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134 Publications

2015 | Journal Article | IST-REx-ID: 1666 | OA
M. Tugrul, T. Paixao, N. H. Barton, and G. Tkačik, “Dynamics of transcription factor binding site evolution,” PLoS Genetics, vol. 11, no. 11, 2015.
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2015 | Journal Article | IST-REx-ID: 1697 | OA
O. Marre, V. Botella Soler, K. Simmons, T. Mora, G. Tkačik, and M. Berry, “High accuracy decoding of dynamical motion from a large retinal population,” PLoS Computational Biology, vol. 11, no. 7, 2015.
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2015 | Journal Article | IST-REx-ID: 1701 | OA
G. Tkacik et al., “Thermodynamics and signatures of criticality in a network of neurons,” PNAS, vol. 112, no. 37, pp. 11508–11513, 2015.
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2015 | Journal Article | IST-REx-ID: 1827 | OA
T. Friedlander, A. Mayo, T. Tlusty, and U. Alon, “Evolution of bow-tie architectures in biology,” PLoS Computational Biology, vol. 11, no. 3, 2015.
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2015 | Journal Article | IST-REx-ID: 1861
J. Ruess and J. Lygeros, “Moment-based methods for parameter inference and experiment design for stochastic biochemical reaction networks,” ACM Transactions on Modeling and Computer Simulation, vol. 25, no. 2, 2015.
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2015 | Journal Article | IST-REx-ID: 1885 | OA
G. Tkacik, J. Dubuis, M. Petkova, and T. Gregor, “Positional information, positional error, and readout precision in morphogenesis: A mathematical framework,” Genetics, vol. 199, no. 1, pp. 39–59, 2015.
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2015 | Journal Article | IST-REx-ID: 1940 | OA
T. R. Sokolowski and G. Tkacik, “Optimizing information flow in small genetic networks. IV. Spatial coupling,” Physical Review E Statistical Nonlinear and Soft Matter Physics, vol. 91, no. 6, 2015.
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2015 | Journal Article | IST-REx-ID: 1538 | OA
J. Ruess, F. Parise, A. Milias Argeitis, M. Khammash, and J. Lygeros, “Iterative experiment design guides the characterization of a light-inducible gene expression circuit,” PNAS, vol. 112, no. 26, pp. 8148–8153, 2015.
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2015 | Journal Article | IST-REx-ID: 1539 | OA
J. Ruess, “Minimal moment equations for stochastic models of biochemical reaction networks with partially finite state space,” Journal of Chemical Physics, vol. 143, no. 24, 2015.
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2014 | Journal Article | IST-REx-ID: 2231 | OA
G. Rieckh and G. Tkacik, “Noise and information transmission in promoters with multiple internal states,” Biophysical Journal, vol. 106, no. 5, pp. 1194–1204, 2014.
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