Narasimhan, Madhumitha, Alexander J Johnson, Roshan Prizak, Walter Kaufmann, Shutang Tan, Barbara E Casillas Perez, and Jií Friml. “Evolutionarily Unique Mechanistic Framework of Clathrin-Mediated Endocytosis in Plants.”https://doi.org/10.7554/eLife.52067__ELife. eLife Sciences Publications, 2020.https://doi.org/10.7554/eLife.52067 .
LibreCat: https://research-explorer.ista.ac.at/record/7490
DOI: 10.7554/eLife.52067
WoS: 000514104100001
PMID: 31971511

Grah, Rok, and Tamar Friedlander. “Distribution of Crosstalk Values.”https://doi.org/10.1371/journal.pcbi.1007642.s003__Public Library of Science, 2020.https://doi.org/10.1371/journal.pcbi.1007642.s003 .
LibreCat: https://research-explorer.ista.ac.at/record/9779
DOI: 10.1371/journal.pcbi.1007642.s003

Grah, Rok, and Tamar Friedlander. “Supporting Information.”https://doi.org/10.1371/journal.pcbi.1007642.s001__Public Library of Science, 2020.https://doi.org/10.1371/journal.pcbi.1007642.s001 .
LibreCat: https://research-explorer.ista.ac.at/record/9776
DOI: 10.1371/journal.pcbi.1007642.s001

Berry, Michael J., and Gasper Tkadik. “Clustering of Neural Activity: A Design Principle for Population Codes.”https://doi.org/10.3389/fncom.2020.00020__Frontiers in Computational Neuroscience. Frontiers, 2020.https://doi.org/10.3389/fncom.2020.00020 .
LibreCat: https://research-explorer.ista.ac.at/record/7656
DOI: 10.3389/fncom.2020.00020
WoS: 000525543200001
PMID: 32231528

Maoz, Ori, Gasper Tkadik, Mohamad Saleh Esteki, Roozbeh Kiani, and Elad Schneidman. “Learning Probabilistic Neural Representations with Randomly Connected Circuits.”https://doi.org/10.1073/pnas.1912804117__Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2020.https://doi.org/10.1073/pnas.1912804117 .
LibreCat: https://research-explorer.ista.ac.at/record/8698
DOI: 10.1073/pnas.1912804117
WoS: 000579045200012
PMID: 32948691

Rizzo, Rossella, Xiyun Zhang, Jilin W.J.L. Wang, Fabrizio Lombardi, and Plamen Ch Ivanov. “Network Physiology of Cortico–Muscular Interactions.”https://doi.org/10.3389/fphys.2020.558070__Frontiers in Physiology. Frontiers, 2020.https://doi.org/10.3389/fphys.2020.558070 .
LibreCat: https://research-explorer.ista.ac.at/record/8955
DOI: 10.3389/fphys.2020.558070
WoS: 000596849400001
PMID: 33324233

Grah, Rok, Benjamin Zoller, and Gasper Tkadik. “Nonequilibrium Models of Optimal Enhancer Function.”https://doi.org/10.1073/pnas.2006731117__PNAS. National Academy of Sciences, 2020.https://doi.org/10.1073/pnas.2006731117 .
LibreCat: https://research-explorer.ista.ac.at/record/9000
DOI: 10.1073/pnas.2006731117
WoS: 000600608300015
PMID: 33268497

Lombardi, Fabrizio, Manuel Gómez-Extremera, Pedro Bernaola-Galván, Ramalingam Vetrivelan, Clifford B. Saper, Thomas E. Scammell, and Plamen Ch. Ivanov. “Critical Dynamics and Coupling in Bursts of Cortical Rhythms Indicate Non-Homeostatic Mechanism for Sleep-Stage Transitions and Dual Role of VLPO Neurons in Both Sleep and Wake.”https://doi.org/10.1523/jneurosci.1278-19.2019__Journal of Neuroscience. Society for Neuroscience, 2020.https://doi.org/10.1523/jneurosci.1278-19.2019 .
LibreCat: https://research-explorer.ista.ac.at/record/8084
DOI: 10.1523/jneurosci.1278-19.2019
WoS: 000505167600016
PMID: 31694962

