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127 Publications

2016 | Journal Article | IST-REx-ID: 1420 | OA
K. Bod’ová, G. Tkacik, and N. H. Barton, “A general approximation for the dynamics of quantitative traits,” Genetics, vol. 202, no. 4, pp. 1523–1548, 2016.
View | DOI | Download Preprint (ext.) | arXiv
 
2016 | Journal Article | IST-REx-ID: 1485 | OA
D. De Martino, “Genome-scale estimate of the metabolic turnover of E. Coli from the energy balance analysis,” Physical Biology, vol. 13, no. 1, 2016.
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2016 | Conference Paper | IST-REx-ID: 1082 | OA
M. J. Chalk, O. Marre, and G. Tkacik, “Relevant sparse codes with variational information bottleneck,” presented at the NIPS: Neural Information Processing Systems, Barcelona, Spain, 2016, vol. 29, pp. 1965–1973.
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2016 | Conference Paper | IST-REx-ID: 1105
C. Savin and G. Tkacik, “Estimating nonlinear neural response functions using GP priors and Kronecker methods,” presented at the NIPS: Neural Information Processing Systems, Barcelona; Spain, 2016, vol. 29, pp. 3610–3618.
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2016 | Journal Article | IST-REx-ID: 1148
C. Schilling, S. Bogomolov, T. A. Henzinger, A. Podelski, and J. Ruess, “Adaptive moment closure for parameter inference of biochemical reaction networks,” Biosystems, vol. 149, pp. 15–25, 2016.
View | Files available | DOI
 
2016 | Journal Article | IST-REx-ID: 1170
M. Lang and J. Stelling, “Modular parameter identification of biomolecular networks,” SIAM Journal on Scientific Computing, vol. 38, no. 6, pp. B988–B1008, 2016.
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2016 | Journal Article | IST-REx-ID: 1171
G. Tkacik, “Understanding regulatory networks requires more than computing a multitude of graph statistics: Comment on "Drivers of structural features in gene regulatory networks: From biophysical constraints to biological function" by O. C. Martin et al.,” Physics of Life Reviews, vol. 17, pp. 166–167, 2016.
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2016 | Thesis | IST-REx-ID: 1128 | OA
G. Rieckh, Studying the complexities of transcriptional regulation. IST Austria, 2016.
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2015 | Journal Article | IST-REx-ID: 1564 | OA
M. Gilson, C. Savin, and F. Zenke, “Editorial: Emergent neural computation from the interaction of different forms of plasticity,” Frontiers in Computational Neuroscience, vol. 9, no. 11, 2015.
View | Files available | DOI
 
2015 | Journal Article | IST-REx-ID: 1570 | OA
R. Der and G. S. Martius, “Novel plasticity rule can explain the development of sensorimotor intelligence,” PNAS, vol. 112, no. 45, pp. E6224–E6232, 2015.
View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
2015 | Journal Article | IST-REx-ID: 1576 | OA
S. A. Cepeda Humerez, G. Rieckh, and G. Tkacik, “Stochastic proofreading mechanism alleviates crosstalk in transcriptional regulation,” Physical Review Letters, vol. 115, no. 24, 2015.
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2015 | Journal Article | IST-REx-ID: 1655 | OA
G. S. Martius and E. Olbrich, “Quantifying emergent behavior of autonomous robots,” Entropy, vol. 17, no. 10, pp. 7266–7297, 2015.
View | Files available | DOI
 
2015 | Conference Paper | IST-REx-ID: 1658
S. Bogomolov, T. A. Henzinger, A. Podelski, J. Ruess, and C. Schilling, “Adaptive moment closure for parameter inference of biochemical reaction networks,” vol. 9308. Springer, pp. 77–89, 2015.
View | Files available | DOI
 
2015 | Journal Article | IST-REx-ID: 1666 | OA
M. Tugrul, T. Paixao, N. H. Barton, and G. Tkačik, “Dynamics of transcription factor binding site evolution,” PLoS Genetics, vol. 11, no. 11, 2015.
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2015 | Journal Article | IST-REx-ID: 1697 | OA
O. Marre, V. Botella Soler, K. Simmons, T. Mora, G. Tkačik, and M. Berry, “High accuracy decoding of dynamical motion from a large retinal population,” PLoS Computational Biology, vol. 11, no. 7, 2015.
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2015 | Journal Article | IST-REx-ID: 1701 | OA
G. Tkacik et al., “Thermodynamics and signatures of criticality in a network of neurons,” PNAS, vol. 112, no. 37, pp. 11508–11513, 2015.
View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
2015 | Journal Article | IST-REx-ID: 1827 | OA
T. Friedlander, A. Mayo, T. Tlusty, and U. Alon, “Evolution of bow-tie architectures in biology,” PLoS Computational Biology, vol. 11, no. 3, 2015.
View | Files available | DOI
 
2015 | Journal Article | IST-REx-ID: 1861
J. Ruess and J. Lygeros, “Moment-based methods for parameter inference and experiment design for stochastic biochemical reaction networks,” ACM Transactions on Modeling and Computer Simulation, vol. 25, no. 2, 2015.
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2015 | Journal Article | IST-REx-ID: 1885 | OA
G. Tkacik, J. Dubuis, M. Petkova, and T. Gregor, “Positional information, positional error, and readout precision in morphogenesis: A mathematical framework,” Genetics, vol. 199, no. 1, pp. 39–59, 2015.
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2015 | Journal Article | IST-REx-ID: 1940 | OA
T. R. Sokolowski and G. Tkacik, “Optimizing information flow in small genetic networks. IV. Spatial coupling,” Physical Review E Statistical Nonlinear and Soft Matter Physics, vol. 91, no. 6, 2015.
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