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114 Publications

2018 | Journal Article | IST-REx-ID: 607   OA
Bodova, Katarina, Jan Haskovec, and Peter Markowich. “Well Posedness and Maximum Entropy Approximation for the Dynamics of Quantitative Traits.” Physica D: Nonlinear Phenomena 376–377 (2018): 108–20. https://doi.org/10.1016/j.physd.2017.10.015.
View | DOI | Download (ext.) | arXiv
 
2018 | Journal Article | IST-REx-ID: 19   OA
Palmer, Adam, Remy P Chait, and Roy Kishony. “Nonoptimal Gene Expression Creates Latent Potential for Antibiotic Resistance.” Molecular Biology and Evolution 35, no. 11 (2018): 2669–84. https://doi.org/10.1093/molbev/msy163.
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2018 | Preprint | IST-REx-ID: 196   OA
Lang, Moritz, and Mikhail Shkolnikov. “Harmonic Dynamics of the Abelian Sandpile.” ArXiv. ArXiv, 2018.
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2018 | Journal Article | IST-REx-ID: 305
Misun, Patrick, Axel Birchler, Moritz Lang, Andreas Hierlemann, and Olivier Frey. “Fabrication and Operation of Microfluidic Hanging Drop Networks.” Methods in Molecular Biology 1771 (2018): 183–202. https://doi.org/10.1007/978-1-4939-7792-5_15.
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2018 | Journal Article | IST-REx-ID: 406   OA
Bod’Ová, Katarína, Gabriel Mitchell, Roy Harpaz, Elad Schneidman, and Gasper Tkacik. “Probabilistic Models of Individual and Collective Animal Behavior.” PLoS One 13, no. 3 (2018). https://doi.org/10.1371/journal.pone.0193049.
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2018 | Journal Article | IST-REx-ID: 292
Botella Soler, Vicent, Stephane Deny, Georg S Martius, Olivier Marre, and Gasper Tkacik. “Nonlinear Decoding of a Complex Movie from the Mammalian Retina.” PLoS Computational Biology 14, no. 5 (2018): e1006057. https://doi.org/10.1371/journal.pcbi.1006057.
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2018 | Research Data | IST-REx-ID: 5584   OA
Deny, Stephane, Olivier Marre, Vicente Botella-Soler, Georg S Martius, and Gasper Tkacik. Nonlinear Decoding of a Complex Movie from the Mammalian Retina. IST Austria, 2018. https://doi.org/10.15479/AT:ISTA:98.
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2018 | Journal Article | IST-REx-ID: 306   OA
De Martino, Andrea, and Daniele De Martino. “An Introduction to the Maximum Entropy Approach and Its Application to Inference Problems in Biology.” Heliyon 4, no. 4 (2018). https://doi.org/10.1016/j.heliyon.2018.e00596.
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2018 | Journal Article | IST-REx-ID: 457
Pleska, Maros, Moritz Lang, Dominik Refardt, Bruce Levin, and Calin C Guet. “Phage-Host Population Dynamics Promotes Prophage Acquisition in Bacteria with Innate Immunity.” Nature Ecology and Evolution 2, no. 2 (2018): 359–66. https://doi.org/10.1038/s41559-017-0424-z.
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2018 | Journal Article | IST-REx-ID: 161
De Martino, Daniele, Andersson Anna Mc, Tobias Bergmiller, Calin C Guet, and Gasper Tkacik. “Statistical Mechanics for Metabolic Networks during Steady State Growth.” Nature Communications 9, no. 1 (2018): 2988. https://doi.org/10.1038/s41467-018-05417-9.
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2018 | Journal Article | IST-REx-ID: 281
Granados, Alejandro, Julian Pietsch, Sarah A Cepeda Humerez, Isebail Farquhar, Gasper Tkacik, and Peter Swain. “Distributed and Dynamic Intracellular Organization of Extracellular Information.” PNAS 115, no. 23 (2018): 6088–93. https://doi.org/10.1073/pnas.1716659115.
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2018 | Research Data | IST-REx-ID: 5585
Igler, Claudia, Mato Lagator, Gasper Tkacik, Jonathan P Bollback, and Calin C Guet. Data for the Paper Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring. IST Austria, 2018. https://doi.org/10.15479/AT:ISTA:108.
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2017 | Research Data | IST-REx-ID: 5562   OA
Marre, Olivier, Gasper Tkacik, Dario Amodei, Elad Schneidman, William Bialek, and Michael Berry. Multi-Electrode Array Recording from Salamander Retinal Ganglion Cells. IST Austria, 2017. https://doi.org/10.15479/AT:ISTA:61.
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2017 | Journal Article | IST-REx-ID: 720   OA
Humplik, Jan, and Gasper Tkacik. “Probabilistic Models for Neural Populations That Naturally Capture Global Coupling and Criticality.” PLoS Computational Biology 13, no. 9 (2017). https://doi.org/10.1371/journal.pcbi.1005763.
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2017 | Journal Article | IST-REx-ID: 725   OA
Harpaz, Roy, Gasper Tkacik, and Elad Schneidman. “Discrete Modes of Social Information Processing Predict Individual Behavior of Fish in a Group.” PNAS 114, no. 38 (2017): 10149–54. https://doi.org/10.1073/pnas.1703817114.
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2017 | Journal Article | IST-REx-ID: 1104   OA
Deny, Stephane, Ulisse Ferrari, Emilie Mace, Pierre Yger, Romain Caplette, Serge Picaud, Gasper Tkacik, and Olivier Marre. “Multiplexed Computations in Retinal Ganglion Cells of a Single Type.” Nature Communications 8, no. 1 (2017): 1964. https://doi.org/10.1038/s41467-017-02159-y.
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2017 | Journal Article | IST-REx-ID: 548   OA
De Martino, Daniele. “Maximum Entropy Modeling of Metabolic Networks by Constraining Growth-Rate Moments Predicts Coexistence of Phenotypes.” Physical Review E 96, no. 6 (2017). https://doi.org/10.1103/PhysRevE.96.060401.
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2017 | Journal Article | IST-REx-ID: 613   OA
Chait, Remy P, Jakob Ruess, Tobias Bergmiller, Gasper Tkacik, and Calin C Guet. “Shaping Bacterial Population Behavior through Computer Interfaced Control of Individual Cells.” Nature Communications 8, no. 1 (2017). https://doi.org/10.1038/s41467-017-01683-1.
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2017 | Journal Article | IST-REx-ID: 947   OA
De Martino, Daniele, Fabrizio Capuani, and Andrea De Martino. “Quantifying the Entropic Cost of Cellular Growth Control.” Physical Review E Statistical Nonlinear and Soft Matter Physics 96, no. 1 (2017). https://doi.org/10.1103/PhysRevE.96.010401.
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2017 | Journal Article | IST-REx-ID: 959   OA
De Martino, Daniele. “Scales and Multimodal Flux Distributions in Stationary Metabolic Network Models via Thermodynamics.” Physical Review E Statistical Nonlinear and Soft Matter Physics 95, no. 6 (2017): 062419. https://doi.org/10.1103/PhysRevE.95.062419.
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