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127 Publications

2015 | Journal Article | IST-REx-ID: 1576
Stochastic proofreading mechanism alleviates crosstalk in transcriptional regulation
S.A. Cepeda Humerez, G. Rieckh, G. Tkacik, Physical Review Letters 115 (2015).
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2015 | Conference Paper | IST-REx-ID: 1658
Adaptive moment closure for parameter inference of biochemical reaction networks
S. Bogomolov, T.A. Henzinger, A. Podelski, J. Ruess, C. Schilling, 9308 (2015) 77–89.
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2014 | Journal Article | IST-REx-ID: 3263   OA
Adaptation to changes in higher-order stimulus statistics in the salamander retina
G. Tkacik, A. Ghosh, E. Schneidman, R. Segev, PLoS One 9 (2014).
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2014 | Journal Article | IST-REx-ID: 1896   OA
Mathematical model of alternative mechanism of telomere length maintenance
R. Kollár, K. Bod’ová, J. Nosek, Ľ. Tomáška, Physical Review E Statistical Nonlinear and Soft Matter Physics 89 (2014).
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2014 | Journal Article | IST-REx-ID: 1928
Evolutionary dynamics of infectious diseases in finite populations
J. Humplik, A. Hill, M. Nowak, Journal of Theoretical Biology 360 (2014) 149–162.
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2014 | Journal Article | IST-REx-ID: 1909   OA
The fitness costs of adaptation via phenotypic plasticity and maternal effects
T. Ezard, R. Prizak, R. Hoyle, Functional Ecology 28 (2014) 693–701.
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2014 | Journal Article | IST-REx-ID: 2231   OA
Noise and information transmission in promoters with multiple internal states
G. Rieckh, G. Tkacik, Biophysical Journal 106 (2014) 1194–1204.
View | DOI | Download (ext.) | PubMed | Europe PMC
 
2014 | Journal Article | IST-REx-ID: 537   OA
Fitness consequences of maternal and grandmaternal effects
R. Prizak, T. Ezard, R. Hoyle, Ecology and Evolution 4 (2014) 3139–3145.
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2014 | Conference Paper | IST-REx-ID: 1708
Spatio-temporal representations of uncertainty in spiking neural networks
C. Savin, S. Denève, in:, Neural Information Processing Systems, 2014, pp. 2024–2032.
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2014 | Journal Article | IST-REx-ID: 1931   OA
Emergence of task-dependent representations in working memory circuits
C. Savin, J. Triesch, Frontiers in Computational Neuroscience 8 (2014).
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2014 | Journal Article | IST-REx-ID: 2257
Searching for collective behavior in a large network of sensory neurons
G. Tkacik, O. Marre, D. Amodei, E. Schneidman, W. Bialek, M. Berry, PLoS Computational Biology 10 (2014).
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2014 | Journal Article | IST-REx-ID: 1886   OA
Variance predicts salience in central sensory processing
A. Hermundstad, J. Briguglio, M. Conte, J. Victor, V. Balasubramanian, G. Tkacik, ELife (2014).
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2013 | Journal Article | IST-REx-ID: 2277   OA
Transformation of stimulus correlations by the retina
K. Simmons, J. Prentice, G. Tkacik, J. Homann, H. Yee, S. Palmer, P. Nelson, V. Balasubramanian, PLoS Computational Biology 9 (2013).
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2013 | Journal Article | IST-REx-ID: 2861
Lyapunov exponent and topological entropy plateaus in piecewise linear maps
V. Botella Soler, J. Oteo, J. Ros, P. Glendinning, Journal of Physics A: Mathematical and Theoretical 46 (2013).
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2013 | Book Chapter | IST-REx-ID: 2413
Neuronal oscillations scale up and scale down the brain dynamics
M. Valderrama, V. Botella Soler, M. Le Van Quyen, in:, M. Meyer, Z. Pesenson (Eds.), Multiscale Analysis and Nonlinear Dynamics: From Genes to the Brain, Wiley-VCH, 2013.
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2013 | Journal Article | IST-REx-ID: 2913   OA
Retinal metric: a stimulus distance measure derived from population neural responses
G. Tkacik, E. Granot Atedgi, R. Segev, E. Schneidman, Physical Review Letters 110 (2013).
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2013 | Journal Article | IST-REx-ID: 2850   OA
The simplest maximum entropy model for collective behavior in a neural network
G. Tkacik, O. Marre, T. Mora, D. Amodei, M. Berry, W. Bialek, Journal of Statistical Mechanics Theory and Experiment 2013 (2013) P03011.
View | DOI | Download (ext.) | arXiv
 
2013 | Journal Article | IST-REx-ID: 2863   OA
Stimulus-dependent maximum entropy models of neural population codes
E. Granot Atedgi, G. Tkacik, R. Segev, E. Schneidman, PLoS Computational Biology 9 (2013).
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2013 | Journal Article | IST-REx-ID: 2914   OA
Statistical thermodynamics of natural images
G. Stephens, T. Mora, G. Tkacik, W. Bialek, Physical Review Letters 110 (2013).
View | Files available | DOI | Download (ext.) | arXiv
 
2013 | Journal Article | IST-REx-ID: 2851
A simple method for estimating the entropy of neural activity
M. Berry, G. Tkacik, J. Dubuis, O. Marre, R. Da Silveira, Journal of Statistical Mechanics Theory and Experiment 2013 (2013).
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