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133 Publications

2015 | Journal Article | IST-REx-ID: 1697 | OA
Marre, O., Botella Soler, V., Simmons, K., Mora, T., Tkačik, G., & Berry, M. (2015). High accuracy decoding of dynamical motion from a large retinal population. PLoS Computational Biology, 11(7). https://doi.org/10.1371/journal.pcbi.1004304
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2015 | Journal Article | IST-REx-ID: 1701 | OA
Tkacik, G., Mora, T., Marre, O., Amodei, D., Palmer, S., Berry Ii, M., & Bialek, W. (2015). Thermodynamics and signatures of criticality in a network of neurons. PNAS, 112(37), 11508–11513. https://doi.org/10.1073/pnas.1514188112
View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
2015 | Journal Article | IST-REx-ID: 1827 | OA
Friedlander, T., Mayo, A., Tlusty, T., & Alon, U. (2015). Evolution of bow-tie architectures in biology. PLoS Computational Biology, 11(3). https://doi.org/10.1371/journal.pcbi.1004055
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2015 | Journal Article | IST-REx-ID: 1861
Ruess, J., & Lygeros, J. (2015). Moment-based methods for parameter inference and experiment design for stochastic biochemical reaction networks. ACM Transactions on Modeling and Computer Simulation, 25(2). https://doi.org/10.1145/2688906
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2015 | Journal Article | IST-REx-ID: 1885 | OA
Tkacik, G., Dubuis, J., Petkova, M., & Gregor, T. (2015). Positional information, positional error, and readout precision in morphogenesis: A mathematical framework. Genetics, 199(1), 39–59. https://doi.org/10.1534/genetics.114.171850
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2015 | Journal Article | IST-REx-ID: 1940 | OA
Sokolowski, T. R., & Tkacik, G. (2015). Optimizing information flow in small genetic networks. IV. Spatial coupling. Physical Review E Statistical Nonlinear and Soft Matter Physics, 91(6). https://doi.org/10.1103/PhysRevE.91.062710
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2015 | Journal Article | IST-REx-ID: 1538 | OA
Ruess, J., Parise, F., Milias Argeitis, A., Khammash, M., & Lygeros, J. (2015). Iterative experiment design guides the characterization of a light-inducible gene expression circuit. PNAS, 112(26), 8148–8153. https://doi.org/10.1073/pnas.1423947112
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2015 | Journal Article | IST-REx-ID: 1539 | OA
Ruess, J. (2015). Minimal moment equations for stochastic models of biochemical reaction networks with partially finite state space. Journal of Chemical Physics, 143(24). https://doi.org/10.1063/1.4937937
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2014 | Journal Article | IST-REx-ID: 2231 | OA
Rieckh, G., & Tkacik, G. (2014). Noise and information transmission in promoters with multiple internal states. Biophysical Journal, 106(5), 1194–1204. https://doi.org/10.1016/j.bpj.2014.01.014
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2014 | Journal Article | IST-REx-ID: 2257 | OA
Tkačik, G., Marre, O., Amodei, D., Schneidman, E., Bialek, W., & Berry, M. (2014). Searching for collective behavior in a large network of sensory neurons. PLoS Computational Biology, 10(1). https://doi.org/10.1371/journal.pcbi.1003408
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