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171 Publications

2022 | Journal Article | IST-REx-ID: 10736 | OA
Lagator M, Sarikas S, Steinrueck M, et al. Predicting bacterial promoter function and evolution from random sequences. eLife. 2022;11. doi:10.7554/eLife.64543
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2022 | Preprint | IST-REx-ID: 10821 | OA
Lombardi F, Herrmann HJ, Parrino L, et al. Alpha rhythm induces attenuation-amplification dynamics in neural activity cascades. bioRxiv. 2022. doi:10.1101/2022.03.03.482657
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2022 | Journal Article | IST-REx-ID: 11638 | OA
Ngampruetikorn V, Sachdeva V, Torrence J, Humplik J, Schwab DJ, Palmer SE. Inferring couplings in networks across order-disorder phase transitions. Physical Review Research. 2022;4(2). doi:10.1103/PhysRevResearch.4.023240
View | Files available | DOI | arXiv
 
2022 | Journal Article | IST-REx-ID: 10530 | OA
Zisis T, Brückner D, Brandstätter T, et al. Disentangling cadherin-mediated cell-cell interactions in collective cancer cell migration. Biophysical Journal. 2022;121(1):P44-60. doi:10.1016/j.bpj.2021.12.006
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2022 | Journal Article | IST-REx-ID: 12081 | OA
Hledik M, Barton NH, Tkačik G. Accumulation and maintenance of information in evolution. PNAS. 2022;119(36). doi:10.1073/pnas.2123152119
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2021 | Journal Article | IST-REx-ID: 7463 | OA
Lombardi F, Shriki O, Herrmann HJ, de Arcangelis L. Long-range temporal correlations in the broadband resting state activity of the human brain revealed by neuronal avalanches. Neurocomputing. 2021;461:657-666. doi:10.1016/j.neucom.2020.05.126
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2021 | Journal Article | IST-REx-ID: 7553 | OA
Mlynarski WF, Hledik M, Sokolowski TR, Tkačik G. Statistical analysis and optimality of neural systems. Neuron. 2021;109(7):1227-1241.e5. doi:10.1016/j.neuron.2021.01.020
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2021 | Preprint | IST-REx-ID: 10579 | OA
Kavcic B, Tkačik G. On token-driven totally asymmetric simple exclusion process. arXiv.
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2021 | Preprint | IST-REx-ID: 10912 | OA
Lombardi F, Pepic S, Shriki O, Tkačik G, De Martino D. Quantifying the coexistence of neuronal oscillations and avalanches. doi:10.48550/ARXIV.2108.06686
View | DOI | Download Preprint (ext.) | arXiv
 
2021 | Journal Article | IST-REx-ID: 8997 | OA
Kavcic B, Tkačik G, Bollenbach MT. Minimal biophysical model of combined antibiotic action. PLOS Computational Biology. 2021;17. doi:10.1371/journal.pcbi.1008529
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2021 | Journal Article | IST-REx-ID: 9283 | OA
Nagy-Staron AA, Tomasek K, Caruso Carter C, et al. Local genetic context shapes the function of a gene regulatory network. eLife. 2021;10. doi:10.7554/elife.65993
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2021 | Journal Article | IST-REx-ID: 9362 | OA
Chalk MJ, Tkačik G, Marre O. Inferring the function performed by a recurrent neural network. PLoS ONE. 2021;16(4 April). doi:10.1371/journal.pone.0248940
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2021 | Journal Article | IST-REx-ID: 9439 | OA
Mlynarski WF, Hermundstad AM. Efficient and adaptive sensory codes. Nature Neuroscience. 2021;24:998-1009. doi:10.1038/s41593-021-00846-0
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2021 | Journal Article | IST-REx-ID: 9828 | OA
Gabrielaitis M. Fast and accurate amplitude demodulation of wideband signals. IEEE Transactions on Signal Processing. 2021;69:4039-4054. doi:10.1109/TSP.2021.3087899
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2021 | Journal Article | IST-REx-ID: 9226 | OA
Tkačik G, Gregor T. The many bits of positional information. Development. 2021;148(2). doi:10.1242/dev.176065
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2021 | Journal Article | IST-REx-ID: 10535 | OA
Bodova K, Szep E, Barton NH. Dynamic maximum entropy provides accurate approximation of structured population dynamics. PLoS Computational Biology. 2021;17(12). doi:10.1371/journal.pcbi.1009661
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2021 | Preprint | IST-REx-ID: 10077 | OA
Nardin M, Csicsvari JL, Tkačik G, Savin C. The structure of hippocampal CA1 interactions optimizes spatial coding across experience. bioRxiv. doi:10.1101/2021.09.28.460602
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2021 | Journal Article | IST-REx-ID: 9822 | OA
Zisis T, Schwarz J, Balles M, et al. Sequential and switchable patterning for studying cellular processes under spatiotemporal control. ACS Applied Materials and Interfaces. 2021;13(30):35545–35560. doi:10.1021/acsami.1c09850
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2020 | Journal Article | IST-REx-ID: 8084 | OA
Lombardi F, Gómez-Extremera M, Bernaola-Galván P, et al. Critical dynamics and coupling in bursts of cortical rhythms indicate non-homeostatic mechanism for sleep-stage transitions and dual role of VLPO neurons in both sleep and wake. Journal of Neuroscience. 2020;40(1):171-190. doi:10.1523/jneurosci.1278-19.2019
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2020 | Research Data | IST-REx-ID: 8097 | OA
Kavcic B. Analysis scripts and research data for the paper “Mechanisms of drug interactions between translation-inhibiting antibiotics.” 2020. doi:10.15479/AT:ISTA:8097
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