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135 Publications

2020 | Preprint | IST-REx-ID: 7675 | OA
Grah, R., Zoller, B., & Tkačik, G. (2020). Normative models of enhancer function. BioRxiv. Cold Spring Harbor Laboratory.
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2020 | Journal Article | IST-REx-ID: 8084 | OA
Lombardi, F., Gómez-Extremera, M., Bernaola-Galván, P., Vetrivelan, R., Saper, C. B., Scammell, T. E., & Ivanov, P. C. (2020). Critical dynamics and coupling in bursts of cortical rhythms indicate non-homeostatic mechanism for sleep-stage transitions and dual role of VLPO neurons in both sleep and wake. Journal of Neuroscience, 40(1), 171–190. https://doi.org/10.1523/jneurosci.1278-19.2019
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2020 | Research Data | IST-REx-ID: 8097 | OA
Kavcic, B. (2020). Analysis scripts and research data for the paper “Mechanisms of drug interactions between translation-inhibiting antibiotics.” IST Austria. https://doi.org/10.15479/AT:ISTA:8097
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2020 | Journal Article | IST-REx-ID: 8105 | OA
Lombardi, F., Wang, J. W. J. L., Zhang, X., & Ivanov, P. C. (2020). Power-law correlations and coupling of active and quiet states underlie a class of complex systems with self-organization at criticality. EPJ Web of Conferences, 230. https://doi.org/10.1051/epjconf/202023000005
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2020 | Thesis | IST-REx-ID: 8155 | OA
Grah, R. (2020). Gene regulation across scales – how biophysical constraints shape evolution. IST Austria. https://doi.org/10.15479/AT:ISTA:8155
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2020 | Research Data | IST-REx-ID: 7383 | OA
Grah, R. (2020). Matlab scripts for the Paper: Gene Amplification as a Form of Population-Level Gene Expression regulation. IST Austria. https://doi.org/10.15479/AT:ISTA:7383
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2020 | Thesis | IST-REx-ID: 8657
Kavcic, B. (2020). Perturbations of protein synthesis: from antibiotics to genetics and physiology. IST Austria. https://doi.org/10.15479/AT:ISTA:8657
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2020 | Journal Article | IST-REx-ID: 8250 | OA
Kavcic, B., Tkačik, G., & Bollenbach, M. T. (2020). Mechanisms of drug interactions between translation-inhibiting antibiotics. Nature Communications, 11. https://doi.org/10.1038/s41467-020-17734-z
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2020 | Preprint | IST-REx-ID: 7673 | OA
Kavcic, B., Tkačik, G., & Bollenbach, T. (2020). A minimal biophysical model of combined antibiotic action. BioRxiv. Cold Spring Harbor Laboratory.
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2020 | Journal Article | IST-REx-ID: 7652 | OA
Tomanek, I., Grah, R., Lagator, M., Andersson, A. M. C., Bollback, J. P., Tkačik, G., & Guet, C. C. (2020). Gene amplification as a form of population-level gene expression regulation. Nature Ecology & Evolution, 4(4), 612–625. https://doi.org/10.1038/s41559-020-1132-7
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2020 | Journal Article | IST-REx-ID: 8698 | OA
Maoz, O., Tkačik, G., Esteki, M. S., Kiani, R., & Schneidman, E. (2020). Learning probabilistic neural representations with randomly connected circuits. Proceedings of the National Academy of Sciences of the United States of America, 117(40), 25066–25073. https://doi.org/10.1073/pnas.1912804117
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2019 | Journal Article | IST-REx-ID: 7422 | OA
Sokolowski, T. R., Paijmans, J., Bossen, L., Miedema, T., Wehrens, M., Becker, N. B., … ten Wolde, P. R. (2019). eGFRD in all dimensions. The Journal of Chemical Physics, 150(5), 054108. https://doi.org/10.1063/1.5064867
View | DOI | Download Preprint (ext.) | arXiv
 
2019 | Preprint | IST-REx-ID: 7552 | OA
Bialek, W., Gregor, T., & Tkačik, G. (n.d.). Action at a distance in transcriptional regulation. ArXiv:1912.08579. ArXiv.
