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69 Publications

2018 | Journal Article | IST-REx-ID: 279   OA
Negative selection in tumor genome evolution acts on essential cellular functions and the immunopeptidome
L. Zapata, O. Pich, L. Serrano, F. Kondrashov, S. Ossowski, M. Schaefer, Genome Biology 19 (2018).
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2016 | Journal Article | IST-REx-ID: 853
Metagenomic analyses of the late Pleistocene permafrost - Additional tools for reconstruction of environmental conditions
E. Rivkina, L. Petrovskaya, T. Vishnivetskaya, K. Krivushin, L. Shmakova, M. Tutukina, A. Meyers, F. Kondrashov, Biogeosciences 13 (2016) 2207–2219.
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2016 | Journal Article | IST-REx-ID: 896
Structure and evolutionary history of a large family of NLR proteins in the zebrafish
K. Howe, P. Schiffer, J. Zielinski, T. Wiehe, G. Laird, J. Marioni, O. Soylemez, F. Kondrashov, M. Leptin, Open Biology 6 (2016).
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2016 | Journal Article | IST-REx-ID: 850
Local fitness landscape of the green fluorescent protein
K. Sarkisyan, D. Bolotin, M. Meer, D. Usmanova, A. Mishin, G. Sharonov, D. Ivankov, N. Bozhanova, M. Baranov, O. Soylemez, N. Bogatyreva, P. Vlasov, E. Egorov, M. Logacheva, A. Kondrashov, D. Chudakov, E. Putintseva, I. Mamedov, D. Tawfik, K. Lukyanov, F. Kondrashov, Nature 533 (2016) 397–401.
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2016 | Journal Article | IST-REx-ID: 849
Saturation of recognition elements blocks evolution of new tRNA identities
A. Saint Léger, C. Bello, P. Dans, A. Torres, E. Novoa, N. Camacho, M. Orozco, F. Kondrashov, L. Ribas De Pouplana, Science Advances 2 (2016) e1501860–e1501860.
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2015 | Journal Article | IST-REx-ID: 866
Massively parallel enzyme kinetics reveals the substrate recognition landscape of the metalloprotease ADAMTS13
C. Kretz, M. Dai, O. Soylemez, A. Yee, K. Desch, D. Siemieniak, K. Tomberg, F. Kondrashov, F. Meng, D. Ginsburg, PNAS 112 (2015) 9328–9333.
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2015 | Journal Article | IST-REx-ID: 848
A model of substitution trajectories in sequence space and long-term protein evolution
D. Usmanova, L. Ferretti, I. Povolotskaya, P. Vlasov, F. Kondrashov, Molecular Biology and Evolution 32 (2015).
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2015 | Journal Article | IST-REx-ID: 886
Topological features of rugged fitness landscapes in sequence space
D. Kondrashov, F. Kondrashov, Trends in Genetics 31 (2015) 24–33.
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2015 | Journal Article | IST-REx-ID: 906
Recent origin of the methacrylate redox system in Geobacter sulfurreducens AM-1 through horizontal gene transfer
O. Arkhipova, M. Meer, G. Mikoulinskaia, M. Zakharova, A. Galushko, V. Akimenko, F. Kondrashov, PLoS One 10 (2015).
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2014 | Journal Article | IST-REx-ID: 845
Crossing-over in a hypervariable species preferentially occurs in regions of high local similarity
V. Seplyarskiy, M. Logacheva, A. Penin, M. Baranová, E. Leushkin, N. Demidenko, A. Klepikova, F. Kondrashov, A. Kondrashov, T. James, Molecular Biology and Evolution 31 (2014) 3016–3025.
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2014 | Journal Article | IST-REx-ID: 852
Long-Term asymmetrical acceleration of protein evolution after gene duplication
O. Rosello, F. Kondrashov, Genome Biology and Evolution 6 (2014) 1949–1955.
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2014 | Journal Article | IST-REx-ID: 865
Anti leprosy drug clofazimine inhibits growth of triple-negative breast cancer cells via inhibition of canonical Wnt signaling
A. Koval, P. Vlasov, P. Shichkova, S. Khunderyakova, Y. Markov, J. Panchenko, A. Volodina, F. Kondrashov, V. Katanaev, Biochemical Pharmacology 87 (2014) 571–578.
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2014 | Journal Article | IST-REx-ID: 892
A structural perspective of compensatory evolution
D. Ivankov, A. Finkelstein, F. Kondrashov, Current Opinion in Structural Biology 26 (2014) 104–112.
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2014 | Journal Article | IST-REx-ID: 856
Duplication of a promiscuous transcription factor drives the emergence of a new regulatory network
K. Pougach, A. Voet, F. Kondrashov, K. Voordeckers, J. Christiaens, B. Baying, V. Bénès, R. Sakai, J. Aerts, B. Zhu, P. Van Dijck, K. Verstrepen, Nature Communications 5 (2014).
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2014 | Journal Article | IST-REx-ID: 863
The ctenophore genome and the evolutionary origins of neural systems
L. Moroz, K. Kocot, M. Citarella, S. Dosung, T. Norekian, I. Povolotskaya, A. Grigorenko, C. Dailey, E. Berezikov, K. Buckley, A. Ptitsyn, D. Reshetov, K. Mukherjee, T. Moroz, Y. Bobkova, F. Yu, V. Kapitonov, J. Jurka, Y. Bobkov, J. Swore, D. Girardo, A. Fodor, F. Gusev, R. Sanford, R. Bruders, E. Kittler, C. Mills, J. Rast, R. Derelle, V. Solovyev, F. Kondrashov, B. Swalla, J. Sweedler, E. Rogaev, K. Halanych, A. Kohn, Nature 510 (2014) 109–114.
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2013 | Journal Article | IST-REx-ID: 905   OA
Birds of Mys Shmidta, north Chukotka, Russia
V. Arkhipov, T. Noah, S. Koschkar, F. Kondrashov, Forktail (2013) 25–30.
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2013 | Journal Article | IST-REx-ID: 894
Color differences among feral pigeons (Columba livia) are not attributable to sequence variation in the coding region of the melanocortin-1 receptor gene MC1R
R. Derelle, F. Kondrashov, V. Arkhipov, H. Corbel, A. Frantz, J. Gasparini, L. Jacquin, G. Jacob, S. Thibault, E. Baudry, BMC Research Notes 6 (2013).
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2013 | Journal Article | IST-REx-ID: 899
Breen et al. reply
M. Breen, C. Kemena, P. Vlasov, C. Notredame, F. Kondrashov, Nature 497 (2013) E2–E3.
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2012 | Journal Article | IST-REx-ID: 846
Estimating the rate of irreversibility in protein evolution
O. Soylemez, F. Kondrashov, Genome Biology and Evolution 4 (2012) 1213–1222.
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2012 | Journal Article | IST-REx-ID: 858
Stop codons in bacteria are not selectively equivalent
I. Povolotskaya, F. Kondrashov, A. Ledda, P. Vlasov, Biology Direct 7 (2012).
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