniele, and Gasper Tkacik. Supporting Materials “STATISTICAL MECHANICS FOR METABOLIC NETWORKS IN STEADY-STATE GROWTH.” IST Austria, 2018. https://doi.org/10.15479/AT:ISTA:62.
View | Files available | DOI
 
2018 | Journal Article | IST-REx-ID: 31   OA
Ferrari, Ulisse, Stephane Deny, Matthew J Chalk, Gasper Tkacik, Olivier Marre, and Thierry Mora. “Separating Intrinsic Interactions from Extrinsic Correlations in a Network of Sensory Neurons.” Physical Review E 98, no. 4 (2018): 042410. https://doi.org/10.1103/PhysRevE.98.042410.
View | DOI | Download (ext.)
 
2018 | Journal Article | IST-REx-ID: 67   OA
Igler, Claudia, Mato Lagator, Gasper Tkacik, Jonathan P Bollback, and Calin C Guet. “Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring.” Nature Ecology and Evolution 2, no. 10 (2018): 1633–43. https://doi.org/10.1038/s41559-018-0651-y.
View | Files available | DOI
 
2018 | Journal Article | IST-REx-ID: 607   OA
Bodova, Katarina, Jan Haskovec, and Peter Markowich. “Well Posedness and Maximum Entropy Approximation for the Dynamics of Quantitative Traits.” Physica D: Nonlinear Phenomena 376–377 (2018): 108–20. https://doi.org/10.1016/j.physd.2017.10.015.
View | DOI | Download (ext.) | arXiv
 
2018 | Journal Article | IST-REx-ID: 316   OA
Bodova, Katarina, Tadeas Priklopil, David Field, Nicholas H Barton, and Melinda Pickup. “Evolutionary Pathways for the Generation of New Self-Incompatibility Haplotypes in a Non-Self Recognition System.” Genetics 209, no. 3 (2018): 861–83. https://doi.org/10.1534/genetics.118.300748.
View | Files available | DOI | Download (ext.)
 
2018 | Journal Article | IST-REx-ID: 19   OA
Palmer, Adam, Remy P Chait, and Roy Kishony. “Nonoptimal Gene Expression Creates Latent Potential for Antibiotic Resistance.” Molecular Biology and Evolution 35, no. 11 (2018): 2669–84. https://doi.org/10.1093/molbev/msy163.
View | DOI | Download (ext.) | PubMed | Europe PMC
 
2018 | Preprint | IST-REx-ID: 196   OA
Lang, Moritz, and Mikhail Shkolnikov. “Harmonic Dynamics of the Abelian Sandpile.” ArXiv. ArXiv, 2018.
View | Download (ext.)
 
2018 | Journal Article | IST-REx-ID: 305
Misun, Patrick, Axel Birchler, Moritz Lang, Andreas Hierlemann, and Olivier Frey. “Fabrication and Operation of Microfluidic Hanging Drop Networks.” Methods in Molecular Biology 1771 (2018): 183–202. https://doi.org/10.1007/978-1-4939-7792-5_15.
View | DOI
 
2018 | Journal Article | IST-REx-ID: 406   OA
Bod’Ová, Katarína, Gabriel Mitchell, Roy Harpaz, Elad Schneidman, and Gasper Tkacik. “Probabilistic Models of Individual and Collective Animal Behavior.” PLoS One 13, no. 3 (2018). https://doi.org/10.1371/journal.pone.0193049.
View | Files available | DOI
 
2018 | Journal Article | IST-REx-ID: 292   OA
Botella Soler, Vicent, Stephane Deny, Georg S Martius, Olivier Marre, and Gasper Tkacik. “Nonlinear Decoding of a Complex Movie from the Mammalian Retina.” PLoS Computational Biology 14, no. 5 (2018): e1006057. https://doi.org/10.1371/journal.pcbi.1006057.
View | Files available | DOI
 

Search

Filter Publications

Display / Sort

Citation Style: Chicago

Export / Embed