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2019 | Conference Paper | IST-REx-ID: 7606 | OA
Hledik, M., Sokolowski, T. R., & Tkačik, G. (2019). A tight upper bound on mutual information. In IEEE Information Theory Workshop, ITW 2019 (p. 8989292). Visby, Sweden: IEEE. https://doi.org/10.1109/ITW44776.2019.8989292
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2019 | Journal Article | IST-REx-ID: 6046 | OA
Mitosch, K., Rieckh, G., & Bollenbach, M. T. (2019). Temporal order and precision of complex stress responses in individual bacteria. Molecular Systems Biology, 15(2). https://doi.org/10.15252/msb.20188470
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2019 | Journal Article | IST-REx-ID: 6049 | OA
De Martino, D. (2019). Feedback-induced self-oscillations in large interacting systems subjected to phase transitions. Journal of Physics A: Mathematical and Theoretical, 52(4). https://doi.org/10.1088/1751-8121/aaf2dd
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2019 | Thesis | IST-REx-ID: 6071 | OA
Prizak, R. (2019). Coevolution of transcription factors and their binding sites in sequence space. IST Austria. https://doi.org/10.15479/at:ista:th6071
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2019 | Journal Article | IST-REx-ID: 6090 | OA
Carballo-Pacheco, M., Desponds, J., Gavrilchenko, T., Mayer, A., Prizak, R., Reddy, G., … Mora, T. (2019). Receptor crosstalk improves concentration sensing of multiple ligands. Physical Review E, 99(2). https://doi.org/10.1103/PhysRevE.99.022423
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2019 | Thesis | IST-REx-ID: 6473 | OA
Cepeda Humerez, S. A. (2019). Estimating information flow in single cells. IST Austria. https://doi.org/10.15479/AT:ISTA:6473
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2019 | Journal Article | IST-REx-ID: 6784 | OA
Ruess, J., Pleska, M., Guet, C. C., & Tkačik, G. (2019). Molecular noise of innate immunity shapes bacteria-phage ecologies. PLoS Computational Biology, 15(7). https://doi.org/10.1371/journal.pcbi.1007168
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2019 | Journal Article | IST-REx-ID: 6900 | OA
Cepeda Humerez, S. A., Ruess, J., & Tkačik, G. (2019). Estimating information in time-varying signals. PLoS Computational Biology, 15(9), e1007290. https://doi.org/10.1371/journal.pcbi.1007290
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2019 | Preprint | IST-REx-ID: 7083 | OA
Kavcic, B., Tkačik, G., & Bollenbach, T. (n.d.). Mechanistic origin of drug interactions between translation-inhibiting antibiotics. BioRxiv. Cold Spring Harbor Laboratory.
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2019 | Journal Article | IST-REx-ID: 7103 | OA
Wang, J. W. J. L., Lombardi, F., Zhang, X., Anaclet, C., & Ivanov, P. C. (2019). Non-equilibrium critical dynamics of bursts in θ and δ rhythms as fundamental characteristic of sleep and wake micro-architecture. PLOS Computational Biology, 15(11). https://doi.org/10.1371/journal.pcbi.1007268
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2019 | Journal Article | IST-REx-ID: 196 | OA
Lang, M., & Shkolnikov, M. (2019). Harmonic dynamics of the Abelian sandpile. Proceedings of the National Academy of Sciences, 116(8), 2821–2830. https://doi.org/10.1073/pnas.1812015116
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2019 | Journal Article | IST-REx-ID: 5945 | OA
Petkova, M. D., Tkačik, G., Bialek, W., Wieschaus, E. F., & Gregor, T. (2019). Optimal decoding of cellular identities in a genetic network. Cell, 176(4), 844–855.e15. https://doi.org/10.1016/j.cell.2019.01.007
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2019 | Journal Article | IST-REx-ID: 5817 | OA
Kavcic, B., Sakashita, A., Noguchi, H., & Ziherl, P. (2019). Limiting shapes of confined lipid vesicles. Soft Matter, 15(4), 602–614. https://doi.org/10.1039/c8sm01956h
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2018 | Journal Article | IST-REx-ID: 406 | OA
Bod’Ová, K., Mitchell, G., Harpaz, R., Schneidman, E., & Tkačik, G. (2018). Probabilistic models of individual and collective animal behavior. PLoS One, 13(3). https://doi.org/10.1371/journal.pone.0193049
