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134 Publications
2021 | Journal Article | IST-REx-ID: 8997 | 
Minimal biophysical model of combined antibiotic action
B. Kavcic, G. Tkačik, M.T. Bollenbach, PLOS Computational Biology 17 (2021).
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B. Kavcic, G. Tkačik, M.T. Bollenbach, PLOS Computational Biology 17 (2021).
2021 | Journal Article | IST-REx-ID: 9226
The many bits of positional information
G. Tkačik, T. Gregor, Development 148 (2021).
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| DOI
| PubMed | Europe PMC
G. Tkačik, T. Gregor, Development 148 (2021).
2021 | Journal Article | IST-REx-ID: 9283 |
Local genetic context shapes the function of a gene regulatory network
A.A. Nagy-Staron, K. Tomasek, C. Caruso Carter, E. Sonnleitner, B. Kavcic, T. Paixão, C.C. Guet, ELife 10 (2021).
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A.A. Nagy-Staron, K. Tomasek, C. Caruso Carter, E. Sonnleitner, B. Kavcic, T. Paixão, C.C. Guet, ELife 10 (2021).
2021 | Journal Article | IST-REx-ID: 9362 |
Inferring the function performed by a recurrent neural network
M.J. Chalk, G. Tkačik, O. Marre, PLoS ONE 16 (2021).
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M.J. Chalk, G. Tkačik, O. Marre, PLoS ONE 16 (2021).
2021 | Journal Article | IST-REx-ID: 9439 |
Efficient and adaptive sensory codes
W.F. Mlynarski, A.M. Hermundstad, Nature Neuroscience (2021).
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W.F. Mlynarski, A.M. Hermundstad, Nature Neuroscience (2021).
2020 | Journal Article | IST-REx-ID: 8084 |
Critical dynamics and coupling in bursts of cortical rhythms indicate non-homeostatic mechanism for sleep-stage transitions and dual role of VLPO neurons in both sleep and wake
F. Lombardi, M. Gómez-Extremera, P. Bernaola-Galván, R. Vetrivelan, C.B. Saper, T.E. Scammell, P.C. Ivanov, Journal of Neuroscience 40 (2020) 171–190.
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F. Lombardi, M. Gómez-Extremera, P. Bernaola-Galván, R. Vetrivelan, C.B. Saper, T.E. Scammell, P.C. Ivanov, Journal of Neuroscience 40 (2020) 171–190.
2020 | Journal Article | IST-REx-ID: 8105 |
Power-law correlations and coupling of active and quiet states underlie a class of complex systems with self-organization at criticality
F. Lombardi, J.W.J.L. Wang, X. Zhang, P.C. Ivanov, EPJ Web of Conferences 230 (2020).
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F. Lombardi, J.W.J.L. Wang, X. Zhang, P.C. Ivanov, EPJ Web of Conferences 230 (2020).
2020 | Thesis | IST-REx-ID: 8155 |
Gene regulation across scales – how biophysical constraints shape evolution
R. Grah, Gene Regulation across Scales – How Biophysical Constraints Shape Evolution, IST Austria, 2020.
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R. Grah, Gene Regulation across Scales – How Biophysical Constraints Shape Evolution, IST Austria, 2020.
2020 | Journal Article | IST-REx-ID: 8250 |
Mechanisms of drug interactions between translation-inhibiting antibiotics
B. Kavcic, G. Tkačik, M.T. Bollenbach, Nature Communications 11 (2020).
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B. Kavcic, G. Tkačik, M.T. Bollenbach, Nature Communications 11 (2020).
2020 | Thesis | IST-REx-ID: 8657
Perturbations of protein synthesis: from antibiotics to genetics and physiology
B. Kavcic, Perturbations of Protein Synthesis: From Antibiotics to Genetics and Physiology, IST Austria, 2020.
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B. Kavcic, Perturbations of Protein Synthesis: From Antibiotics to Genetics and Physiology, IST Austria, 2020.
