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124 Publications

2020 | Preprint | IST-REx-ID: 7463   OA
Lombardi F, Shriki O, Herrmann HJ, de Arcangelis L. 2020. Long-range temporal correlations in the broadband resting state activity of the human brain revealed by neuronal avalanches. bioRxiv.
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2020 | Journal Article | IST-REx-ID: 7569   OA
Grah R, Friedlander T. 2020. The relation between crosstalk and gene regulation form revisited. PLOS Computational Biology. 16(2), e1007642.
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2020 | Journal Article | IST-REx-ID: 7490   OA
Narasimhan M, Johnson AJ, Prizak R, Kaufmann W, Tan S, Casillas Perez BE, Friml J. 2020. Evolutionarily unique mechanistic framework of clathrin-mediated endocytosis in plants. eLife. 9, e52067.
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2020 | Preprint | IST-REx-ID: 7553   OA
Mlynarski WF, Hledik M, Sokolowski TR, Tkačik G. Statistical analysis and optimality of biological systems. bioRxiv.
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2020 | Journal Article | IST-REx-ID: 7251
Lombardi F, Gómez-Extremera M, Bernaola-Galván P, Vetrivelan R, Saper CB, Scammell TE, Ivanov PC. 2020. Critical dynamics and coupling in bursts of cortical rhythms indicate non-homeostatic mechanism for sleep-stage transitions and dual role of VLPO neurons in both sleep and wake. The Journal of neuroscience. 40(1), 171–190.
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2020 | Research Data | IST-REx-ID: 7383   OA
Grah R. 2020. Matlab scripts for the Paper: Gene Amplification as a Form of Population-Level Gene Expression regulation, IST Austria,p.
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2019 | Journal Article | IST-REx-ID: 6046   OA
Mitosch K, Rieckh G, Bollenbach MT. 2019. Temporal order and precision of complex stress responses in individual bacteria. Molecular systems biology. 15(2), e8470.
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2019 | Journal Article | IST-REx-ID: 7103   OA
Wang JWJL, Lombardi F, Zhang X, Anaclet C, Ivanov PC. 2019. Non-equilibrium critical dynamics of bursts in θ and δ rhythms as fundamental characteristic of sleep and wake micro-architecture. PLOS Computational Biology. 15(11), e1007268.
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2019 | Preprint | IST-REx-ID: 7083   OA
Kavcic B, Tkačik G, Bollenbach T. Mechanistic origin of drug interactions between translation-inhibiting antibiotics. bioRxiv.
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2019 | Preprint | IST-REx-ID: 7552   OA
Bialek W, Gregor T, Tkačik G. Action at a distance in transcriptional regulation. arXiv:1912.08579.
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2019 | Journal Article | IST-REx-ID: 5817
Kavcic B, Sakashita A, Noguchi H, Ziherl P. 2019. Limiting shapes of confined lipid vesicles. Soft Matter. 15(4), 602–614.
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2019 | Thesis | IST-REx-ID: 6473
Cepeda Humerez SA. 2019. Estimating information flow in single cells, IST Austria, 135p.
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2019 | Journal Article | IST-REx-ID: 6049   OA
De Martino D. 2019. Feedback-induced self-oscillations in large interacting systems subjected to phase transitions. Journal of Physics A: Mathematical and Theoretical. 52(4), 045002.
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2019 | Journal Article | IST-REx-ID: 6784   OA
Ruess J, Pleska M, Guet CC, Tkačik G. 2019. Molecular noise of innate immunity shapes bacteria-phage ecologies. PLoS Computational Biology. 15(7), e1007168.
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2019 | Journal Article | IST-REx-ID: 5945
Petkova MD, Tkacik G, Bialek W, Wieschaus EF, Gregor T. 2019. Optimal decoding of cellular identities in a genetic network. Cell. 176(4), 844–855.e15.
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2019 | Journal Article | IST-REx-ID: 7422   OA
Sokolowski TR, Paijmans J, Bossen L, Miedema T, Wehrens M, Becker NB, Kaizu K, Takahashi K, Dogterom M, ten Wolde PR. 2019. eGFRD in all dimensions. The Journal of Chemical Physics. 150(5), 054108.
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2019 | Journal Article | IST-REx-ID: 6900   OA
Cepeda Humerez SA, Ruess J, Tkačik G. 2019. Estimating information in time-varying signals. PLoS computational biology. 15(9), e1007290.
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2019 | Journal Article | IST-REx-ID: 6090   OA
Carballo-Pacheco M, Desponds J, Gavrilchenko T, Mayer A, Prizak R, Reddy G, Nemenman I, Mora T. 2019. Receptor crosstalk improves concentration sensing of multiple ligands. Physical Review E. 99(2), 022423.
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2019 | Thesis | IST-REx-ID: 6071
Prizak R. 2019. Coevolution of transcription factors and their binding sites in sequence space, IST Austria, 189p.
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2019 | Conference Paper | IST-REx-ID: 7606   OA
Hledik M, Sokolowski TR, Tkačik G. 2019. A tight upper bound on mutual information. IEEE Information Theory Workshop, ITW 2019. Information Theory Workshop 8989292.
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