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2018 | Journal Article | IST-REx-ID: 457
Pleska, M., Lang, M., Refardt, D., Levin, B., & Guet, C. C. (2018). Phage-host population dynamics promotes prophage acquisition in bacteria with innate immunity. Nature Ecology and Evolution, 2(2), 359–366. https://doi.org/10.1038/s41559-017-0424-z
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2018 | Journal Article | IST-REx-ID: 543 | OA
Chalk, M. J., Marre, O., & Tkacik, G. (2018). Toward a unified theory of efficient, predictive, and sparse coding. PNAS, 115(1), 186–191. https://doi.org/10.1073/pnas.1711114115
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2018 | Research Data | IST-REx-ID: 5584 | OA
Deny, S., Marre, O., Botella-Soler, V., Martius, G. S., & Tkačik, G. (2018). Nonlinear decoding of a complex movie from the mammalian retina. IST Austria. https://doi.org/10.15479/AT:ISTA:98
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2018 | Research Data | IST-REx-ID: 5585 | OA
Igler, C., Lagator, M., Tkačik, G., Bollback, J. P., & Guet, C. C. (2018). Data for the paper Evolutionary potential of transcription factors for gene regulatory rewiring. IST Austria. https://doi.org/10.15479/AT:ISTA:108
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2018 | Research Data | IST-REx-ID: 5587 | OA
De Martino, D., & Tkačik, G. (2018). Supporting materials “STATISTICAL MECHANICS FOR METABOLIC NETWORKS IN STEADY-STATE GROWTH.” IST Austria. https://doi.org/10.15479/AT:ISTA:62
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2018 | Journal Article | IST-REx-ID: 607 | OA
Bodova, K., Haskovec, J., & Markowich, P. (2018). Well posedness and maximum entropy approximation for the dynamics of quantitative traits. Physica D: Nonlinear Phenomena, 376377, 108–120. https://doi.org/10.1016/j.physd.2017.10.015
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2018 | Journal Article | IST-REx-ID: 281 | OA
Granados, A., Pietsch, J., Cepeda Humerez, S. A., Farquhar, I., Tkacik, G., & Swain, P. (2018). Distributed and dynamic intracellular organization of extracellular information. PNAS, 115(23), 6088–6093. https://doi.org/10.1073/pnas.1716659115
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2018 | Journal Article | IST-REx-ID: 292 | OA
Botella Soler, V., Deny, S., Martius, G. S., Marre, O., & Tkačik, G. (2018). Nonlinear decoding of a complex movie from the mammalian retina. PLoS Computational Biology, 14(5). https://doi.org/10.1371/journal.pcbi.1006057
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2018 | Journal Article | IST-REx-ID: 305
Misun, P., Birchler, A., Lang, M., Hierlemann, A., & Frey, O. (2018). Fabrication and operation of microfluidic hanging drop networks. Methods in Molecular Biology, 1771, 183–202. https://doi.org/10.1007/978-1-4939-7792-5_15
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2018 | Journal Article | IST-REx-ID: 306 | OA
De Martino, A., & De Martino, D. (2018). An introduction to the maximum entropy approach and its application to inference problems in biology. Heliyon, 4(4). https://doi.org/10.1016/j.heliyon.2018.e00596
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2018 | Journal Article | IST-REx-ID: 31 | OA
Ferrari, U., Deny, S., Chalk, M. J., Tkacik, G., Marre, O., & Mora, T. (2018). Separating intrinsic interactions from extrinsic correlations in a network of sensory neurons. Physical Review E, 98(4), 042410. https://doi.org/10.1103/PhysRevE.98.042410
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2018 | Journal Article | IST-REx-ID: 67 | OA
Igler, C., Lagator, M., Tkačik, G., Bollback, J. P., & Guet, C. C. (2018). Evolutionary potential of transcription factors for gene regulatory rewiring. Nature Ecology and Evolution, 2(10), 1633–1643. https://doi.org/10.1038/s41559-018-0651-y
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2018 | Journal Article | IST-REx-ID: 161 | OA
De Martino, D., Mc, A. A., Bergmiller, T., Guet, C. C., & Tkačik, G. (2018). Statistical mechanics for metabolic networks during steady state growth. Nature Communications, 9(1). https://doi.org/10.1038/s41467-018-05417-9
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2018 | Journal Article | IST-REx-ID: 19 | OA