2020 | Journal Article | IST-REx-ID: 8698 |
Learning probabilistic neural representations with randomly connected circuits
O. Maoz, G. Tkačik, M.S. Esteki, R. Kiani, E. Schneidman, Proceedings of the National Academy of Sciences of the United States of America 117 (2020) 25066–25073.
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O. Maoz, G. Tkačik, M.S. Esteki, R. Kiani, E. Schneidman, Proceedings of the National Academy of Sciences of the United States of America 117 (2020) 25066–25073.
2020 | Preprint | IST-REx-ID: 7463 |
Long-range temporal correlations in the broadband resting state activity of the human brain revealed by neuronal avalanches
F. Lombardi, O. Shriki, H.J. Herrmann, L. de Arcangelis, BioRxiv (2020).
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F. Lombardi, O. Shriki, H.J. Herrmann, L. de Arcangelis, BioRxiv (2020).
2020 | Journal Article | IST-REx-ID: 7490 |
Evolutionarily unique mechanistic framework of clathrin-mediated endocytosis in plants
M. Narasimhan, A.J. Johnson, R. Prizak, W. Kaufmann, S. Tan, B.E. Casillas Perez, J. Friml, ELife 9 (2020).
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| PubMed | Europe PMC
M. Narasimhan, A.J. Johnson, R. Prizak, W. Kaufmann, S. Tan, B.E. Casillas Perez, J. Friml, ELife 9 (2020).
2020 | Preprint | IST-REx-ID: 7553 |
Statistical analysis and optimality of biological systems
W.F. Mlynarski, M. Hledik, T.R. Sokolowski, G. Tkačik, BioRxiv (n.d.).
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W.F. Mlynarski, M. Hledik, T.R. Sokolowski, G. Tkačik, BioRxiv (n.d.).
2020 | Journal Article | IST-REx-ID: 7569 |
The relation between crosstalk and gene regulation form revisited
R. Grah, T. Friedlander, PLOS Computational Biology 16 (2020).
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R. Grah, T. Friedlander, PLOS Computational Biology 16 (2020).
2020 | Journal Article | IST-REx-ID: 7652 |
Gene amplification as a form of population-level gene expression regulation
I. Tomanek, R. Grah, M. Lagator, A.M.C. Andersson, J.P. Bollback, G. Tkačik, C.C. Guet, Nature Ecology & Evolution 4 (2020) 612–625.
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I. Tomanek, R. Grah, M. Lagator, A.M.C. Andersson, J.P. Bollback, G. Tkačik, C.C. Guet, Nature Ecology & Evolution 4 (2020) 612–625.
2020 | Journal Article | IST-REx-ID: 7656 |
Clustering of neural activity: A design principle for population codes
M.J. Berry, G. Tkačik, Frontiers in Computational Neuroscience 14 (2020).
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| PubMed | Europe PMC
M.J. Berry, G. Tkačik, Frontiers in Computational Neuroscience 14 (2020).
2020 | Preprint | IST-REx-ID: 7673 |
A minimal biophysical model of combined antibiotic action
B. Kavcic, G. Tkačik, M.T. Bollenbach, BioRxiv (2020).
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| DOI
| Download Preprint (ext.)
B. Kavcic, G. Tkačik, M.T. Bollenbach, BioRxiv (2020).
2020 | Preprint | IST-REx-ID: 7675 |
Normative models of enhancer function
R. Grah, B. Zoller, G. Tkačik, BioRxiv (2020).
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R. Grah, B. Zoller, G. Tkačik, BioRxiv (2020).
2020 | Journal Article | IST-REx-ID: 8955 |
Network physiology of cortico–muscular interactions
R. Rizzo, X. Zhang, J.W.J.L. Wang, F. Lombardi, P.C. Ivanov, Frontiers in Physiology 11 (2020).
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| PubMed | Europe PMC
R. Rizzo, X. Zhang, J.W.J.L. Wang, F. Lombardi, P.C. Ivanov, Frontiers in Physiology 11 (2020).