Grah, Rok. “Gene Regulation across Scales – How Biophysical Constraints Shape Evolution.”https://doi.org/10.15479/AT:ISTA:8155__Institute of Science and Technology Austria, 2020.https://doi.org/10.15479/AT:ISTA:8155 .
LibreCat: https://research-explorer.ista.ac.at/record/8155
DOI: 10.15479/AT:ISTA:8155

Grah, Rok, Benjamin Zoller, and Gasper Tkadik. “Normative Models of Enhancer Function.”https://doi.org/10.1101/2020.04.08.029405__BioRxiv. Cold Spring Harbor Laboratory, 2020.https://doi.org/10.1101/2020.04.08.029405 .
LibreCat: https://research-explorer.ista.ac.at/record/7675
DOI: 10.1101/2020.04.08.029405

Grah, Rok, and Tamar Friedlander. “The Relation between Crosstalk and Gene Regulation Form Revisited.”https://doi.org/10.1371/journal.pcbi.1007642__PLOS Computational Biology. Public Library of Science, 2020.https://doi.org/10.1371/journal.pcbi.1007642 .
LibreCat: https://research-explorer.ista.ac.at/record/7569
DOI: 10.1371/journal.pcbi.1007642
WoS: 000526725200019

Grah, Rok, and Tamar Friedlander. “Maximizing Crosstalk.”https://doi.org/10.1371/journal.pcbi.1007642.s002__Public Library of Science, 2020.https://doi.org/10.1371/journal.pcbi.1007642.s002 .
LibreCat: https://research-explorer.ista.ac.at/record/9777
DOI: 10.1371/journal.pcbi.1007642.s002

Kavcic, Bor. “Perturbations of Protein Synthesis: From Antibiotics to Genetics and Physiology.”https://doi.org/10.15479/AT:ISTA:8657__Institute of Science and Technology Austria, 2020.https://doi.org/10.15479/AT:ISTA:8657 .
LibreCat: https://research-explorer.ista.ac.at/record/8657
DOI: 10.15479/AT:ISTA:8657

Kavcic, Bor, Gasper Tkadik, and Mark Tobias Bollenbach. “Mechanisms of Drug Interactions between Translation-Inhibiting Antibiotics.”https://doi.org/10.1038/s41467-020-17734-z__Nature Communications. Springer Nature, 2020.https://doi.org/10.1038/s41467-020-17734-z .
LibreCat: https://research-explorer.ista.ac.at/record/8250
DOI: 10.1038/s41467-020-17734-z
WoS: 000562769300008

Kavcic, Bor, Gasper Tkadik, and Mark Tobias Bollenbach. “A Minimal Biophysical Model of Combined Antibiotic Action.”https://doi.org/10.1101/2020.04.18.047886__BioRxiv. Cold Spring Harbor Laboratory, 2020.https://doi.org/10.1101/2020.04.18.047886 .
LibreCat: https://research-explorer.ista.ac.at/record/7673
DOI: 10.1101/2020.04.18.047886

Tomanek, Isabella, Rok Grah, M. Lagator, A. M. C. Andersson, Jonathan P Bollback, Gasper Tkadik, and Calin C Guet. “Gene Amplification as a Form of Population-Level Gene Expression Regulation.”https://doi.org/10.1038/s41559-020-1132-7__Nature Ecology &; Evolution. Springer Nature, 2020.https://doi.org/10.1038/s41559-020-1132-7 .
LibreCat: https://research-explorer.ista.ac.at/record/7652
DOI: 10.1038/s41559-020-1132-7
WoS: 000519008300005

Bialek, William, Thomas Gregor, and Gasper Tkadik. “Action at a Distance in Transcriptional Regulation.” ArXiv:1912.08579. ArXiv, n.d.
LibreCat: https://research-explorer.ista.ac.at/record/7552
arXiv: 1912.08579