Palmer, A., Chait, R. P., & Kishony, R. (2018). Nonoptimal gene expression creates latent potential for antibiotic resistance. Molecular Biology and Evolution, 35(11), 2669–2684. https://doi.org/10.1093/molbev/msy163
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2018 | Journal Article | IST-REx-ID: 316 | OA
Bod’ová, K., Priklopil, T., Field, D., Barton, N. H., & Pickup, M. (2018). Evolutionary pathways for the generation of new self-incompatibility haplotypes in a non-self recognition system. Genetics, 209(3), 861–883. https://doi.org/10.1534/genetics.118.300748
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2017 | Journal Article | IST-REx-ID: 2016 | OA
Martin Del Campo Sanchez, A., Cepeda Humerez, S. A., & Uhler, C. (2017). Exact goodness-of-fit testing for the Ising model. Scandinavian Journal of Statistics, 44(2), 285–306. https://doi.org/10.1111/sjos.12251
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2017 | Journal Article | IST-REx-ID: 720 | OA
Humplik, J., & Tkačik, G. (2017). Probabilistic models for neural populations that naturally capture global coupling and criticality. PLoS Computational Biology, 13(9). https://doi.org/10.1371/journal.pcbi.1005763
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2017 | Journal Article | IST-REx-ID: 725 | OA
Harpaz, R., Tkacik, G., & Schneidman, E. (2017). Discrete modes of social information processing predict individual behavior of fish in a group. PNAS, 114(38), 10149–10154. https://doi.org/10.1073/pnas.1703817114
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2017 | Journal Article | IST-REx-ID: 730
Savin, C., & Tkacik, G. (2017). Maximum entropy models as a tool for building precise neural controls. Current Opinion in Neurobiology, 46, 120–126. https://doi.org/10.1016/j.conb.2017.08.001
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2017 | Journal Article | IST-REx-ID: 735
Barone, V., Lang, M., Krens, G., Pradhan, S., Shamipour, S., Sako, K., … Heisenberg, C.-P. J. (2017). An effective feedback loop between cell-cell contact duration and morphogen signaling determines cell fate. Developmental Cell, 43(2), 198–211. https://doi.org/10.1016/j.devcel.2017.09.014
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2017 | Journal Article | IST-REx-ID: 548 | OA
De Martino, D. (2017). Maximum entropy modeling of metabolic networks by constraining growth-rate moments predicts coexistence of phenotypes. Physical Review E, 96(6). https://doi.org/10.1103/PhysRevE.96.060401
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2017 | Research Data | IST-REx-ID: 5560 | OA
Bergmiller, T., Andersson, A. M., Tomasek, K., Balleza, E., Kiviet, D., Hauschild, R., … Guet, C. C. (2017). Biased partitioning of the multi-drug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity. IST Austria. https://doi.org/doi:10.15479/AT:ISTA:53
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2017 | Research Data | IST-REx-ID: 5562 | OA
Marre, O., Tkačik, G., Amodei, D., Schneidman, E., Bialek, W., & Berry, M. (2017). Multi-electrode array recording from salamander retinal ganglion cells. IST Austria. https://doi.org/10.15479/AT:ISTA:61
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2017 | Journal Article | IST-REx-ID: 613 | OA
Chait, R. P., Ruess, J., Bergmiller, T., Tkačik, G., & Guet, C. C. (2017). Shaping bacterial population behavior through computer interfaced control of individual cells. Nature Communications, 8(1). https://doi.org/10.1038/s41467-017-01683-1
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2017 | Conference Paper | IST-REx-ID: 652
Der, R., & Martius, G. S. (2017). Dynamical self consistency leads to behavioral development and emergent social interactions in robots. Presented at the ICDL EpiRob: International Conference on Development and Learning and Epigenetic Robotics , Cergy-Pontoise, France: IEEE. https://doi.org/10.1109/DEVLRN.2016.7846789
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2017 | Journal Article | IST-REx-ID: 658 | OA
Der, R., & Martius, G. S. (2017). Self organized behavior generation for musculoskeletal robots. Frontiers in Neurorobotics, 11(MAR). https://doi.org/10.3389/fnbot.2017.00008
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2017 | Journal Article | IST-REx-ID: 665
