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127 Publications

2016 | Journal Article | IST-REx-ID: 1420 | OA
Bod’ová, Katarína, Gasper Tkacik, and Nicholas H Barton. “A General Approximation for the Dynamics of Quantitative Traits.” Genetics 202, no. 4 (2016): 1523–48. https://doi.org/10.1534/genetics.115.184127.
View | DOI | Download Preprint (ext.) | arXiv
 
2016 | Journal Article | IST-REx-ID: 1485 | OA
De Martino, Daniele. “Genome-Scale Estimate of the Metabolic Turnover of E. Coli from the Energy Balance Analysis.” Physical Biology 13, no. 1 (2016). https://doi.org/10.1088/1478-3975/13/1/016003.
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2016 | Conference Paper | IST-REx-ID: 1082 | OA
Chalk, Matthew J, Olivier Marre, and Gasper Tkacik. “Relevant Sparse Codes with Variational Information Bottleneck,” 29:1965–73. Neural Information Processing Systems, 2016.
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2016 | Conference Paper | IST-REx-ID: 1105
Savin, Cristina, and Gasper Tkacik. “Estimating Nonlinear Neural Response Functions Using GP Priors and Kronecker Methods,” 29:3610–18. Neural Information Processing Systems, 2016.
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2016 | Journal Article | IST-REx-ID: 1148
Schilling, Christian, Sergiy Bogomolov, Thomas A Henzinger, Andreas Podelski, and Jakob Ruess. “Adaptive Moment Closure for Parameter Inference of Biochemical Reaction Networks.” Biosystems 149 (2016): 15–25. https://doi.org/10.1016/j.biosystems.2016.07.005.
View | Files available | DOI
 
2016 | Journal Article | IST-REx-ID: 1170
Lang, Moritz, and Jörg Stelling. “Modular Parameter Identification of Biomolecular Networks.” SIAM Journal on Scientific Computing 38, no. 6 (2016): B988–1008. https://doi.org/10.1137/15M103306X.
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2016 | Journal Article | IST-REx-ID: 1171
Tkacik, Gasper. “Understanding Regulatory Networks Requires More than Computing a Multitude of Graph Statistics: Comment on "Drivers of Structural Features in Gene Regulatory Networks: From Biophysical Constraints to Biological Function" by O. C. Martin et Al.” Physics of Life Reviews 17 (2016): 166–67. https://doi.org/10.1016/j.plrev.2016.06.005.
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2016 | Thesis | IST-REx-ID: 1128 | OA
Rieckh, Georg. Studying the Complexities of Transcriptional Regulation. IST Austria, 2016.
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2015 | Journal Article | IST-REx-ID: 1564 | OA
Gilson, Matthieu, Cristina Savin, and Friedemann Zenke. “Editorial: Emergent Neural Computation from the Interaction of Different Forms of Plasticity.” Frontiers in Computational Neuroscience 9, no. 11 (2015). https://doi.org/10.3389/fncom.2015.00145.
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2015 | Journal Article | IST-REx-ID: 1570 | OA
Der, Ralf, and Georg S Martius. “Novel Plasticity Rule Can Explain the Development of Sensorimotor Intelligence.” PNAS 112, no. 45 (2015): E6224–32. https://doi.org/10.1073/pnas.1508400112.
View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
2015 | Journal Article | IST-REx-ID: 1576 | OA
Cepeda Humerez, Sarah A, Georg Rieckh, and Gasper Tkacik. “Stochastic Proofreading Mechanism Alleviates Crosstalk in Transcriptional Regulation.” Physical Review Letters 115, no. 24 (2015). https://doi.org/10.1103/PhysRevLett.115.248101.
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2015 | Journal Article | IST-REx-ID: 1655 | OA
Martius, Georg S, and Eckehard Olbrich. “Quantifying Emergent Behavior of Autonomous Robots.” Entropy 17, no. 10 (2015): 7266–97. https://doi.org/10.3390/e17107266.
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2015 | Conference Paper | IST-REx-ID: 1658
Bogomolov, Sergiy, Thomas A Henzinger, Andreas Podelski, Jakob Ruess, and Christian Schilling. “Adaptive Moment Closure for Parameter Inference of Biochemical Reaction Networks.” Lecture Notes in Computer Science. Springer, 2015. https://doi.org/10.1007/978-3-319-23401-4_8.
View | Files available | DOI
 
2015 | Journal Article | IST-REx-ID: 1666 | OA
Tugrul, Murat, Tiago Paixao, Nicholas H Barton, and Gašper Tkačik. “Dynamics of Transcription Factor Binding Site Evolution.” PLoS Genetics 11, no. 11 (2015). https://doi.org/10.1371/journal.pgen.1005639.
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2015 | Journal Article | IST-REx-ID: 1697 | OA
Marre, Olivier, Vicente Botella Soler, Kristina Simmons, Thierry Mora, Gašper Tkačik, and Michael Berry. “High Accuracy Decoding of Dynamical Motion from a Large Retinal Population.” PLoS Computational Biology 11, no. 7 (2015). https://doi.org/10.1371/journal.pcbi.1004304.
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2015 | Journal Article | IST-REx-ID: 1701 | OA
Tkacik, Gasper, Thierry Mora, Olivier Marre, Dario Amodei, Stephanie Palmer, Michael Berry Ii, and William Bialek. “Thermodynamics and Signatures of Criticality in a Network of Neurons.” PNAS 112, no. 37 (2015): 11508–13. https://doi.org/10.1073/pnas.1514188112.
View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
2015 | Journal Article | IST-REx-ID: 1827 | OA
Friedlander, Tamar, Avraham Mayo, Tsvi Tlusty, and Uri Alon. “Evolution of Bow-Tie Architectures in Biology.” PLoS Computational Biology 11, no. 3 (2015). https://doi.org/10.1371/journal.pcbi.1004055.
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2015 | Journal Article | IST-REx-ID: 1861
Ruess, Jakob, and John Lygeros. “Moment-Based Methods for Parameter Inference and Experiment Design for Stochastic Biochemical Reaction Networks.” ACM Transactions on Modeling and Computer Simulation 25, no. 2 (2015). https://doi.org/10.1145/2688906.
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2015 | Journal Article | IST-REx-ID: 1885 | OA
Tkacik, Gasper, Julien Dubuis, Mariela Petkova, and Thomas Gregor. “Positional Information, Positional Error, and Readout Precision in Morphogenesis: A Mathematical Framework.” Genetics 199, no. 1 (2015): 39–59. https://doi.org/10.1534/genetics.114.171850.
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2015 | Journal Article | IST-REx-ID: 1940 | OA
Sokolowski, Thomas R, and Gasper Tkacik. “Optimizing Information Flow in Small Genetic Networks. IV. Spatial Coupling.” Physical Review E Statistical Nonlinear and Soft Matter Physics 91, no. 6 (2015). https://doi.org/10.1103/PhysRevE.91.062710.
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