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114 Publications

2015 | Journal Article | IST-REx-ID: 1701   OA
Tkacik G, Mora T, Marre O, Amodei D, Palmer S, Berry Ii M, Bialek W. 2015. Thermodynamics and signatures of criticality in a network of neurons. PNAS. 112(37), 11508–11513.
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2015 | Journal Article | IST-REx-ID: 1827   OA
Friedlander T, Mayo A, Tlusty T, Alon U. 2015. Evolution of bow-tie architectures in biology. PLoS Computational Biology. 11(3).
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2015 | Journal Article | IST-REx-ID: 1570   OA
Der R, Martius GS. 2015. Novel plasticity rule can explain the development of sensorimotor intelligence. PNAS. 112(45), E6224–E6232.
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2015 | Journal Article | IST-REx-ID: 1861
Ruess J, Lygeros J. 2015. Moment-based methods for parameter inference and experiment design for stochastic biochemical reaction networks. ACM Transactions on Modeling and Computer Simulation. 25(2).
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2015 | Journal Article | IST-REx-ID: 1885   OA
Tkacik G, Dubuis J, Petkova M, Gregor T. 2015. Positional information, positional error, and readout precision in morphogenesis: A mathematical framework. Genetics. 199(1), 39–59.
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2015 | Journal Article | IST-REx-ID: 1564   OA
Gilson M, Savin C, Zenke F. 2015. Editorial: Emergent neural computation from the interaction of different forms of plasticity. Frontiers in Computational Neuroscience. 9(11).
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2015 | Journal Article | IST-REx-ID: 1538   OA
Ruess J, Parise F, Milias Argeitis A, Khammash M, Lygeros J. 2015. Iterative experiment design guides the characterization of a light-inducible gene expression circuit. PNAS. 112(26), 8148–8153.
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2015 | Conference Paper | IST-REx-ID: 1658
Bogomolov S, Henzinger TA, Podelski A, Ruess J, Schilling C. 2015. Adaptive moment closure for parameter inference of biochemical reaction networks. 9308, 77–89.
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2015 | Journal Article | IST-REx-ID: 1576
Cepeda Humerez SA, Rieckh G, Tkacik G. 2015. Stochastic proofreading mechanism alleviates crosstalk in transcriptional regulation. Physical Review Letters. 115(24).
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2014 | Journal Article | IST-REx-ID: 3263   OA
Tkacik G, Ghosh A, Schneidman E, Segev R. 2014. Adaptation to changes in higher-order stimulus statistics in the salamander retina. PLoS One. 9(1).
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2014 | Journal Article | IST-REx-ID: 1896   OA
Kollár R, Bod’ová K, Nosek J, Tomáška Ľ. 2014. Mathematical model of alternative mechanism of telomere length maintenance. Physical Review E Statistical Nonlinear and Soft Matter Physics. 89(3).
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2014 | Journal Article | IST-REx-ID: 1928
Humplik J, Hill A, Nowak M. 2014. Evolutionary dynamics of infectious diseases in finite populations. Journal of Theoretical Biology. 360, 149–162.
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2014 | Journal Article | IST-REx-ID: 1909   OA
Ezard T, Prizak R, Hoyle R. 2014. The fitness costs of adaptation via phenotypic plasticity and maternal effects. Functional Ecology. 28(3), 693–701.
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2014 | Journal Article | IST-REx-ID: 2231   OA
Rieckh G, Tkacik G. 2014. Noise and information transmission in promoters with multiple internal states. Biophysical Journal. 106(5), 1194–1204.
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2014 | Journal Article | IST-REx-ID: 537   OA
Prizak R, Ezard T, Hoyle R. 2014. Fitness consequences of maternal and grandmaternal effects. Ecology and Evolution. 4(15), 3139–3145.
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2014 | Conference Paper | IST-REx-ID: 1708
Savin C, Denève S. 2014. Spatio-temporal representations of uncertainty in spiking neural networks. NIPS: Neural Information Processing Systems vol. 3. 2024–2032.
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2014 | Journal Article | IST-REx-ID: 1931   OA
Savin C, Triesch J. 2014. Emergence of task-dependent representations in working memory circuits. Frontiers in Computational Neuroscience. 8(MAY).
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2014 | Journal Article | IST-REx-ID: 1886   OA
Hermundstad A, Briguglio J, Conte M, Victor J, Balasubramanian V, Tkacik G. 2014. Variance predicts salience in central sensory processing. eLife. (November).