Bergmiller, T., Andersson, A. M., Tomasek, K., Balleza, E., Kiviet, D., Hauschild, R., … Guet, C. C. (2017). Biased partitioning of the multidrug efflux pump AcrAB TolC underlies long lived phenotypic heterogeneity. Science, 356(6335), 311–315. https://doi.org/10.1126/science.aaf4762
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2017 | Journal Article | IST-REx-ID: 666 | OA
Mitosch, K., Rieckh, G., & Bollenbach, M. T. (2017). Noisy response to antibiotic stress predicts subsequent single cell survival in an acidic environment. Cell Systems, 4(4), 393–403. https://doi.org/10.1016/j.cels.2017.03.001
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2017 | Journal Article | IST-REx-ID: 680 | OA
Chalk, M. J., Masset, P., Gutkin, B., & Denève, S. (2017). Sensory noise predicts divisive reshaping of receptive fields. PLoS Computational Biology, 13(6). https://doi.org/10.1371/journal.pcbi.1005582
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2017 | Journal Article | IST-REx-ID: 823 | OA
Colabrese, S., De Martino, D., Leuzzi, L., & Marinari, E. (2017). Phase transitions in integer linear problems. Journal of Statistical Mechanics: Theory and Experiment, 2017(9). https://doi.org/10.1088/1742-5468/aa85c3
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2017 | Journal Article | IST-REx-ID: 943 | OA
Zagórski, M. P., Tabata, Y., Brandenberg, N., Lutolf, M., Tkacik, G., Bollenbach, T., … Kicheva, A. (2017). Decoding of position in the developing neural tube from antiparallel morphogen gradients. Science, 356(6345), 1379–1383. https://doi.org/10.1126/science.aam5887
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2017 | Journal Article | IST-REx-ID: 947 | OA
De Martino, D., Capuani, F., & De Martino, A. (2017). Quantifying the entropic cost of cellular growth control. Physical Review E Statistical Nonlinear and Soft Matter Physics , 96(1). https://doi.org/10.1103/PhysRevE.96.010401
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2017 | Journal Article | IST-REx-ID: 955 | OA
Friedlander, T., Prizak, R., Barton, N. H., & Tkačik, G. (2017). Evolution of new regulatory functions on biophysically realistic fitness landscapes. Nature Communications, 8(1). https://doi.org/10.1038/s41467-017-00238-8
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2017 | Journal Article | IST-REx-ID: 959 | OA
De Martino, D. (2017). Scales and multimodal flux distributions in stationary metabolic network models via thermodynamics. Physical Review E Statistical Nonlinear and Soft Matter Physics , 95(6), 062419. https://doi.org/10.1103/PhysRevE.95.062419
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2017 | Journal Article | IST-REx-ID: 993 | OA
Levina (Martius), A., & Priesemann, V. (2017). Subsampling scaling. Nature Communications, 8. https://doi.org/10.1038/ncomms15140
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2017 | Journal Article | IST-REx-ID: 1007 | OA
Lang, M., & Sontag, E. (2017). Zeros of nonlinear systems with input invariances. Automatica, 81C, 46–55. https://doi.org/10.1016/j.automatica.2017.03.030
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2017 | Journal Article | IST-REx-ID: 1104 | OA
Deny, S., Ferrari, U., Mace, E., Yger, P., Caplette, R., Picaud, S., … Marre, O. (2017). Multiplexed computations in retinal ganglion cells of a single type. Nature Communications, 8(1). https://doi.org/10.1038/s41467-017-02159-y
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2016 | Conference Paper | IST-REx-ID: 8094 | OA
Martius, G. S., Hostettler, R., Knoll, A., & Der, R. (2016). Self-organized control of an tendon driven arm by differential extrinsic plasticity. In Proceedings of the Artificial Life Conference 2016 (Vol. 28, pp. 142–143). Cancun, Mexico: MIT Press. https://doi.org/10.7551/978-0-262-33936-0-ch029
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2016 | Conference Paper | IST-REx-ID: 948
Monk, T., Savin, C., & Lücke, J. (2016). Neurons equipped with intrinsic plasticity learn stimulus intensity statistics (Vol. 29, pp. 4285–4293). Presented at the NIPS: Neural Information Processing Systems, Barcelona, Spaine: Neural Information Processing Systems.
