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112 Publications

2019 | Journal Article | IST-REx-ID: 6046   OA
Mitosch, Karin, Georg Rieckh, and Mark Tobias Bollenbach. “Temporal Order and Precision of Complex Stress Responses in Individual Bacteria.” Molecular Systems Biology 15, no. 2 (2019): e8470. https://doi.org/10.15252/msb.20188470.
View | DOI | Download (ext.) | PubMed | Europe PMC
 
2019 | Journal Article | IST-REx-ID: 5817
Kavcic, Bor, A. Sakashita, H. Noguchi, and P. Ziherl. “Limiting Shapes of Confined Lipid Vesicles.” Soft Matter 15, no. 4 (2019): 602–14. https://doi.org/10.1039/c8sm01956h.
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2019 | Thesis | IST-REx-ID: 6473
Cepeda Humerez, Sarah A. Estimating Information Flow in Single Cells. IST Austria, 2019. https://doi.org/10.15479/AT:ISTA:6473.
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2019 | Journal Article | IST-REx-ID: 5945
Petkova, Mariela D., Gasper Tkacik, William Bialek, Eric F. Wieschaus, and Thomas Gregor. “Optimal Decoding of Cellular Identities in a Genetic Network.” Cell 176, no. 4 (2019): 844–855.e15. https://doi.org/10.1016/j.cell.2019.01.007.
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2019 | Journal Article | IST-REx-ID: 6049   OA
De Martino, Daniele. “Feedback-Induced Self-Oscillations in Large Interacting Systems Subjected to Phase Transitions.” Journal of Physics A: Mathematical and Theoretical 52, no. 4 (2019): 045002. https://doi.org/10.1088/1751-8121/aaf2dd.
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2019 | Journal Article | IST-REx-ID: 6784   OA
Ruess, Jakob, Maros Pleska, Calin C Guet, and Gašper Tkačik. “Molecular Noise of Innate Immunity Shapes Bacteria-Phage Ecologies.” PLoS Computational Biology 15, no. 7 (2019). https://doi.org/10.1371/journal.pcbi.1007168.
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2019 | Journal Article | IST-REx-ID: 6090   OA
Carballo-Pacheco, Martín, Jonathan Desponds, Tatyana Gavrilchenko, Andreas Mayer, Roshan Prizak, Gautam Reddy, Ilya Nemenman, and Thierry Mora. “Receptor Crosstalk Improves Concentration Sensing of Multiple Ligands.” Physical Review E 99, no. 2 (2019): 022423. https://doi.org/10.1103/PhysRevE.99.022423.
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2019 | Thesis | IST-REx-ID: 6071
Prizak, Roshan. Coevolution of Transcription Factors and Their Binding Sites in Sequence Space. IST Austria, 2019. https://doi.org/10.15479/at:ista:th6071.
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2018 | Journal Article | IST-REx-ID: 31   OA
Ferrari, Ulisse, Stephane Deny, Matthew J Chalk, Gasper Tkacik, Olivier Marre, and Thierry Mora. “Separating Intrinsic Interactions from Extrinsic Correlations in a Network of Sensory Neurons.” Physical Review E 98, no. 4 (2018). https://doi.org/10.1103/PhysRevE.98.042410.
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2018 | Journal Article | IST-REx-ID: 543   OA
Chalk, Matthew J, Olivier Marre, and Gasper Tkacik. “Toward a Unified Theory of Efficient, Predictive, and Sparse Coding.” PNAS 115, no. 1 (2018): 186–91. https://doi.org/10.1073/pnas.1711114115.
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2018 | Research Data | IST-REx-ID: 5587   OA
De Martino, Daniele, and Gasper Tkacik. Supporting Materials “STATISTICAL MECHANICS FOR METABOLIC NETWORKS IN STEADY-STATE GROWTH.” IST Austria, 2018. https://doi.org/10.15479/AT:ISTA:62.
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2018 | Journal Article | IST-REx-ID: 67
Igler, Claudia, Mato Lagator, Gasper Tkacik, Jonathan P Bollback, and Calin C Guet. “Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring.” Nature Ecology and Evolution 2, no. 10 (2018): 1633–43. https://doi.org/10.1038/s41559-018-0651-y.
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2018 | Journal Article | IST-REx-ID: 316   OA
Bodova, Katarina, Tadeas Priklopil, David Field, Nicholas H Barton, and Melinda Pickup. “Evolutionary Pathways for the Generation of New Self-Incompatibility Haplotypes in a Non-Self Recognition System.” Genetics 209, no. 3 (2018): 861–83. https://doi.org/10.1534/genetics.118.300748.
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2018 | Journal Article | IST-REx-ID: 607   OA
Bodova, Katarina, Jan Haskovec, and Peter Markowich. “Well Posedness and Maximum Entropy Approximation for the Dynamics of Quantitative Traits.” Physica D: Nonlinear Phenomena 376–377 (2018): 108–20. https://doi.org/10.1016/j.physd.2017.10.015.
View | DOI | Download (ext.) | arXiv
 
2018 | Journal Article | IST-REx-ID: 19   OA
Palmer, Adam, Remy P Chait, and Roy Kishony. “Nonoptimal Gene Expression Creates Latent Potential for Antibiotic Resistance.” Molecular Biology and Evolution 35, no. 11 (2018): 2669–84. https://doi.org/10.1093/molbev/msy163.
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2018 | Preprint | IST-REx-ID: 196   OA
Lang, Moritz, and Mikhail Shkolnikov. “Harmonic Dynamics of the Abelian Sandpile.” ArXiv. ArXiv, 2018.
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2018 | Journal Article | IST-REx-ID: 305
Misun, Patrick, Axel Birchler, Moritz Lang, Andreas Hierlemann, and Olivier Frey. “Fabrication and Operation of Microfluidic Hanging Drop Networks.” Methods in Molecular Biology 1771 (2018): 183–202. https://doi.org/10.1007/978-1-4939-7792-5_15.
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2018 | Journal Article | IST-REx-ID: 406   OA
Bod’Ová, Katarína, Gabriel Mitchell, Roy Harpaz, Elad Schneidman, and Gasper Tkacik. “Probabilistic Models of Individual and Collective Animal Behavior.” PLoS One 13, no. 3 (2018). https://doi.org/10.1371/journal.pone.0193049.
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2018 | Journal Article | IST-REx-ID: 292
Botella Soler, Vicent, Stephane Deny, Georg S Martius, Olivier Marre, and Gasper Tkacik. “Nonlinear Decoding of a Complex Movie from the Mammalian Retina.” PLoS Computational Biology 14, no. 5 (2018): e1006057. https://doi.org/10.1371/journal.pcbi.1006057.
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2018 | Research Data | IST-REx-ID: 5584   OA
Deny, Stephane, Olivier Marre, Vicente Botella-Soler, Georg S Martius, and Gasper Tkacik. Nonlinear Decoding of a Complex Movie from the Mammalian Retina. IST Austria, 2018. https://doi.org/10.15479/AT:ISTA:98.
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