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2014 | Journal Article | IST-REx-ID: 2257
Tkacik G, Marre O, Amodei D, Schneidman E, Bialek W, Berry M. 2014. Searching for collective behavior in a large network of sensory neurons. PLoS Computational Biology. 10(1).
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2013 | Journal Article | IST-REx-ID: 2277   OA
Simmons K, Prentice J, Tkacik G, Homann J, Yee H, Palmer S, Nelson P, Balasubramanian V. 2013. Transformation of stimulus correlations by the retina. PLoS Computational Biology. 9(12), e1003344.
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2013 | Journal Article | IST-REx-ID: 2861
Botella Soler V, Oteo J, Ros J, Glendinning P. 2013. Lyapunov exponent and topological entropy plateaus in piecewise linear maps. Journal of Physics A: Mathematical and Theoretical. 46(12), 125101.
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2013 | Book Chapter | IST-REx-ID: 2413
Valderrama M, Botella Soler V, Le Van Quyen M. 2013. Neuronal oscillations scale up and scale down the brain dynamics . Multiscale Analysis and Nonlinear Dynamics: From Genes to the Brain. , Reviews of Nonlinear Dynamics and Complexity,
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2013 | Journal Article | IST-REx-ID: 2913   OA
Tkacik G, Granot Atedgi E, Segev R, Schneidman E. 2013. Retinal metric: a stimulus distance measure derived from population neural responses. Physical Review Letters. 110(5).
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2013 | Journal Article | IST-REx-ID: 2850   OA
Tkacik G, Marre O, Mora T, Amodei D, Berry M, Bialek W. 2013. The simplest maximum entropy model for collective behavior in a neural network. Journal of Statistical Mechanics Theory and Experiment. 2013(3).
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2013 | Journal Article | IST-REx-ID: 2863   OA
Granot Atedgi E, Tkacik G, Segev R, Schneidman E. 2013. Stimulus-dependent maximum entropy models of neural population codes. PLoS Computational Biology. 9(3).
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2013 | Journal Article | IST-REx-ID: 2914   OA
Stephens G, Mora T, Tkacik G, Bialek W. 2013. Statistical thermodynamics of natural images. Physical Review Letters. 110(1), 018701.
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2013 | Journal Article | IST-REx-ID: 2851
Berry M, Tkacik G, Dubuis J, Marre O, Da Silveira R. 2013. A simple method for estimating the entropy of neural activity. Journal of Statistical Mechanics Theory and Experiment. 2013(3).
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2013 | Journal Article | IST-REx-ID: 2818   OA
Rajan K, Marre O, Tkacik G. 2013. Learning quadratic receptive fields from neural responses to natural stimuli. Neural Computation. 25(7), 1661–1692.
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2013 | Journal Article | IST-REx-ID: 3261   OA
Dubuis J, Tkacik G, Wieschaus E, Gregor T, Bialek W. 2013. Positional information, in bits. PNAS. 110(41), 16301–16308.
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2013 | Journal Article | IST-REx-ID: 499
Wakamoto Y, Dhar N, Chait RP, Schneider K, Signorino Gelo F, Leibler S, Mckinney J. 2013. Dynamic persistence of antibiotic-stressed mycobacteria. Science. 339(6115), 91–95.
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2012 | Journal Article | IST-REx-ID: 3262   OA
Tkacik G, Walczak A, Bialek W. 2012. Optimizing information flow in small genetic networks. III. A self-interacting gene. Physical Review E statistical nonlinear and soft matter physics . 85(4).
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2012 | Journal Article | IST-REx-ID: 3274
Rieckh G, Kreuzer W, Waubke H, Balazs P. 2012. A 2.5D-Fourier-BEM model for vibrations in a tunnel running through layered anisotropic soil. Engineering Analysis with Boundary Elements. 36(6), 960–967.
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2011 | Journal Article | IST-REx-ID: 3384   OA
Tkacik G, Garrigan P, Ratliff C, Milcinski G, Klein J, Seyfarth L, Sterling P, Brainard D, Balasubramanian V. 2011. Natural images from the birthplace of the human eye. PLoS One. 6(6).
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2011 | Journal Article | IST-REx-ID: 3374   OA
Tkacik G, Walczak A. 2011. Information transmission in genetic regulatory networks a review. Journal of Physics: Condensed Matter. 23(15).
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