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2016 | Journal Article | IST-REx-ID: 1188 | OA
De Martino, D., & Masoero, D. (2016). Asymptotic analysis of noisy fitness maximization, applied to metabolism & growth. Journal of Statistical Mechanics: Theory and Experiment, 2016(12). https://doi.org/10.1088/1742-5468/aa4e8f
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2016 | Journal Article | IST-REx-ID: 1197 | OA
Prentice, J., Marre, O., Ioffe, M., Loback, A., Tkačik, G., & Berry, M. (2016). Error-robust modes of the retinal population code. PLoS Computational Biology, 12(11). https://doi.org/10.1371/journal.pcbi.1005148
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2016 | Journal Article | IST-REx-ID: 1203 | OA
Hu, F., Rishishwar, L., Sivadas, A., Mitchell, G., King, J., Murphy, T., … Wang, X. (2016). Comparative genomic analysis of Haemophilus haemolyticus and nontypeable Haemophilus influenzae and a new testing scheme for their discrimination. Journal of Clinical Microbiology, 54(12), 3010–3017. https://doi.org/10.1128/JCM.01511-16
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2016 | Conference Paper | IST-REx-ID: 1214
Martius, G. S., Hostettler, R., Knoll, A., & Der, R. (2016). Compliant control for soft robots: Emergent behavior of a tendon driven anthropomorphic arm (Vol. 2016–November). Presented at the IEEE RSJ International Conference on Intelligent Robots and Systems IROS , Daejeon, Korea: IEEE. https://doi.org/10.1109/IROS.2016.7759138
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2016 | Conference Paper | IST-REx-ID: 1220 | OA
Mikić, G., Stoll, A., Bevirt, J., Grah, R., & Moore, M. (2016). Fuselage boundary layer ingestion propulsion applied to a thin haul commuter aircraft for optimal efficiency (pp. 1–19). Presented at the AIAA: Aviation Technology, Integration, and Operations Conference, Washington, D.C., USA: AIAA. https://doi.org/10.2514/6.2016-3764
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2016 | Journal Article | IST-REx-ID: 1242 | OA
Sokolowski, T. R., Walczak, A., Bialek, W., & Tkacik, G. (2016). Extending the dynamic range of transcription factor action by translational regulation. Physical Review E Statistical Nonlinear and Soft Matter Physics, 93(2). https://doi.org/10.1103/PhysRevE.93.022404
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2016 | Journal Article | IST-REx-ID: 1244 | OA
Recouvreux, P., Sokolowski, T. R., Grammoustianou, A., Tenwolde, P., & Dogterom, M. (2016). Chimera proteins with affinity for membranes and microtubule tips polarize in the membrane of fission yeast cells. PNAS, 113(7), 1811–1816. https://doi.org/10.1073/pnas.1419248113
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2016 | Journal Article | IST-REx-ID: 1248 | OA
Tkacik, G., & Bialek, W. (2016). Information processing in living systems. Annual Review of Condensed Matter Physics, 7, 89–117. https://doi.org/10.1146/annurev-conmatphys-031214-014803
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2016 | Journal Article | IST-REx-ID: 1260 | OA
De Martino, D. (2016). The dual of the space of interactions in neural network models. International Journal of Modern Physics C, 27(6), 1650067. https://doi.org/10.1142/S0129183116500674
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2016 | Journal Article | IST-REx-ID: 1266 | OA
Chalk, M. J., Gutkin, B., & Denève, S. (2016). Neural oscillations as a signature of efficient coding in the presence of synaptic delays. ELife, 5(2016JULY). https://doi.org/10.7554/eLife.13824
