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123 Publications

2020 | Journal Article | IST-REx-ID: 7652
Gene amplification as a form of population-level gene expression regulation
I. Tomanek, R. Grah, M. Lagator, A.M.C. Andersson, J.P. Bollback, G. Tkačik, C.C. Guet, Nature Ecology & Evolution 4 (2020) 612–625.
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2020 | Preprint | IST-REx-ID: 7463   OA View | Download (ext.)
 
2020 | Journal Article | IST-REx-ID: 7569   OA
The relation between crosstalk and gene regulation form revisited
R. Grah, T. Friedlander, PLOS Computational Biology 16 (2020) e1007642.
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2020 | Journal Article | IST-REx-ID: 7490   OA
Evolutionarily unique mechanistic framework of clathrin-mediated endocytosis in plants
M. Narasimhan, A.J. Johnson, R. Prizak, W. Kaufmann, S. Tan, B.E. Casillas Perez, J. Friml, ELife 9 (2020) e52067.
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2020 | Preprint | IST-REx-ID: 7553   OA
Statistical analysis and optimality of biological systems
W.F. Mlynarski, M. Hledik, T.R. Sokolowski, G. Tkačik, BioRxiv (n.d.).
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2020 | Preprint | IST-REx-ID: 7673   OA
A minimal biophysical model of combined antibiotic action
B. Kavcic, G. Tkačik, T. Bollenbach, BioRxiv (2020).
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2020 | Journal Article | IST-REx-ID: 7656   OA
Clustering of neural activity: A design principle for population codes
M.J. Berry, G. Tkačik, Frontiers in Computational Neuroscience 14 (2020) 20.
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2020 | Preprint | IST-REx-ID: 7675   OA
Normative models of enhancer function
R. Grah, B. Zoller, G. Tkačik, BioRxiv (2020).
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2020 | Journal Article | IST-REx-ID: 8084   OA
Critical dynamics and coupling in bursts of cortical rhythms indicate non-homeostatic mechanism for sleep-stage transitions and dual role of VLPO neurons in both sleep and wake
F. Lombardi, M. Gómez-Extremera, P. Bernaola-Galván, R. Vetrivelan, C.B. Saper, T.E. Scammell, P.C. Ivanov, Journal of Neuroscience 40 (2020) 171–190.
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2019 | Journal Article | IST-REx-ID: 6046   OA
Temporal order and precision of complex stress responses in individual bacteria
K. Mitosch, G. Rieckh, M.T. Bollenbach, Molecular Systems Biology 15 (2019).
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2019 | Journal Article | IST-REx-ID: 7103   OA
Non-equilibrium critical dynamics of bursts in θ and δ rhythms as fundamental characteristic of sleep and wake micro-architecture
J.W.J.L. Wang, F. Lombardi, X. Zhang, C. Anaclet, P.C. Ivanov, PLOS Computational Biology 15 (2019).
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2019 | Preprint | IST-REx-ID: 7083   OA
Mechanistic origin of drug interactions between translation-inhibiting antibiotics
B. Kavcic, G. Tkačik, T. Bollenbach, BioRxiv (n.d.).
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2019 | Preprint | IST-REx-ID: 7552   OA
Action at a distance in transcriptional regulation
W. Bialek, T. Gregor, G. Tkačik, ArXiv:1912.08579 (n.d.).
View | Download (ext.) | arXiv
 
2019 | Journal Article | IST-REx-ID: 5817
Limiting shapes of confined lipid vesicles
B. Kavcic, A. Sakashita, H. Noguchi, P. Ziherl, Soft Matter 15 (2019) 602–614.
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2019 | Thesis | IST-REx-ID: 6473
Estimating information flow in single cells
S.A. Cepeda Humerez, Estimating Information Flow in Single Cells, IST Austria, 2019.
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2019 | Journal Article | IST-REx-ID: 6049   OA
Feedback-induced self-oscillations in large interacting systems subjected to phase transitions
D. De Martino, Journal of Physics A: Mathematical and Theoretical 52 (2019).
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2019 | Journal Article | IST-REx-ID: 6784   OA
Molecular noise of innate immunity shapes bacteria-phage ecologies
J. Ruess, M. Pleska, C.C. Guet, G. Tkačik, PLoS Computational Biology 15 (2019).
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2019 | Journal Article | IST-REx-ID: 5945
Optimal decoding of cellular identities in a genetic network
M.D. Petkova, G. Tkacik, W. Bialek, E.F. Wieschaus, T. Gregor, Cell 176 (2019) 844–855.e15.
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2019 | Journal Article | IST-REx-ID: 7422   OA
eGFRD in all dimensions
T.R. Sokolowski, J. Paijmans, L. Bossen, T. Miedema, M. Wehrens, N.B. Becker, K. Kaizu, K. Takahashi, M. Dogterom, P.R. ten Wolde, The Journal of Chemical Physics 150 (2019) 054108.
View | DOI | Download (ext.) | arXiv
 
2019 | Journal Article | IST-REx-ID: 6900   OA
Estimating information in time-varying signals
S.A. Cepeda Humerez, J. Ruess, G. Tkačik, PLoS Computational Biology 15 (2019) e1007290.
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