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163 Publications

2022 | Journal Article | IST-REx-ID: 10736 | OA
Lagator M, Sarikas S, Steinrueck M, Toledo-Aparicio D, Bollback JP, Guet CC, Tkačik G. 2022. Predicting bacterial promoter function and evolution from random sequences. eLife. 11, e64543.
View | Files available | DOI | PubMed | Europe PMC
 
2022 | Preprint | IST-REx-ID: 10821 | OA
Lombardi F, Herrmann HJ, Parrino L, Plenz D, Scarpetta S, Vaudano AE, de Arcangelis L, Shriki O. 2022. Alpha rhythm induces attenuation-amplification dynamics in neural activity cascades. bioRxiv, 10.1101/2022.03.03.482657.
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2022 | Journal Article | IST-REx-ID: 11638 | OA
Ngampruetikorn V, Sachdeva V, Torrence J, Humplik J, Schwab DJ, Palmer SE. 2022. Inferring couplings in networks across order-disorder phase transitions. Physical Review Research. 4(2), 023240.
View | Files available | DOI | arXiv
 
2022 | Journal Article | IST-REx-ID: 10530 | OA
Zisis T, Brückner D, Brandstätter T, Siow WX, d’Alessandro J, Vollmar AM, Broedersz CP, Zahler S. 2022. Disentangling cadherin-mediated cell-cell interactions in collective cancer cell migration. Biophysical Journal. 121(1), P44-60.
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2022 | Journal Article | IST-REx-ID: 12081 | OA
Hledik M, Barton NH, Tkačik G. 2022. Accumulation and maintenance of information in evolution. PNAS. 119(36), e2123152119.
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2021 | Journal Article | IST-REx-ID: 7463 | OA
Lombardi F, Shriki O, Herrmann HJ, de Arcangelis L. 2021. Long-range temporal correlations in the broadband resting state activity of the human brain revealed by neuronal avalanches. Neurocomputing. 461, 657–666.
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2021 | Journal Article | IST-REx-ID: 7553 | OA
Mlynarski WF, Hledik M, Sokolowski TR, Tkačik G. 2021. Statistical analysis and optimality of neural systems. Neuron. 109(7), 1227–1241.e5.
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2021 | Preprint | IST-REx-ID: 10579 | OA
Kavcic B, Tkačik G. On token-driven totally asymmetric simple exclusion process. arXiv, 2112.13558.
View | Download Preprint (ext.) | arXiv
 
2021 | Preprint | IST-REx-ID: 10912 | OA
Lombardi F, Pepic S, Shriki O, Tkačik G, De Martino D. Quantifying the coexistence of neuronal oscillations and avalanches. 10.48550/ARXIV.2108.06686.
View | DOI | Download Preprint (ext.) | arXiv
 
2021 | Journal Article | IST-REx-ID: 8997 | OA
Kavcic B, Tkačik G, Bollenbach MT. 2021. Minimal biophysical model of combined antibiotic action. PLOS Computational Biology. 17, e1008529.
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2021 | Journal Article | IST-REx-ID: 9283 | OA
Nagy-Staron AA, Tomasek K, Caruso Carter C, Sonnleitner E, Kavcic B, Paixão T, Guet CC. 2021. Local genetic context shapes the function of a gene regulatory network. eLife. 10, e65993.
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2021 | Journal Article | IST-REx-ID: 9362 | OA
Chalk MJ, Tkačik G, Marre O. 2021. Inferring the function performed by a recurrent neural network. PLoS ONE. 16(4 April), e0248940.
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2021 | Journal Article | IST-REx-ID: 9439 | OA
Mlynarski WF, Hermundstad AM. 2021. Efficient and adaptive sensory codes. Nature Neuroscience. 24, 998–1009.
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2021 | Journal Article | IST-REx-ID: 9828 | OA
Gabrielaitis M. 2021. Fast and accurate amplitude demodulation of wideband signals. IEEE Transactions on Signal Processing. 69, 4039–4054.
View | DOI | Download Preprint (ext.) | arXiv
 
2021 | Journal Article | IST-REx-ID: 9226 | OA
Tkačik G, Gregor T. 2021. The many bits of positional information. Development. 148(2), dev176065.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
2021 | Journal Article | IST-REx-ID: 10535 | OA
Bodova K, Szep E, Barton NH. 2021. Dynamic maximum entropy provides accurate approximation of structured population dynamics. PLoS Computational Biology. 17(12), e1009661.
View | Files available | DOI | PubMed | Europe PMC | arXiv
 
2021 | Preprint | IST-REx-ID: 10077 | OA
Nardin M, Csicsvari JL, Tkačik G, Savin C. The structure of hippocampal CA1 interactions optimizes spatial coding across experience. bioRxiv, 10.1101/2021.09.28.460602.
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2021 | Journal Article | IST-REx-ID: 9822 | OA
Zisis T, Schwarz J, Balles M, Kretschmer M, Nemethova M, Chait RP, Hauschild R, Lange J, Guet CC, Sixt MK, Zahler S. 2021. Sequential and switchable patterning for studying cellular processes under spatiotemporal control. ACS Applied Materials and Interfaces. 13(30), 35545–35560.
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2020 | Journal Article | IST-REx-ID: 8084 | OA
Lombardi F, Gómez-Extremera M, Bernaola-Galván P, Vetrivelan R, Saper CB, Scammell TE, Ivanov PC. 2020. Critical dynamics and coupling in bursts of cortical rhythms indicate non-homeostatic mechanism for sleep-stage transitions and dual role of VLPO neurons in both sleep and wake. Journal of Neuroscience. 40(1), 171–190.
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2020 | Journal Article | IST-REx-ID: 8105 | OA
Lombardi F, Wang JWJL, Zhang X, Ivanov PC. 2020. Power-law correlations and coupling of active and quiet states underlie a class of complex systems with self-organization at criticality. EPJ Web of Conferences. 230, 00005.
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