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128 Publications

2020 | Journal Article | IST-REx-ID: 7652
Tomanek, I., Grah, R., Lagator, M., Andersson, A. M. C., Bollback, J. P., Tkačik, G., & Guet, C. C. (2020). Gene amplification as a form of population-level gene expression regulation. Nature Ecology & Evolution, 4(4), 612–625. https://doi.org/10.1038/s41559-020-1132-7
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2020 | Preprint | IST-REx-ID: 7463   OA
Lombardi, F., Shriki, O., Herrmann, H. J., & de Arcangelis, L. (2020). Long-range temporal correlations in the broadband resting state activity of the human brain revealed by neuronal avalanches. BioRxiv. Cold Spring Harbor Laboratory.
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2020 | Journal Article | IST-REx-ID: 7569   OA
Grah, R., & Friedlander, T. (2020). The relation between crosstalk and gene regulation form revisited. PLOS Computational Biology, 16(2), e1007642. https://doi.org/10.1371/journal.pcbi.1007642
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2020 | Journal Article | IST-REx-ID: 7490   OA
Narasimhan, M., Johnson, A. J., Prizak, R., Kaufmann, W., Tan, S., Casillas Perez, B. E., & Friml, J. (2020). Evolutionarily unique mechanistic framework of clathrin-mediated endocytosis in plants. ELife, 9, e52067. https://doi.org/10.7554/eLife.52067
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2020 | Preprint | IST-REx-ID: 7553   OA
Mlynarski, W. F., Hledik, M., Sokolowski, T. R., & Tkačik, G. (n.d.). Statistical analysis and optimality of biological systems. BioRxiv. Cold Spring Harbor Laboratory.
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2020 | Preprint | IST-REx-ID: 7673   OA
Kavcic, B., Tkačik, G., & Bollenbach, T. (2020). A minimal biophysical model of combined antibiotic action. BioRxiv. Cold Spring Harbor Laboratory.
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2020 | Journal Article | IST-REx-ID: 7251
Lombardi, F., Gómez-Extremera, M., Bernaola-Galván, P., Vetrivelan, R., Saper, C. B., Scammell, T. E., & Ivanov, P. C. (2020). Critical dynamics and coupling in bursts of cortical rhythms indicate non-homeostatic mechanism for sleep-stage transitions and dual role of VLPO neurons in both sleep and wake. The Journal of Neuroscience, 40(1), 171–190. https://doi.org/10.1523/jneurosci.1278-19.2019
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2020 | Research Data | IST-REx-ID: 7383
Grah, R. (2020). Matlab scripts for the Paper: Gene Amplification as a Form of Population-Level Gene Expression regulation. IST Austria. https://doi.org/10.15479/AT:ISTA:7383
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2020 | Journal Article | IST-REx-ID: 7656   OA
Berry, M. J., & Tkačik, G. (2020). Clustering of neural activity: A design principle for population codes. Frontiers in Computational Neuroscience, 14, 20. https://doi.org/10.3389/fncom.2020.00020
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2020 | Preprint | IST-REx-ID: 7675   OA
Grah, R., Zoller, B., & Tkačik, G. (2020). Normative models of enhancer function. BioRxiv. Cold Spring Harbor Laboratory.
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2019 | Journal Article | IST-REx-ID: 6046   OA
Mitosch, K., Rieckh, G., & Bollenbach, M. T. (2019). Temporal order and precision of complex stress responses in individual bacteria. Molecular Systems Biology, 15(2). https://doi.org/10.15252/msb.20188470
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2019 | Journal Article | IST-REx-ID: 7103   OA
Wang, J. W. J. L., Lombardi, F., Zhang, X., Anaclet, C., & Ivanov, P. C. (2019). Non-equilibrium critical dynamics of bursts in θ and δ rhythms as fundamental characteristic of sleep and wake micro-architecture. PLOS Computational Biology, 15(11). https://doi.org/10.1371/journal.pcbi.1007268
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2019 | Preprint | IST-REx-ID: 7083   OA
Kavcic, B., Tkačik, G., & Bollenbach, T. (n.d.). Mechanistic origin of drug interactions between translation-inhibiting antibiotics. BioRxiv. Cold Spring Harbor Laboratory.
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2019 | Preprint | IST-REx-ID: 7552   OA
Bialek, W., Gregor, T., & Tkačik, G. (n.d.). Action at a distance in transcriptional regulation. ArXiv:1912.08579. ArXiv.
View | Download (ext.) | arXiv
 
2019 | Journal Article | IST-REx-ID: 5817
Kavcic, B., Sakashita, A., Noguchi, H., & Ziherl, P. (2019). Limiting shapes of confined lipid vesicles. Soft Matter, 15(4), 602–614. https://doi.org/10.1039/c8sm01956h
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2019 | Thesis | IST-REx-ID: 6473
Cepeda Humerez, S. A. (2019). Estimating information flow in single cells. IST Austria. https://doi.org/10.15479/AT:ISTA:6473
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2019 | Journal Article | IST-REx-ID: 6049   OA
De Martino, D. (2019). Feedback-induced self-oscillations in large interacting systems subjected to phase transitions. Journal of Physics A: Mathematical and Theoretical, 52(4). https://doi.org/10.1088/1751-8121/aaf2dd
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2019 | Journal Article | IST-REx-ID: 6784   OA
Ruess, J., Pleska, M., Guet, C. C., & Tkačik, G. (2019). Molecular noise of innate immunity shapes bacteria-phage ecologies. PLoS Computational Biology, 15(7). https://doi.org/10.1371/journal.pcbi.1007168
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2019 | Journal Article | IST-REx-ID: 5945
Petkova, M. D., Tkacik, G., Bialek, W., Wieschaus, E. F., & Gregor, T. (2019). Optimal decoding of cellular identities in a genetic network. Cell, 176(4), 844–855.e15. https://doi.org/10.1016/j.cell.2019.01.007
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2019 | Journal Article | IST-REx-ID: 7422   OA
Sokolowski, T. R., Paijmans, J., Bossen, L., Miedema, T., Wehrens, M., Becker, N. B., … ten Wolde, P. R. (2019). eGFRD in all dimensions. The Journal of Chemical Physics, 150(5), 054108. https://doi.org/10.1063/1.5064867
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