Petkova, Mariela D., Gasper Tkadik, William Bialek, Eric F. Wieschaus, and Thomas Gregor. “Optimal Decoding of Cellular Identities in a Genetic Network.”https://doi.org/10.1016/j.cell.2019.01.007__Cell. Cell Press, 2019.https://doi.org/10.1016/j.cell.2019.01.007 .
LibreCat: https://research-explorer.ista.ac.at/record/5945
DOI: 10.1016/j.cell.2019.01.007
WoS: 000457969200015
PMID: 30712870

De Martino, Daniele. “Feedback-Induced Self-Oscillations in Large Interacting Systems Subjected to Phase Transitions.”https://doi.org/10.1088/1751-8121/aaf2dd__Journal of Physics A: Mathematical and Theoretical. IOP Publishing, 2019.https://doi.org/10.1088/1751-8121/aaf2dd .
LibreCat: https://research-explorer.ista.ac.at/record/6049
DOI: 10.1088/1751-8121/aaf2dd
WoS: 000455379500001

Mitosch, Karin, Georg Rieckh, and Mark Tobias Bollenbach. “Temporal Order and Precision of Complex Stress Responses in Individual Bacteria.”https://doi.org/10.15252/msb.20188470__Molecular Systems Biology. Embo Press, 2019.https://doi.org/10.15252/msb.20188470 .
LibreCat: https://research-explorer.ista.ac.at/record/6046
DOI: 10.15252/msb.20188470
WoS: 000459628300003
PMID: 30765425

Ruess, Jakob, Maros Pleska, Calin C Guet, and Gasper Tkadik. “Molecular Noise of Innate Immunity Shapes Bacteria-Phage Ecologies.”https://doi.org/10.1371/journal.pcbi.1007168__PLoS Computational Biology. Public Library of Science, 2019.https://doi.org/10.1371/journal.pcbi.1007168 .
LibreCat: https://research-explorer.ista.ac.at/record/6784
DOI: 10.1371/journal.pcbi.1007168
WoS: 000481577700032

Ruess, Jakob, Maros Pleska, Calin C Guet, and Gasper Tkadik. “Supporting Text and Results.”https://doi.org/10.1371/journal.pcbi.1007168.s001__Public Library of Science, 2019.https://doi.org/10.1371/journal.pcbi.1007168.s001 .
LibreCat: https://research-explorer.ista.ac.at/record/9786
DOI: 10.1371/journal.pcbi.1007168.s001

Sokolowski, Thomas R, Joris Paijmans, Laurens Bossen, Thomas Miedema, Martijn Wehrens, Nils B. Becker, Kazunari Kaizu, Koichi Takahashi, Marileen Dogterom, and Pieter Rein ten Wolde. “EGFRD in All Dimensions.”https://doi.org/10.1063/1.5064867__The Journal of Chemical Physics. AIP Publishing, 2019.https://doi.org/10.1063/1.5064867 .
LibreCat: https://research-explorer.ista.ac.at/record/7422
DOI: 10.1063/1.5064867
WoS: 000458109300009
arXiv: 1708.09364

Cepeda Humerez, Sarah A, Jakob Ruess, and Gasper Tkadik. “Estimating Information in Time-Varying Signals.”https://doi.org/10.1371/journal.pcbi.1007290__PLoS Computational Biology. Public Library of Science, 2019.https://doi.org/10.1371/journal.pcbi.1007290 .
LibreCat: https://research-explorer.ista.ac.at/record/6900
DOI: 10.1371/journal.pcbi.1007290
WoS: 000489741800021
PMID: 31479447

Lang, Moritz, and Mikhail Shkolnikov. “Harmonic Dynamics of the Abelian Sandpile.”https://doi.org/10.1073/pnas.1812015116__Proceedings of the National Academy of Sciences. National Academy of Sciences, 2019.https://doi.org/10.1073/pnas.1812015116 .
LibreCat: https://research-explorer.ista.ac.at/record/196
DOI: 10.1073/pnas.1812015116
WoS: 000459074400013
PMID:  30728300
arXiv: 1806.10823

