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120 Publications

2016 | Journal Article | IST-REx-ID: 1242   OA
T. R. Sokolowski, A. Walczak, W. Bialek, and G. Tkacik, “Extending the dynamic range of transcription factor action by translational regulation,” Physical Review E Statistical Nonlinear and Soft Matter Physics, vol. 93, no. 2, 2016.
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2015 | Journal Article | IST-REx-ID: 1666   OA
M. Tugrul, T. Paixao, N. H. Barton, and G. Tkacik, “Dynamics of transcription factor binding site evolution,” PLoS Genetics, vol. 11, no. 11, 2015.
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2015 | Journal Article | IST-REx-ID: 1940   OA
T. R. Sokolowski and G. Tkacik, “Optimizing information flow in small genetic networks. IV. Spatial coupling,” Physical Review E Statistical Nonlinear and Soft Matter Physics, vol. 91, no. 6, 2015.
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2015 | Journal Article | IST-REx-ID: 1539   OA
J. Ruess, “Minimal moment equations for stochastic models of biochemical reaction networks with partially finite state space,” Journal of Chemical Physics, vol. 143, no. 24, 2015.
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2015 | Journal Article | IST-REx-ID: 1697   OA
O. Marre, V. Botella Soler, K. Simmons, T. Mora, G. Tkacik, and M. Berry, “High accuracy decoding of dynamical motion from a large retinal population,” PLoS Computational Biology, vol. 11, no. 7, 2015.
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2015 | Journal Article | IST-REx-ID: 1655   OA
G. S. Martius and E. Olbrich, “Quantifying emergent behavior of autonomous robots,” Entropy, vol. 17, no. 10, pp. 7266–7297, 2015.
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2015 | Journal Article | IST-REx-ID: 1701   OA
G. Tkacik et al., “Thermodynamics and signatures of criticality in a network of neurons,” PNAS, vol. 112, no. 37, pp. 11508–11513, 2015.
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2015 | Journal Article | IST-REx-ID: 1827   OA
T. Friedlander, A. Mayo, T. Tlusty, and U. Alon, “Evolution of bow-tie architectures in biology,” PLoS Computational Biology, vol. 11, no. 3, 2015.
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2015 | Journal Article | IST-REx-ID: 1570   OA
R. Der and G. S. Martius, “Novel plasticity rule can explain the development of sensorimotor intelligence,” PNAS, vol. 112, no. 45, pp. E6224–E6232, 2015.
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2015 | Journal Article | IST-REx-ID: 1861
J. Ruess and J. Lygeros, “Moment-based methods for parameter inference and experiment design for stochastic biochemical reaction networks,” ACM Transactions on Modeling and Computer Simulation, vol. 25, no. 2, 2015.
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2015 | Journal Article | IST-REx-ID: 1885   OA
G. Tkacik, J. Dubuis, M. Petkova, and T. Gregor, “Positional information, positional error, and readout precision in morphogenesis: A mathematical framework,” Genetics, vol. 199, no. 1, pp. 39–59, 2015.
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2015 | Journal Article | IST-REx-ID: 1564   OA
M. Gilson, C. Savin, and F. Zenke, “Editorial: Emergent neural computation from the interaction of different forms of plasticity,” Frontiers in Computational Neuroscience, vol. 9, no. 11, 2015.
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2015 | Journal Article | IST-REx-ID: 1538   OA
J. Ruess, F. Parise, A. Milias Argeitis, M. Khammash, and J. Lygeros, “Iterative experiment design guides the characterization of a light-inducible gene expression circuit,” PNAS, vol. 112, no. 26, pp. 8148–8153, 2015.
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2015 | Journal Article | IST-REx-ID: 1576
S. A. Cepeda Humerez, G. Rieckh, and G. Tkacik, “Stochastic proofreading mechanism alleviates crosstalk in transcriptional regulation,” Physical Review Letters, vol. 115, no. 24, 2015.
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2015 | Conference Paper | IST-REx-ID: 1658
S. Bogomolov, T. A. Henzinger, A. Podelski, J. Ruess, and C. Schilling, “Adaptive moment closure for parameter inference of biochemical reaction networks,” vol. 9308. Springer, pp. 77–89, 2015.
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2014 | Journal Article | IST-REx-ID: 3263   OA
G. Tkacik, A. Ghosh, E. Schneidman, and R. Segev, “Adaptation to changes in higher-order stimulus statistics in the salamander retina,” PLoS One, vol. 9, no. 1, 2014.
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2014 | Journal Article | IST-REx-ID: 1896   OA
R. Kollár, K. Bod’ová, J. Nosek, and Ľ. Tomáška, “Mathematical model of alternative mechanism of telomere length maintenance,” Physical Review E Statistical Nonlinear and Soft Matter Physics, vol. 89, no. 3, 2014.
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2014 | Journal Article | IST-REx-ID: 1928
J. Humplik, A. Hill, and M. Nowak, “Evolutionary dynamics of infectious diseases in finite populations,” Journal of Theoretical Biology, vol. 360, pp. 149–162, 2014.
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2014 | Journal Article | IST-REx-ID: 1909   OA
T. Ezard, R. Prizak, and R. Hoyle, “The fitness costs of adaptation via phenotypic plasticity and maternal effects,” Functional Ecology, vol. 28, no. 3, pp. 693–701, 2014.
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2014 | Journal Article | IST-REx-ID: 2231   OA
G. Rieckh and G. Tkacik, “Noise and information transmission in promoters with multiple internal states,” Biophysical Journal, vol. 106, no. 5, pp. 1194–1204, 2014.
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