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122 Publications

2018 | Journal Article | IST-REx-ID: 31
Separating intrinsic interactions from extrinsic correlations in a network of sensory neurons
U. Ferrari, S. Deny, M.J. Chalk, G. Tkacik, O. Marre, T. Mora, Physical Review E 98 (2018).
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2018 | Journal Article | IST-REx-ID: 543   OA
Toward a unified theory of efficient, predictive, and sparse coding
M.J. Chalk, O. Marre, G. Tkacik, PNAS 115 (2018).
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2018 | Journal Article | IST-REx-ID: 67
Evolutionary potential of transcription factors for gene regulatory rewiring
C. Igler, M. Lagator, G. Tkacik, J.P. Bollback, C.C. Guet, Nature Ecology and Evolution 2 (2018).
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2018 | Research Data | IST-REx-ID: 5587   OA
Supporting materials "STATISTICAL MECHANICS FOR METABOLIC NETWORKS IN STEADY-STATE GROWTH"
D. De Martino, G. Tkacik, Supporting Materials “STATISTICAL MECHANICS FOR METABOLIC NETWORKS IN STEADY-STATE GROWTH,” 2018.
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2018 | Journal Article | IST-REx-ID: 316
Evolutionary pathways for the generation of new self-incompatibility haplotypes in a non-self recognition system
K. Bodova, T. Priklopil, D. Field, N.H. Barton, M. Pickup, Genetics 209 (2018).
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2018 | Journal Article | IST-REx-ID: 19
Nonoptimal gene expression creates latent potential for antibiotic resistance
A. Palmer, R.P. Chait, R. Kishony, Molecular Biology and Evolution 35 (2018) 2669–2684.
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2018 | Preprint | IST-REx-ID: 196   OA
Harmonic dynamics of the Abelian sandpile
M. Lang, M. Shkolnikov, ArXiv (2018).
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2018 | Journal Article | IST-REx-ID: 305
Fabrication and operation of microfluidic hanging drop networks
P. Misun, A. Birchler, M. Lang, A. Hierlemann, O. Frey, Methods in Molecular Biology 1771 (2018).
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2018 | Journal Article | IST-REx-ID: 406   OA
Probabilistic models of individual and collective animal behavior
K. Bod’Ová, G. Mitchell, R. Harpaz, E. Schneidman, G. Tkacik, PLoS One 13 (2018).
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2018 | Journal Article | IST-REx-ID: 292
Nonlinear decoding of a complex movie from the mammalian retina
V. Botella Soler, S. Deny, G.S. Martius, O. Marre, G. Tkacik, PLoS Computational Biology 14 (2018).
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2018 | Research Data | IST-REx-ID: 5584   OA
Nonlinear decoding of a complex movie from the mammalian retina
S. Deny, O. Marre, V. Botella-Soler, G.S. Martius, G. Tkacik, Nonlinear Decoding of a Complex Movie from the Mammalian Retina, 2018.
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2018 | Journal Article | IST-REx-ID: 281   OA
Distributed and dynamic intracellular organization of extracellular information
A. Granados, J. Pietsch, S.A. Cepeda Humerez, I. Farquhar, G. Tkacik, P. Swain, PNAS 115 (2018).
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2018 | Journal Article | IST-REx-ID: 161   OA
Statistical mechanics for metabolic networks during steady state growth
D. De Martino, A.A. Mc, T. Bergmiller, C.C. Guet, G. Tkacik, Nature Communications 9 (2018).
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2018 | Journal Article | IST-REx-ID: 306   OA View | DOI | Download (ext.)
 
2018 | Journal Article | IST-REx-ID: 457
Phage-host population dynamics promotes prophage acquisition in bacteria with innate immunity
M. Pleska, M. Lang, D. Refardt, B. Levin, C.C. Guet, Nature Ecology and Evolution 2 (2018).
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2018 | Research Data | IST-REx-ID: 5585   OA
Data for the paper Evolutionary potential of transcription factors for gene regulatory rewiring
C. Igler, M. Lagator , G. Tkacik, J.P. Bollback, C.C. Guet, Data for the Paper Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring, 2018.
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2017 | Research Data | IST-REx-ID: 5562   OA
Multi-electrode array recording from salamander retinal ganglion cells
O. Marre, G. Tkacik, D. Amodei, E. Schneidman, W. Bialek, M. Berry, Multi-Electrode Array Recording from Salamander Retinal Ganglion Cells, 2017.
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2017 | Journal Article | IST-REx-ID: 720   OA View | Files available | DOI | Download (ext.)
 
2017 | Journal Article | IST-REx-ID: 1104   OA
Multiplexed computations in retinal ganglion cells of a single type
S. Deny, U. Ferrari, E. Mace, P. Yger, R. Caplette, S. Picaud, G. Tkacik, O. Marre, Nature Communications 8 (2017).
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2017 | Journal Article | IST-REx-ID: 947   OA
Quantifying the entropic cost of cellular growth control
D. De Martino, F. Capuani, A. De Martino, Physical Review E Statistical Nonlinear and Soft Matter Physics 96 (2017).
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