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112 Publications

2018 | Journal Article | IST-REx-ID: 306   OA
De Martino, Andrea, and Daniele De Martino. “An Introduction to the Maximum Entropy Approach and Its Application to Inference Problems in Biology.” Heliyon 4, no. 4 (2018). https://doi.org/10.1016/j.heliyon.2018.e00596.
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2018 | Research Data | IST-REx-ID: 5585
Igler, Claudia, Mato Lagator, Gasper Tkacik, Jonathan P Bollback, and Calin C Guet. Data for the Paper Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring. IST Austria, 2018. https://doi.org/10.15479/AT:ISTA:108.
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2018 | Journal Article | IST-REx-ID: 161   OA
De Martino, Daniele, Andersson Anna Mc, Tobias Bergmiller, Calin C Guet, and Gasper Tkacik. “Statistical Mechanics for Metabolic Networks during Steady State Growth.” Nature Communications 9, no. 1 (2018): 2988. https://doi.org/10.1038/s41467-018-05417-9.
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2018 | Journal Article | IST-REx-ID: 281   OA
Granados, Alejandro, Julian Pietsch, Sarah A Cepeda Humerez, Isebail Farquhar, Gasper Tkacik, and Peter Swain. “Distributed and Dynamic Intracellular Organization of Extracellular Information.” PNAS 115, no. 23 (2018): 6088–93. https://doi.org/10.1073/pnas.1716659115.
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2018 | Journal Article | IST-REx-ID: 457
Pleska, Maros, Moritz Lang, Dominik Refardt, Bruce Levin, and Calin C Guet. “Phage-Host Population Dynamics Promotes Prophage Acquisition in Bacteria with Innate Immunity.” Nature Ecology and Evolution 2, no. 2 (2018): 359–66. https://doi.org/10.1038/s41559-017-0424-z.
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2017 | Journal Article | IST-REx-ID: 1104   OA
Deny, Stephane, Ulisse Ferrari, Emilie Mace, Pierre Yger, Romain Caplette, Serge Picaud, Gasper Tkacik, and Olivier Marre. “Multiplexed Computations in Retinal Ganglion Cells of a Single Type.” Nature Communications 8, no. 1 (2017). https://doi.org/10.1038/s41467-017-02159-y.
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2017 | Research Data | IST-REx-ID: 5562   OA
Marre, Olivier, Gasper Tkacik, Dario Amodei, Elad Schneidman, William Bialek, and Michael Berry. Multi-Electrode Array Recording from Salamander Retinal Ganglion Cells. IST Austria, 2017. https://doi.org/10.15479/AT:ISTA:61.
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2017 | Journal Article | IST-REx-ID: 720   OA
Humplik, Jan, and Gasper Tkacik. “Probabilistic Models for Neural Populations That Naturally Capture Global Coupling and Criticality.” PLoS Computational Biology 13, no. 9 (2017). https://doi.org/10.1371/journal.pcbi.1005763.
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2017 | Journal Article | IST-REx-ID: 725   OA
Harpaz, Roy, Gasper Tkacik, and Elad Schneidman. “Discrete Modes of Social Information Processing Predict Individual Behavior of Fish in a Group.” PNAS 114, no. 38 (2017): 10149–54. https://doi.org/10.1073/pnas.1703817114.
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2017 | Journal Article | IST-REx-ID: 548   OA
De Martino, Daniele. “Maximum Entropy Modeling of Metabolic Networks by Constraining Growth-Rate Moments Predicts Coexistence of Phenotypes.” Physical Review E 96, no. 6 (2017). https://doi.org/10.1103/PhysRevE.96.060401.
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2017 | Journal Article | IST-REx-ID: 613   OA
Chait, Remy P, Jakob Ruess, Tobias Bergmiller, Gasper Tkacik, and Calin C Guet. “Shaping Bacterial Population Behavior through Computer Interfaced Control of Individual Cells.” Nature Communications 8, no. 1 (2017). https://doi.org/10.1038/s41467-017-01683-1.
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2017 | Journal Article | IST-REx-ID: 947   OA
De Martino, Daniele, Fabrizio Capuani, and Andrea De Martino. “Quantifying the Entropic Cost of Cellular Growth Control.” Physical Review E Statistical Nonlinear and Soft Matter Physics 96, no. 1 (2017). https://doi.org/10.1103/PhysRevE.96.010401.
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2017 | Journal Article | IST-REx-ID: 959   OA
De Martino, Daniele. “Scales and Multimodal Flux Distributions in Stationary Metabolic Network Models via Thermodynamics.” Physical Review E Statistical Nonlinear and Soft Matter Physics 95, no. 6 (2017): 062419. https://doi.org/10.1103/PhysRevE.95.062419.
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2017 | Conference Paper | IST-REx-ID: 652
Der, Ralf, and Georg S Martius. “Dynamical Self Consistency Leads to Behavioral Development and Emergent Social Interactions in Robots.” IEEE, 2017. https://doi.org/10.1109/DEVLRN.2016.7846789.
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2017 | Journal Article | IST-REx-ID: 823   OA
Colabrese, Simona, Daniele De Martino, Luca Leuzzi, and Enzo Marinari. “Phase Transitions in Integer Linear Problems.” Journal of Statistical Mechanics: Theory and Experiment 2017, no. 9 (2017). https://doi.org/10.1088/1742-5468/aa85c3.
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2017 | Journal Article | IST-REx-ID: 943   OA
Zagórski, Marcin P, Yoji Tabata, Nathalie Brandenberg, Matthias Lutolf, Gasper Tkacik, Tobias Bollenbach, James Briscoe, and Anna Kicheva. “Decoding of Position in the Developing Neural Tube from Antiparallel Morphogen Gradients.” Science 356, no. 6345 (2017): 1379–83. https://doi.org/10.1126/science.aam5887.
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2017 | Journal Article | IST-REx-ID: 993   OA
Levina (Martius), Anna, and Viola Priesemann. “Subsampling Scaling.” Nature Communications 8 (2017). https://doi.org/10.1038/ncomms15140.
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2017 | Journal Article | IST-REx-ID: 955   OA
Friedlander, Tamar, Roshan Prizak, Nicholas H Barton, and Gasper Tkacik. “Evolution of New Regulatory Functions on Biophysically Realistic Fitness Landscapes.” Nature Communications 8, no. 1 (2017): 216. https://doi.org/10.1038/s41467-017-00238-8.
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2017 | Journal Article | IST-REx-ID: 658   OA
Der, Ralf, and Georg S Martius. “Self Organized Behavior Generation for Musculoskeletal Robots.” Frontiers in Neurorobotics 11, no. MAR (2017). https://doi.org/10.3389/fnbot.2017.00008.
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2017 | Journal Article | IST-REx-ID: 665
Bergmiller, Tobias, Anna M Andersson, Kathrin Tomasek, Enrique Balleza, Daniel Kiviet, Robert Hauschild, Gasper Tkacik, and Calin C Guet. “Biased Partitioning of the Multidrug Efflux Pump AcrAB TolC Underlies Long Lived Phenotypic Heterogeneity.” Science 356, no. 6335 (2017): 311–15. https://doi.org/10.1126/science.aaf4762.
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