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2016 | Journal Article | IST-REx-ID: 1270 | OA
Hillenbrand, P., Gerland, U., & Tkačik, G. (2016). Beyond the French flag model: Exploiting spatial and gene regulatory interactions for positional information. PLoS One, 11(9). https://doi.org/10.1371/journal.pone.0163628
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2016 | Journal Article | IST-REx-ID: 1290 | OA
Stone, L., Baym, M., Lieberman, T., Chait, R. P., Clardy, J., & Kishony, R. (2016). Compounds that select against the tetracycline-resistance efflux pump. Nature Chemical Biology, 12(11), 902–904. https://doi.org/10.1038/nchembio.2176
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2016 | Conference Paper | IST-REx-ID: 1320
Lang, M., & Sontag, E. (2016). Scale-invariant systems realize nonlinear differential operators (Vol. 2016–July). Presented at the ACC: American Control Conference, Boston, MA, USA: IEEE. https://doi.org/10.1109/ACC.2016.7526722
View | Files available | DOI
 
2016 | Journal Article | IST-REx-ID: 1332 | OA
Chait, R. P., Palmer, A., Yelin, I., & Kishony, R. (2016). Pervasive selection for and against antibiotic resistance in inhomogeneous multistress environments. Nature Communications, 7. https://doi.org/10.1038/ncomms10333
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2016 | Journal Article | IST-REx-ID: 1342 | OA
Baym, M., Lieberman, T., Kelsic, E., Chait, R. P., Gross, R., Yelin, I., & Kishony, R. (2016). Spatiotemporal microbial evolution on antibiotic landscapes. Science, 353(6304), 1147–1151. https://doi.org/10.1126/science.aag0822
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2016 | Journal Article | IST-REx-ID: 1358 | OA
Friedlander, T., Prizak, R., Guet, C. C., Barton, N. H., & Tkačik, G. (2016). Intrinsic limits to gene regulation by global crosstalk. Nature Communications, 7. https://doi.org/10.1038/ncomms12307
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2016 | Journal Article | IST-REx-ID: 1394 | OA
De Martino, D., Capuani, F., & De Martino, A. (2016). Growth against entropy in bacterial metabolism: the phenotypic trade-off behind empirical growth rate distributions in E. coli. Physical Biology, 13(3). https://doi.org/10.1088/1478-3975/13/3/036005
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2016 | Journal Article | IST-REx-ID: 1420 | OA
Bod’ová, K., Tkacik, G., & Barton, N. H. (2016). A general approximation for the dynamics of quantitative traits. Genetics, 202(4), 1523–1548. https://doi.org/10.1534/genetics.115.184127
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2016 | Journal Article | IST-REx-ID: 1485 | OA
De Martino, D. (2016). Genome-scale estimate of the metabolic turnover of E. Coli from the energy balance analysis. Physical Biology, 13(1). https://doi.org/10.1088/1478-3975/13/1/016003
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2016 | Conference Paper | IST-REx-ID: 1082 | OA
Chalk, M. J., Marre, O., & Tkacik, G. (2016). Relevant sparse codes with variational information bottleneck (Vol. 29, pp. 1965–1973). Presented at the NIPS: Neural Information Processing Systems, Barcelona, Spain: Neural Information Processing Systems.
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2016 | Conference Paper | IST-REx-ID: 1105
Savin, C., & Tkacik, G. (2016). Estimating nonlinear neural response functions using GP priors and Kronecker methods (Vol. 29, pp. 3610–3618). Presented at the NIPS: Neural Information Processing Systems, Barcelona; Spain: Neural Information Processing Systems.
