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134 Publications

2015 | Journal Article | IST-REx-ID: 1666 | OA
Tugrul, M., Paixao, T., Barton, N. H., & Tkačik, G. (2015). Dynamics of transcription factor binding site evolution. PLoS Genetics, 11(11). https://doi.org/10.1371/journal.pgen.1005639
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2015 | Journal Article | IST-REx-ID: 1697 | OA
Marre, O., Botella Soler, V., Simmons, K., Mora, T., Tkačik, G., & Berry, M. (2015). High accuracy decoding of dynamical motion from a large retinal population. PLoS Computational Biology, 11(7). https://doi.org/10.1371/journal.pcbi.1004304
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2015 | Journal Article | IST-REx-ID: 1701 | OA
Tkacik, G., Mora, T., Marre, O., Amodei, D., Palmer, S., Berry Ii, M., & Bialek, W. (2015). Thermodynamics and signatures of criticality in a network of neurons. PNAS, 112(37), 11508–11513. https://doi.org/10.1073/pnas.1514188112
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2015 | Journal Article | IST-REx-ID: 1827 | OA
Friedlander, T., Mayo, A., Tlusty, T., & Alon, U. (2015). Evolution of bow-tie architectures in biology. PLoS Computational Biology, 11(3). https://doi.org/10.1371/journal.pcbi.1004055
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2015 | Journal Article | IST-REx-ID: 1861
Ruess, J., & Lygeros, J. (2015). Moment-based methods for parameter inference and experiment design for stochastic biochemical reaction networks. ACM Transactions on Modeling and Computer Simulation, 25(2). https://doi.org/10.1145/2688906
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2015 | Journal Article | IST-REx-ID: 1885 | OA
Tkacik, G., Dubuis, J., Petkova, M., & Gregor, T. (2015). Positional information, positional error, and readout precision in morphogenesis: A mathematical framework. Genetics, 199(1), 39–59. https://doi.org/10.1534/genetics.114.171850
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2015 | Journal Article | IST-REx-ID: 1940 | OA
Sokolowski, T. R., & Tkacik, G. (2015). Optimizing information flow in small genetic networks. IV. Spatial coupling. Physical Review E Statistical Nonlinear and Soft Matter Physics, 91(6). https://doi.org/10.1103/PhysRevE.91.062710
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2015 | Journal Article | IST-REx-ID: 1538 | OA
Ruess, J., Parise, F., Milias Argeitis, A., Khammash, M., & Lygeros, J. (2015). Iterative experiment design guides the characterization of a light-inducible gene expression circuit. PNAS, 112(26), 8148–8153. https://doi.org/10.1073/pnas.1423947112
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2015 | Journal Article | IST-REx-ID: 1539 | OA
Ruess, J. (2015). Minimal moment equations for stochastic models of biochemical reaction networks with partially finite state space. Journal of Chemical Physics, 143(24). https://doi.org/10.1063/1.4937937
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2014 | Journal Article | IST-REx-ID: 2231 | OA
Rieckh, G., & Tkacik, G. (2014). Noise and information transmission in promoters with multiple internal states. Biophysical Journal, 106(5), 1194–1204. https://doi.org/10.1016/j.bpj.2014.01.014
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2014 | Journal Article | IST-REx-ID: 2257 | OA
Tkačik, G., Marre, O., Amodei, D., Schneidman, E., Bialek, W., & Berry, M. (2014). Searching for collective behavior in a large network of sensory neurons. PLoS Computational Biology, 10(1). https://doi.org/10.1371/journal.pcbi.1003408
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2014 | Journal Article | IST-REx-ID: 537 | OA
Prizak, R., Ezard, T., & Hoyle, R. (2014). Fitness consequences of maternal and grandmaternal effects. Ecology and Evolution, 4(15), 3139–3145. https://doi.org/10.1002/ece3.1150
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2014 | Conference Paper | IST-REx-ID: 1708
Savin, C., & Denève, S. (2014). Spatio-temporal representations of uncertainty in spiking neural networks (Vol. 3, pp. 2024–2032). Presented at the NIPS: Neural Information Processing Systems, Montreal, Canada: Neural Information Processing Systems.
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2014 | Journal Article | IST-REx-ID: 1886 | OA
Hermundstad, A., Briguglio, J., Conte, M., Victor, J., Balasubramanian, V., & Tkačik, G. (2014). Variance predicts salience in central sensory processing. ELife, (November). https://doi.org/10.7554/eLife.03722
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2014 | Journal Article | IST-REx-ID: 1896 | OA
Kollár, R., Bod’ová, K., Nosek, J., & Tomáška, Ľ. (2014). Mathematical model of alternative mechanism of telomere length maintenance. Physical Review E Statistical Nonlinear and Soft Matter Physics, 89(3). https://doi.org/10.1103/PhysRevE.89.032701
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2014 | Journal Article | IST-REx-ID: 1909 | OA
Ezard, T., Prizak, R., & Hoyle, R. (2014). The fitness costs of adaptation via phenotypic plasticity and maternal effects. Functional Ecology, 28(3), 693–701. https://doi.org/10.1111/1365-2435.12207
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2014 | Journal Article | IST-REx-ID: 1928
Humplik, J., Hill, A., & Nowak, M. (2014). Evolutionary dynamics of infectious diseases in finite populations. Journal of Theoretical Biology, 360, 149–162. https://doi.org/10.1016/j.jtbi.2014.06.039
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2014 | Journal Article | IST-REx-ID: 1931 | OA
Savin, C., & Triesch, J. (2014). Emergence of task-dependent representations in working memory circuits. Frontiers in Computational Neuroscience, 8(MAY). https://doi.org/10.3389/fncom.2014.00057
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2014 | Journal Article | IST-REx-ID: 3263 | OA
Tkačik, G., Ghosh, A., Schneidman, E., & Segev, R. (2014). Adaptation to changes in higher-order stimulus statistics in the salamander retina. PLoS One, 9(1). https://doi.org/10.1371/journal.pone.0085841
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2013 | Journal Article | IST-REx-ID: 2277 | OA
Simmons, K., Prentice, J., Tkačik, G., Homann, J., Yee, H., Palmer, S., … Balasubramanian, V. (2013). Transformation of stimulus correlations by the retina. PLoS Computational Biology, 9(12). https://doi.org/10.1371/journal.pcbi.1003344
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