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132 Publications

2015 | Journal Article | IST-REx-ID: 1885 | OA
Tkacik, Gasper, Julien Dubuis, Mariela Petkova, and Thomas Gregor. “Positional Information, Positional Error, and Readout Precision in Morphogenesis: A Mathematical Framework.” Genetics 199, no. 1 (2015): 39–59. https://doi.org/10.1534/genetics.114.171850.
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2015 | Journal Article | IST-REx-ID: 1940 | OA
Sokolowski, Thomas R, and Gasper Tkacik. “Optimizing Information Flow in Small Genetic Networks. IV. Spatial Coupling.” Physical Review E Statistical Nonlinear and Soft Matter Physics 91, no. 6 (2015). https://doi.org/10.1103/PhysRevE.91.062710.
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2015 | Journal Article | IST-REx-ID: 1538 | OA
Ruess, Jakob, Francesca Parise, Andreas Milias Argeitis, Mustafa Khammash, and John Lygeros. “Iterative Experiment Design Guides the Characterization of a Light-Inducible Gene Expression Circuit.” PNAS 112, no. 26 (2015): 8148–53. https://doi.org/10.1073/pnas.1423947112.
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2015 | Journal Article | IST-REx-ID: 1539 | OA
Ruess, Jakob. “Minimal Moment Equations for Stochastic Models of Biochemical Reaction Networks with Partially Finite State Space.” Journal of Chemical Physics 143, no. 24 (2015). https://doi.org/10.1063/1.4937937.
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2015 | Journal Article | IST-REx-ID: 1564 | OA
Gilson, Matthieu, Cristina Savin, and Friedemann Zenke. “Editorial: Emergent Neural Computation from the Interaction of Different Forms of Plasticity.” Frontiers in Computational Neuroscience 9, no. 11 (2015). https://doi.org/10.3389/fncom.2015.00145.
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2015 | Journal Article | IST-REx-ID: 1570 | OA
Der, Ralf, and Georg S Martius. “Novel Plasticity Rule Can Explain the Development of Sensorimotor Intelligence.” PNAS 112, no. 45 (2015): E6224–32. https://doi.org/10.1073/pnas.1508400112.
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2015 | Journal Article | IST-REx-ID: 1576 | OA
Cepeda Humerez, Sarah A, Georg Rieckh, and Gasper Tkacik. “Stochastic Proofreading Mechanism Alleviates Crosstalk in Transcriptional Regulation.” Physical Review Letters 115, no. 24 (2015). https://doi.org/10.1103/PhysRevLett.115.248101.
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2014 | Conference Paper | IST-REx-ID: 1708
Savin, Cristina, and Sophie Denève. “Spatio-Temporal Representations of Uncertainty in Spiking Neural Networks,” 3:2024–32. Neural Information Processing Systems, 2014.
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2014 | Journal Article | IST-REx-ID: 1886 | OA
Hermundstad, Ann, John Briguglio, Mary Conte, Jonathan Victor, Vijay Balasubramanian, and Gašper Tkačik. “Variance Predicts Salience in Central Sensory Processing.” ELife, no. November (2014). https://doi.org/10.7554/eLife.03722.
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2014 | Journal Article | IST-REx-ID: 1896 | OA
Kollár, Richard, Katarína Bod’ová, Jozef Nosek, and Ľubomír Tomáška. “Mathematical Model of Alternative Mechanism of Telomere Length Maintenance.” Physical Review E Statistical Nonlinear and Soft Matter Physics 89, no. 3 (2014). https://doi.org/10.1103/PhysRevE.89.032701.
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2014 | Journal Article | IST-REx-ID: 1909 | OA
Ezard, Thomas, Roshan Prizak, and Rebecca Hoyle. “The Fitness Costs of Adaptation via Phenotypic Plasticity and Maternal Effects.” Functional Ecology 28, no. 3 (2014): 693–701. https://doi.org/10.1111/1365-2435.12207.
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2014 | Journal Article | IST-REx-ID: 1928
Humplik, Jan, Alison Hill, and Martin Nowak. “Evolutionary Dynamics of Infectious Diseases in Finite Populations.” Journal of Theoretical Biology 360 (2014): 149–62. https://doi.org/10.1016/j.jtbi.2014.06.039.
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2014 | Journal Article | IST-REx-ID: 1931 | OA
Savin, Cristina, and Jochen Triesch. “Emergence of Task-Dependent Representations in Working Memory Circuits.” Frontiers in Computational Neuroscience 8, no. MAY (2014). https://doi.org/10.3389/fncom.2014.00057.
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2014 | Journal Article | IST-REx-ID: 2231 | OA
Rieckh, Georg, and Gasper Tkacik. “Noise and Information Transmission in Promoters with Multiple Internal States.” Biophysical Journal 106, no. 5 (2014): 1194–1204. https://doi.org/10.1016/j.bpj.2014.01.014.
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2014 | Journal Article | IST-REx-ID: 2257 | OA
Tkačik, Gašper, Olivier Marre, Dario Amodei, Elad Schneidman, William Bialek, and Michael Berry. “Searching for Collective Behavior in a Large Network of Sensory Neurons.” PLoS Computational Biology 10, no. 1 (2014). https://doi.org/10.1371/journal.pcbi.1003408.
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2014 | Journal Article | IST-REx-ID: 537 | OA
Prizak, Roshan, Thomas Ezard, and Rebecca Hoyle. “Fitness Consequences of Maternal and Grandmaternal Effects.” Ecology and Evolution 4, no. 15 (2014): 3139–45. https://doi.org/10.1002/ece3.1150.
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2014 | Journal Article | IST-REx-ID: 3263 | OA
Tkačik, Gašper, Anandamohan Ghosh, Elad Schneidman, and Ronen Segev. “Adaptation to Changes in Higher-Order Stimulus Statistics in the Salamander Retina.” PLoS One 9, no. 1 (2014). https://doi.org/10.1371/journal.pone.0085841.
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2013 | Journal Article | IST-REx-ID: 2277 | OA
Simmons, Kristina, Jason Prentice, Gašper Tkačik, Jan Homann, Heather Yee, Stephanie Palmer, Philip Nelson, and Vijay Balasubramanian. “Transformation of Stimulus Correlations by the Retina.” PLoS Computational Biology 9, no. 12 (2013). https://doi.org/10.1371/journal.pcbi.1003344.
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2013 | Book Chapter | IST-REx-ID: 2413
Valderrama, Mario, Vicente Botella Soler, and Michel Le Van Quyen. “Neuronal Oscillations Scale up and Scale down the Brain Dynamics .” In Multiscale Analysis and Nonlinear Dynamics: From Genes to the Brain, edited by Misha Meyer and Z. Pesenson. Wiley-VCH, 2013. https://doi.org/10.1002/9783527671632.ch08.
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2013 | Journal Article | IST-REx-ID: 2818 | OA
Rajan, Kanaka, Olivier Marre, and Gasper Tkacik. “Learning Quadratic Receptive Fields from Neural Responses to Natural Stimuli.” Neural Computation 25, no. 7 (2013): 1661–92. https://doi.org/10.1162/NECO_a_00463.
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