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128 Publications
2020 | Journal Article | IST-REx-ID: 7652
Tomanek, Isabella, Rok Grah, M. Lagator, A. M. C. Andersson, Jonathan P Bollback, Gašper Tkačik, and Calin C Guet. “Gene Amplification as a Form of Population-Level Gene Expression Regulation.” Nature Ecology & Evolution 4, no. 4 (2020): 612–25. https://doi.org/10.1038/s41559-020-1132-7.
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2020 | Preprint | IST-REx-ID: 7463 
Lombardi, Fabrizio, Oren Shriki, Hans J Herrmann, and Lucilla de Arcangelis. “Long-Range Temporal Correlations in the Broadband Resting State Activity of the Human Brain Revealed by Neuronal Avalanches.” BioRxiv. Cold Spring Harbor Laboratory, 2020.
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2020 | Journal Article | IST-REx-ID: 7569
Grah, Rok, and Tamar Friedlander. “The Relation between Crosstalk and Gene Regulation Form Revisited.” PLOS Computational Biology 16, no. 2 (2020): e1007642. https://doi.org/10.1371/journal.pcbi.1007642.
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2020 | Journal Article | IST-REx-ID: 7490
Narasimhan, Madhumitha, Alexander J Johnson, Roshan Prizak, Walter Kaufmann, Shutang Tan, Barbara E Casillas Perez, and Jiří Friml. “Evolutionarily Unique Mechanistic Framework of Clathrin-Mediated Endocytosis in Plants.” ELife 9 (2020): e52067. https://doi.org/10.7554/eLife.52067.
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| PubMed | Europe PMC
2020 | Preprint | IST-REx-ID: 7553
Mlynarski, Wiktor F, Michal Hledik, Thomas R Sokolowski, and Gašper Tkačik. “Statistical Analysis and Optimality of Biological Systems.” BioRxiv. Cold Spring Harbor Laboratory, n.d.
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2020 | Preprint | IST-REx-ID: 7673
Kavcic, Bor, Gašper Tkačik, and Tobias Bollenbach. “A Minimal Biophysical Model of Combined Antibiotic Action.” BioRxiv. Cold Spring Harbor Laboratory, 2020.
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2020 | Journal Article | IST-REx-ID: 7251
Lombardi, Fabrizio, Manuel Gómez-Extremera, Pedro Bernaola-Galván, Ramalingam Vetrivelan, Clifford B. Saper, Thomas E. Scammell, and Plamen Ch. Ivanov. “Critical Dynamics and Coupling in Bursts of Cortical Rhythms Indicate Non-Homeostatic Mechanism for Sleep-Stage Transitions and Dual Role of VLPO Neurons in Both Sleep and Wake.” The Journal of Neuroscience 40, no. 1 (2020): 171–90. https://doi.org/10.1523/jneurosci.1278-19.2019.
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2020 | Research Data | IST-REx-ID: 7383
Grah, Rok. Matlab Scripts for the Paper: Gene Amplification as a Form of Population-Level Gene Expression Regulation. IST Austria, 2020. https://doi.org/10.15479/AT:ISTA:7383.
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2020 | Journal Article | IST-REx-ID: 7656
Berry, Michael J., and Gašper Tkačik. “Clustering of Neural Activity: A Design Principle for Population Codes.” Frontiers in Computational Neuroscience 14 (2020): 20. https://doi.org/10.3389/fncom.2020.00020.
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2020 | Preprint | IST-REx-ID: 7675
Grah, Rok, Benjamin Zoller, and Gašper Tkačik. “Normative Models of Enhancer Function.” BioRxiv. Cold Spring Harbor Laboratory, 2020.
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2019 | Journal Article | IST-REx-ID: 6046
Mitosch, Karin, Georg Rieckh, and Mark Tobias Bollenbach. “Temporal Order and Precision of Complex Stress Responses in Individual Bacteria.” Molecular Systems Biology 15, no. 2 (2019). https://doi.org/10.15252/msb.20188470.
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2019 | Journal Article | IST-REx-ID: 7103
Wang, Jilin W. J. L., Fabrizio Lombardi, Xiyun Zhang, Christelle Anaclet, and Plamen Ch. Ivanov. “Non-Equilibrium Critical Dynamics of Bursts in θ and δ Rhythms as Fundamental Characteristic of Sleep and Wake Micro-Architecture.” PLOS Computational Biology 15, no. 11 (2019). https://doi.org/10.1371/journal.pcbi.1007268.
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2019 | Preprint | IST-REx-ID: 7083
Kavcic, Bor, Gašper Tkačik, and Tobias Bollenbach. “Mechanistic Origin of Drug Interactions between Translation-Inhibiting Antibiotics.” BioRxiv. Cold Spring Harbor Laboratory, n.d.
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2019 | Preprint | IST-REx-ID: 7552
Bialek, William, Thomas Gregor, and Gašper Tkačik. “Action at a Distance in Transcriptional Regulation.” ArXiv:1912.08579. ArXiv, n.d.
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| arXiv
2019 | Journal Article | IST-REx-ID: 5817
Kavcic, Bor, A. Sakashita, H. Noguchi, and P. Ziherl. “Limiting Shapes of Confined Lipid Vesicles.” Soft Matter 15, no. 4 (2019): 602–14. https://doi.org/10.1039/c8sm01956h.
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2019 | Thesis | IST-REx-ID: 6473
Cepeda Humerez, Sarah A. Estimating Information Flow in Single Cells. IST Austria, 2019. https://doi.org/10.15479/AT:ISTA:6473.
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2019 | Journal Article | IST-REx-ID: 6049
De Martino, Daniele. “Feedback-Induced Self-Oscillations in Large Interacting Systems Subjected to Phase Transitions.” Journal of Physics A: Mathematical and Theoretical 52, no. 4 (2019). https://doi.org/10.1088/1751-8121/aaf2dd.
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2019 | Journal Article | IST-REx-ID: 6784
Ruess, Jakob, Maros Pleska, Calin C Guet, and Gašper Tkačik. “Molecular Noise of Innate Immunity Shapes Bacteria-Phage Ecologies.” PLoS Computational Biology 15, no. 7 (2019). https://doi.org/10.1371/journal.pcbi.1007168.
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2019 | Journal Article | IST-REx-ID: 5945
Petkova, Mariela D., Gasper Tkacik, William Bialek, Eric F. Wieschaus, and Thomas Gregor. “Optimal Decoding of Cellular Identities in a Genetic Network.” Cell 176, no. 4 (2019): 844–855.e15. https://doi.org/10.1016/j.cell.2019.01.007.
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2019 | Journal Article | IST-REx-ID: 7422
Sokolowski, Thomas R, Joris Paijmans, Laurens Bossen, Thomas Miedema, Martijn Wehrens, Nils B. Becker, Kazunari Kaizu, Koichi Takahashi, Marileen Dogterom, and Pieter Rein ten Wolde. “EGFRD in All Dimensions.” The Journal of Chemical Physics 150, no. 5 (2019): 054108. https://doi.org/10.1063/1.5064867.
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| arXiv