Please note that LibreCat no longer supports Internet Explorer versions 8 or 9 (or earlier).
We recommend upgrading to the latest Internet Explorer, Google Chrome, or Firefox.
134 Publications
2015 | Journal Article | IST-REx-ID: 1666 | 
Dynamics of transcription factor binding site evolution
M. Tugrul, T. Paixao, N.H. Barton, G. Tkačik, PLoS Genetics 11 (2015).
View
| Files available
| DOI
M. Tugrul, T. Paixao, N.H. Barton, G. Tkačik, PLoS Genetics 11 (2015).
2015 | Journal Article | IST-REx-ID: 1697 |
High accuracy decoding of dynamical motion from a large retinal population
O. Marre, V. Botella Soler, K. Simmons, T. Mora, G. Tkačik, M. Berry, PLoS Computational Biology 11 (2015).
View
| Files available
| DOI
O. Marre, V. Botella Soler, K. Simmons, T. Mora, G. Tkačik, M. Berry, PLoS Computational Biology 11 (2015).
2015 | Journal Article | IST-REx-ID: 1701 |
Thermodynamics and signatures of criticality in a network of neurons
G. Tkacik, T. Mora, O. Marre, D. Amodei, S. Palmer, M. Berry Ii, W. Bialek, PNAS 112 (2015) 11508–11513.
View
| DOI
| Download Submitted Version (ext.)
| PubMed | Europe PMC
G. Tkacik, T. Mora, O. Marre, D. Amodei, S. Palmer, M. Berry Ii, W. Bialek, PNAS 112 (2015) 11508–11513.
2015 | Journal Article | IST-REx-ID: 1827 |
Evolution of bow-tie architectures in biology
T. Friedlander, A. Mayo, T. Tlusty, U. Alon, PLoS Computational Biology 11 (2015).
View
| Files available
| DOI
T. Friedlander, A. Mayo, T. Tlusty, U. Alon, PLoS Computational Biology 11 (2015).
2015 | Journal Article | IST-REx-ID: 1861
Moment-based methods for parameter inference and experiment design for stochastic biochemical reaction networks
J. Ruess, J. Lygeros, ACM Transactions on Modeling and Computer Simulation 25 (2015).
View
| DOI
J. Ruess, J. Lygeros, ACM Transactions on Modeling and Computer Simulation 25 (2015).
2015 | Journal Article | IST-REx-ID: 1885 |
Positional information, positional error, and readout precision in morphogenesis: A mathematical framework
G. Tkacik, J. Dubuis, M. Petkova, T. Gregor, Genetics 199 (2015) 39–59.
View
| DOI
| Download Preprint (ext.)
G. Tkacik, J. Dubuis, M. Petkova, T. Gregor, Genetics 199 (2015) 39–59.
2015 | Journal Article | IST-REx-ID: 1940 |
Optimizing information flow in small genetic networks. IV. Spatial coupling
T.R. Sokolowski, G. Tkacik, Physical Review E Statistical Nonlinear and Soft Matter Physics 91 (2015).
View
| DOI
| Download Preprint (ext.)
T.R. Sokolowski, G. Tkacik, Physical Review E Statistical Nonlinear and Soft Matter Physics 91 (2015).
2015 | Journal Article | IST-REx-ID: 1538 |
Iterative experiment design guides the characterization of a light-inducible gene expression circuit
J. Ruess, F. Parise, A. Milias Argeitis, M. Khammash, J. Lygeros, PNAS 112 (2015) 8148–8153.
View
| DOI
| Download Submitted Version (ext.)
| PubMed | Europe PMC
J. Ruess, F. Parise, A. Milias Argeitis, M. Khammash, J. Lygeros, PNAS 112 (2015) 8148–8153.
2015 | Journal Article | IST-REx-ID: 1539 |
Minimal moment equations for stochastic models of biochemical reaction networks with partially finite state space
J. Ruess, Journal of Chemical Physics 143 (2015).
View
| Files available
| DOI
J. Ruess, Journal of Chemical Physics 143 (2015).
2014 | Journal Article | IST-REx-ID: 2231 |
Noise and information transmission in promoters with multiple internal states
G. Rieckh, G. Tkacik, Biophysical Journal 106 (2014) 1194–1204.
View
| DOI
| Download Submitted Version (ext.)
| PubMed | Europe PMC
G. Rieckh, G. Tkacik, Biophysical Journal 106 (2014) 1194–1204.