Kavcic, Bor, A. Sakashita, H. Noguchi, and P. Ziherl. “Limiting Shapes of Confined Lipid Vesicles.”https://doi.org/10.1039/c8sm01956h__Soft Matter. Royal Society of Chemistry, 2019.https://doi.org/10.1039/c8sm01956h .
LibreCat: https://research-explorer.ista.ac.at/record/5817
DOI: 10.1039/c8sm01956h
WoS: 000457329700003
PMID: 30629082

Cepeda Humerez, Sarah A. “Estimating Information Flow in Single Cells.”https://doi.org/10.15479/AT:ISTA:6473__Institute of Science and Technology Austria, 2019.https://doi.org/10.15479/AT:ISTA:6473 .
LibreCat: https://research-explorer.ista.ac.at/record/6473
DOI: 10.15479/AT:ISTA:6473

Prizak, Roshan. “Coevolution of Transcription Factors and Their Binding Sites in Sequence Space.”https://doi.org/10.15479/at:ista:th6071__Institute of Science and Technology Austria, 2019.https://doi.org/10.15479/at:ista:th6071 .
LibreCat: https://research-explorer.ista.ac.at/record/6071
DOI: 10.15479/at:ista:th6071

Wang, Jilin W. J. L., Fabrizio Lombardi, Xiyun Zhang, Christelle Anaclet, and Plamen Ch. Ivanov. “Non-Equilibrium Critical Dynamics of Bursts in ;8 and ;4 Rhythms as Fundamental Characteristic of Sleep and Wake Micro-Architecture.”https://doi.org/10.1371/journal.pcbi.1007268__PLoS Computational Biology. Public Library of Science, 2019.https://doi.org/10.1371/journal.pcbi.1007268 .
LibreCat: https://research-explorer.ista.ac.at/record/7103
DOI: 10.1371/journal.pcbi.1007268
WoS: 000500976100014
PMID: 31725712

Carballo-Pacheco, Martín, Jonathan Desponds, Tatyana Gavrilchenko, Andreas Mayer, Roshan Prizak, Gautam Reddy, Ilya Nemenman, and Thierry Mora. “Receptor Crosstalk Improves Concentration Sensing of Multiple Ligands.”https://doi.org/10.1103/PhysRevE.99.022423__Physical Review E. American Physical Society, 2019.https://doi.org/10.1103/PhysRevE.99.022423 .
LibreCat: https://research-explorer.ista.ac.at/record/6090
DOI: 10.1103/PhysRevE.99.022423
WoS: 000459916500007

Hledik, Michal, Thomas R Sokolowski, and Gasper Tkadik. “A Tight Upper Bound on Mutual Information.”https://doi.org/10.1109/ITW44776.2019.8989292__In IEEE Information Theory Workshop, ITW 2019. IEEE, 2019.https://doi.org/10.1109/ITW44776.2019.8989292 .
LibreCat: https://research-explorer.ista.ac.at/record/7606
DOI: 10.1109/ITW44776.2019.8989292
WoS: 000540384500015
arXiv: 1812.01475

De Martino, Andrea, and Daniele De Martino. “An Introduction to the Maximum Entropy Approach and Its Application to Inference Problems in Biology.”https://doi.org/10.1016/j.heliyon.2018.e00596__Heliyon. Elsevier, 2018.https://doi.org/10.1016/j.heliyon.2018.e00596 .
LibreCat: https://research-explorer.ista.ac.at/record/306
DOI: 10.1016/j.heliyon.2018.e00596

Misun, Patrick, Axel Birchler, Moritz Lang, Andreas Hierlemann, and Olivier Frey. “Fabrication and Operation of Microfluidic Hanging Drop Networks.”https://doi.org/10.1007/978-1-4939-7792-5_15__Methods in Molecular Biology. Springer, 2018.https://doi.org/10.1007/978-1-4939-7792-5_15 .
LibreCat: https://research-explorer.ista.ac.at/record/305
DOI: 10.1007/978-1-4939-7792-5_15

