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128 Publications

2019 | Journal Article | IST-REx-ID: 6900   OA
S. A. Cepeda Humerez, J. Ruess, and G. Tkačik, “Estimating information in time-varying signals,” PLoS computational biology, vol. 15, no. 9, p. e1007290, 2019.
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2019 | Journal Article | IST-REx-ID: 6090   OA
M. Carballo-Pacheco et al., “Receptor crosstalk improves concentration sensing of multiple ligands,” Physical Review E, vol. 99, no. 2, 2019.
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2019 | Thesis | IST-REx-ID: 6071
R. Prizak, Coevolution of transcription factors and their binding sites in sequence space. IST Austria, 2019.
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2019 | Conference Paper | IST-REx-ID: 7606   OA
M. Hledik, T. R. Sokolowski, and G. Tkačik, “A tight upper bound on mutual information,” in IEEE Information Theory Workshop, ITW 2019, Visby, Sweden, 2019, p. 8989292.
View | DOI | Download (ext.) | arXiv
 
2018 | Journal Article | IST-REx-ID: 543   OA
M. J. Chalk, O. Marre, and G. Tkacik, “Toward a unified theory of efficient, predictive, and sparse coding,” PNAS, vol. 115, no. 1, pp. 186–191, 2018.
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2018 | Research Data | IST-REx-ID: 5587   OA
D. De Martino and G. Tkacik, Supporting materials “STATISTICAL MECHANICS FOR METABOLIC NETWORKS IN STEADY-STATE GROWTH.” IST Austria, 2018.
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2018 | Journal Article | IST-REx-ID: 31   OA
U. Ferrari, S. Deny, M. J. Chalk, G. Tkacik, O. Marre, and T. Mora, “Separating intrinsic interactions from extrinsic correlations in a network of sensory neurons,” Physical Review E, vol. 98, no. 4, p. 042410, 2018.
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2018 | Journal Article | IST-REx-ID: 67   OA
C. Igler, M. Lagator, G. Tkacik, J. P. Bollback, and C. C. Guet, “Evolutionary potential of transcription factors for gene regulatory rewiring,” Nature Ecology and Evolution, vol. 2, no. 10, pp. 1633–1643, 2018.
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2018 | Journal Article | IST-REx-ID: 607   OA
K. Bodova, J. Haskovec, and P. Markowich, “Well posedness and maximum entropy approximation for the dynamics of quantitative traits,” Physica D: Nonlinear Phenomena, vol. 376–377, pp. 108–120, 2018.
View | DOI | Download (ext.) | arXiv
 
2018 | Journal Article | IST-REx-ID: 316   OA
K. Bodova, T. Priklopil, D. Field, N. H. Barton, and M. Pickup, “Evolutionary pathways for the generation of new self-incompatibility haplotypes in a non-self recognition system,” Genetics, vol. 209, no. 3, pp. 861–883, 2018.
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2018 | Journal Article | IST-REx-ID: 19   OA
A. Palmer, R. P. Chait, and R. Kishony, “Nonoptimal gene expression creates latent potential for antibiotic resistance,” Molecular Biology and Evolution, vol. 35, no. 11, pp. 2669–2684, 2018.
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2018 | Preprint | IST-REx-ID: 196   OA
M. Lang and M. Shkolnikov, “Harmonic dynamics of the Abelian sandpile,” ArXiv. ArXiv, 2018.
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2018 | Journal Article | IST-REx-ID: 305
P. Misun, A. Birchler, M. Lang, A. Hierlemann, and O. Frey, “Fabrication and operation of microfluidic hanging drop networks,” Methods in Molecular Biology, vol. 1771, pp. 183–202, 2018.
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2018 | Journal Article | IST-REx-ID: 406   OA
K. Bod’Ová, G. Mitchell, R. Harpaz, E. Schneidman, and G. Tkacik, “Probabilistic models of individual and collective animal behavior,” PLoS One, vol. 13, no. 3, 2018.
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2018 | Journal Article | IST-REx-ID: 292   OA
V. Botella Soler, S. Deny, G. S. Martius, O. Marre, and G. Tkacik, “Nonlinear decoding of a complex movie from the mammalian retina,” PLoS Computational Biology, vol. 14, no. 5, p. e1006057, 2018.
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2018 | Research Data | IST-REx-ID: 5584
S. Deny, O. Marre, V. Botella-Soler, G. S. Martius, and G. Tkacik, Nonlinear decoding of a complex movie from the mammalian retina. IST Austria, 2018.
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2018 | Journal Article | IST-REx-ID: 306   OA
A. De Martino and D. De Martino, “An introduction to the maximum entropy approach and its application to inference problems in biology,” Heliyon, vol. 4, no. 4, 2018.
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2018 | Journal Article | IST-REx-ID: 457
M. Pleska, M. Lang, D. Refardt, B. Levin, and C. C. Guet, “Phage-host population dynamics promotes prophage acquisition in bacteria with innate immunity,” Nature Ecology and Evolution, vol. 2, no. 2, pp. 359–366, 2018.
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2018 | Journal Article | IST-REx-ID: 281   OA
A. Granados, J. Pietsch, S. A. Cepeda Humerez, I. Farquhar, G. Tkacik, and P. Swain, “Distributed and dynamic intracellular organization of extracellular information,” PNAS, vol. 115, no. 23, pp. 6088–6093, 2018.
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2018 | Journal Article | IST-REx-ID: 161
D. De Martino, A. A. Mc, T. Bergmiller, C. C. Guet, and G. Tkacik, “Statistical mechanics for metabolic networks during steady state growth,” Nature Communications, vol. 9, no. 1, 2018.
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