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2016 | Journal Article | IST-REx-ID: 1148
Schilling, C., Bogomolov, S., Henzinger, T. A., Podelski, A., & Ruess, J. (2016). Adaptive moment closure for parameter inference of biochemical reaction networks. Biosystems, 149, 15–25. https://doi.org/10.1016/j.biosystems.2016.07.005
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2016 | Journal Article | IST-REx-ID: 1170
Lang, M., & Stelling, J. (2016). Modular parameter identification of biomolecular networks. SIAM Journal on Scientific Computing, 38(6), B988–B1008. https://doi.org/10.1137/15M103306X
View | Files available | DOI
 
2016 | Journal Article | IST-REx-ID: 1171
Tkacik, G. (2016). Understanding regulatory networks requires more than computing a multitude of graph statistics: Comment on "Drivers of structural features in gene regulatory networks: From biophysical constraints to biological function" by O. C. Martin et al. Physics of Life Reviews, 17, 166–167. https://doi.org/10.1016/j.plrev.2016.06.005
View | DOI
 
2016 | Thesis | IST-REx-ID: 1128 | OA
Rieckh, G. (2016). Studying the complexities of transcriptional regulation. IST Austria.
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2015 | Journal Article | IST-REx-ID: 1564 | OA
Gilson, M., Savin, C., & Zenke, F. (2015). Editorial: Emergent neural computation from the interaction of different forms of plasticity. Frontiers in Computational Neuroscience, 9(11). https://doi.org/10.3389/fncom.2015.00145
View | Files available | DOI
 
2015 | Journal Article | IST-REx-ID: 1570 | OA
Der, R., & Martius, G. S. (2015). Novel plasticity rule can explain the development of sensorimotor intelligence. PNAS, 112(45), E6224–E6232. https://doi.org/10.1073/pnas.1508400112
View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
2015 | Journal Article | IST-REx-ID: 1576 | OA
Cepeda Humerez, S. A., Rieckh, G., & Tkacik, G. (2015). Stochastic proofreading mechanism alleviates crosstalk in transcriptional regulation. Physical Review Letters, 115(24). https://doi.org/10.1103/PhysRevLett.115.248101
View | Files available | DOI | Download Preprint (ext.)
 
2015 | Journal Article | IST-REx-ID: 1655 | OA
Martius, G. S., & Olbrich, E. (2015). Quantifying emergent behavior of autonomous robots. Entropy, 17(10), 7266–7297. https://doi.org/10.3390/e17107266
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2015 | Conference Paper | IST-REx-ID: 1658
Bogomolov, S., Henzinger, T. A., Podelski, A., Ruess, J., & Schilling, C. (2015). Adaptive moment closure for parameter inference of biochemical reaction networks. Presented at the CMSB: Computational Methods in Systems Biology, Nantes, France: Springer. https://doi.org/10.1007/978-3-319-23401-4_8
View | Files available | DOI
 
2015 | Journal Article | IST-REx-ID: 1666 | OA
Tugrul, M., Paixao, T., Barton, N. H., & Tkačik, G. (2015). Dynamics of transcription factor binding site evolution. PLoS Genetics, 11(11). https://doi.org/10.1371/journal.pgen.1005639
View | Files available | DOI
 
2015 | Journal Article | IST-REx-ID: 1697 | OA
Marre, O., Botella Soler, V., Simmons, K., Mora, T., Tkačik, G., & Berry, M. (2015). High accuracy decoding of dynamical motion from a large retinal population. PLoS Computational Biology, 11(7). https://doi.org/10.1371/journal.pcbi.1004304
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2015 | Journal Article | IST-REx-ID: 1701 | OA
Tkacik, G., Mora, T., Marre, O., Amodei, D., Palmer, S., Berry Ii, M., & Bialek, W. (2015). Thermodynamics and signatures of criticality in a network of neurons. PNAS, 112(37), 11508–11513. https://doi.org/10.1073/pnas.1514188112
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2015 | Journal Article | IST-REx-ID: 1827 | OA
Friedlander, T., Mayo, A., Tlusty, T., & Alon, U. (2015). Evolution of bow-tie architectures in biology. PLoS Computational Biology, 11(3). https://doi.org/10.1371/journal.pcbi.1004055
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