Granados, Alejandro, Julian Pietsch, Sarah A Cepeda Humerez, Isebail Farquhar, Gasper Tkadik, and Peter Swain. “Distributed and Dynamic Intracellular Organization of Extracellular Information.”https://doi.org/10.1073/pnas.1716659115__PNAS. National Academy of Sciences, 2018.https://doi.org/10.1073/pnas.1716659115 .
LibreCat: https://research-explorer.ista.ac.at/record/281
DOI: 10.1073/pnas.1716659115
WoS: 000434114900071
PMID: 29784812

Bodova, Katarina, Tadeas Priklopil, David Field, Nicholas H Barton, and Melinda Pickup. “Evolutionary Pathways for the Generation of New Self-Incompatibility Haplotypes in a Non-Self Recognition System.”https://doi.org/10.1534/genetics.118.300748__Genetics. Genetics Society of America, 2018.https://doi.org/10.1534/genetics.118.300748 .
LibreCat: https://research-explorer.ista.ac.at/record/316
DOI: 10.1534/genetics.118.300748
WoS: 000437171700017

Bodova, Katarina, Tadeas Priklopil, David Field, Nicholas H Barton, and Melinda Pickup. “Supplemental Material for Bodova et Al., 2018.”https://doi.org/10.25386/genetics.6148304.v1__Genetics Society of America, 2018.https://doi.org/10.25386/genetics.6148304.v1 .
LibreCat: https://research-explorer.ista.ac.at/record/9813
DOI: 10.25386/genetics.6148304.v1

Bod’Ová, Katarína, Gabriel Mitchell, Roy Harpaz, Elad Schneidman, and Gasper Tkadik. “Probabilistic Models of Individual and Collective Animal Behavior.”https://doi.org/10.1371/journal.pone.0193049__PLoS One. Public Library of Science, 2018.https://doi.org/10.1371/journal.pone.0193049 .
LibreCat: https://research-explorer.ista.ac.at/record/406
DOI: 10.1371/journal.pone.0193049
WoS: 000426896800032

Pleska, Maros, Moritz Lang, Dominik Refardt, Bruce Levin, and Calin C Guet. “Phage-Host Population Dynamics Promotes Prophage Acquisition in Bacteria with Innate Immunity.”https://doi.org/10.1038/s41559-017-0424-z__Nature Ecology and Evolution. Springer Nature, 2018.https://doi.org/10.1038/s41559-017-0424-z .
LibreCat: https://research-explorer.ista.ac.at/record/457
DOI: 10.1038/s41559-017-0424-z
WoS: 000426516400027

Bod’Ová, Katarína, Gabriel Mitchell, Roy Harpaz, Elad Schneidman, and Gasper Tkadik. “Implementation of the Inference Method in Matlab.”https://doi.org/10.1371/journal.pone.0193049.s001__Public Library of Science, 2018.https://doi.org/10.1371/journal.pone.0193049.s001 .
LibreCat: https://research-explorer.ista.ac.at/record/9831
DOI: 10.1371/journal.pone.0193049.s001

Ferrari, Ulisse, Stephane Deny, Matthew J Chalk, Gasper Tkadik, Olivier Marre, and Thierry Mora. “Separating Intrinsic Interactions from Extrinsic Correlations in a Network of Sensory Neurons.”https://doi.org/10.1103/PhysRevE.98.042410__Physical Review E. American Physical Society, 2018.https://doi.org/10.1103/PhysRevE.98.042410 .
LibreCat: https://research-explorer.ista.ac.at/record/31
DOI: 10.1103/PhysRevE.98.042410
WoS: 000447486100004

Chalk, Matthew J, Olivier Marre, and Gasper Tkadik. “Toward a Unified Theory of Efficient, Predictive, and Sparse Coding.”https://doi.org/10.1073/pnas.1711114115__PNAS. National Academy of Sciences, 2018.https://doi.org/10.1073/pnas.1711114115 .
LibreCat: https://research-explorer.ista.ac.at/record/543
DOI: 10.1073/pnas.1711114115
WoS: 000419128700049

Bodova, Katarina, Jan Haskovec, and Peter Markowich. “Well Posedness and Maximum Entropy Approximation for the Dynamics of Quantitative Traits.”https://doi.org/10.1016/j.physd.2017.10.015__Physica D: Nonlinear Phenomena. Elsevier, 2018.https://doi.org/10.1016/j.physd.2017.10.015 .
LibreCat: https://research-explorer.ista.ac.at/record/607
DOI: 10.1016/j.physd.2017.10.015
WoS: 000437962900012
arXiv: 1704.08757

Palmer, Adam, Remy P Chait, and Roy Kishony. “Nonoptimal Gene Expression Creates Latent Potential for Antibiotic Resistance.”https://doi.org/10.1093/molbev/msy163__Molecular Biology and Evolution. Oxford University Press, 2018.https://doi.org/10.1093/molbev/msy163 .
LibreCat: https://research-explorer.ista.ac.at/record/19
DOI: 10.1093/molbev/msy163
WoS: 000452567200006
PMID: 30169679

Botella Soler, Vicente, Stephane Deny, Georg S Martius, Olivier Marre, and Gasper Tkadik. “Nonlinear Decoding of a Complex Movie from the Mammalian Retina.”https://doi.org/10.1371/journal.pcbi.1006057__PLoS Computational Biology. Public Library of Science, 2018.https://doi.org/10.1371/journal.pcbi.1006057 .
LibreCat: https://research-explorer.ista.ac.at/record/292
DOI: 10.1371/journal.pcbi.1006057
WoS: 000434012100002

De Martino, Daniele, Andersson Anna Mc, Tobias Bergmiller, Calin C Guet, and Gasper Tkadik. “Statistical Mechanics for Metabolic Networks during Steady State Growth.”https://doi.org/10.1038/s41467-018-05417-9__Nature Communications. Springer Nature, 2018.https://doi.org/10.1038/s41467-018-05417-9 .
LibreCat: https://research-explorer.ista.ac.at/record/161
DOI: 10.1038/s41467-018-05417-9
WoS: 000440149300021

Igler, Claudia, Mato Lagator, Gasper Tkadik, Jonathan P Bollback, and Calin C Guet. “Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring.”https://doi.org/10.1038/s41559-018-0651-y__Nature Ecology and Evolution. Nature Publishing Group, 2018.https://doi.org/10.1038/s41559-018-0651-y .
LibreCat: https://research-explorer.ista.ac.at/record/67
DOI: 10.1038/s41559-018-0651-y
WoS: 000447947600021

Chait, Remy P, Jakob Ruess, Tobias Bergmiller, Gasper Tkadik, and Calin C Guet. “Shaping Bacterial Population Behavior through Computer Interfaced Control of Individual Cells.”https://doi.org/10.1038/s41467-017-01683-1__Nature Communications. Nature Publishing Group, 2017.https://doi.org/10.1038/s41467-017-01683-1 .
LibreCat: https://research-explorer.ista.ac.at/record/613
DOI: 10.1038/s41467-017-01683-1

Der, Ralf, and Georg S Martius. “Dynamical Self Consistency Leads to Behavioral Development and Emergent Social Interactions in Robots.”https://doi.org/10.1109/DEVLRN.2016.7846789__IEEE, 2017.https://doi.org/10.1109/DEVLRN.2016.7846789 .
LibreCat: https://research-explorer.ista.ac.at/record/652
DOI: 10.1109/DEVLRN.2016.7846789

Der, Ralf, and Georg S Martius. “Self Organized Behavior Generation for Musculoskeletal Robots.”https://doi.org/10.3389/fnbot.2017.00008__Frontiers in Neurorobotics. Frontiers Research Foundation, 2017.https://doi.org/10.3389/fnbot.2017.00008 .
LibreCat: https://research-explorer.ista.ac.at/record/658
DOI: 10.3389/fnbot.2017.00008

Humplik, Jan, and Gasper Tkadik. “Probabilistic Models for Neural Populations That Naturally Capture Global Coupling and Criticality.”https://doi.org/10.1371/journal.pcbi.1005763__PLoS Computational Biology. Public Library of Science, 2017.https://doi.org/10.1371/journal.pcbi.1005763 .
LibreCat: https://research-explorer.ista.ac.at/record/720
DOI: 10.1371/journal.pcbi.1005763