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97 Publications
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2021 | Journal Article | IST-REx-ID: 9046 | 
Römhild, Roderich, and Dan I. Andersson. “Mechanisms and Therapeutic Potential of Collateral Sensitivity to Antibiotics.” PLoS Pathogens. Public Library of Science, 2021. https://doi.org/10.1371/journal.ppat.1009172.
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| PubMed | Europe PMC
2021 | Journal Article | IST-REx-ID: 9283 |
Nagy-Staron, Anna A, Kathrin Tomasek, Caroline Caruso Carter, Elisabeth Sonnleitner, Bor Kavcic, Tiago Paixão, and Calin C Guet. “Local Genetic Context Shapes the Function of a Gene Regulatory Network.” ELife. eLife Sciences Publications, 2021. https://doi.org/10.7554/elife.65993.
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2021 | Journal Article | IST-REx-ID: 9647 |
Petrov, Tatjana, Claudia Igler, Ali Sezgin, Thomas A Henzinger, and Calin C Guet. “Long Lived Transients in Gene Regulation.” Theoretical Computer Science. Elsevier, n.d. https://doi.org/10.1016/j.tcs.2021.05.023.
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2020 | Thesis | IST-REx-ID: 8155 |
Grah, Rok. “Gene Regulation across Scales – How Biophysical Constraints Shape Evolution.” IST Austria, 2020. https://doi.org/10.15479/AT:ISTA:8155.
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2020 | Book Chapter | IST-REx-ID: 8173
Kainrath, Stephanie, and Harald L Janovjak. “Design and Application of Light-Regulated Receptor Tyrosine Kinases.” In Photoswitching Proteins, edited by Dominik Niopek, 2173:233–46. MIMB. Springer Nature, 2020. https://doi.org/10.1007/978-1-0716-0755-8_16.
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2020 | Research Data | IST-REx-ID: 7383 |
Grah, Rok. “Matlab Scripts for the Paper: Gene Amplification as a Form of Population-Level Gene Expression Regulation.” IST Austria, 2020. https://doi.org/10.15479/AT:ISTA:7383.
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2020 | Preprint | IST-REx-ID: 7675 |
Grah, Rok, Benjamin Zoller, and Gašper Tkačik. “Normative Models of Enhancer Function.” BioRxiv. Cold Spring Harbor Laboratory, 2020. https://doi.org/10.1101/2020.04.08.029405.
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2020 | Thesis | IST-REx-ID: 7680
Kainrath, Stephanie. “Synthetic Tools for Optogenetic and Chemogenetic Inhibition of Cellular Signals.” IST Austria, 2020. https://doi.org/10.15479/AT:ISTA:7680.
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2020 | Research Data | IST-REx-ID: 8951 |
Nagy-Staron, Anna A. “Sequences of Gene Regulatory Network Permutations for the Article ‘Local Genetic Context Shapes the Function of a Gene Regulatory Network.’” IST Austria, 2020. https://doi.org/10.15479/AT:ISTA:8951.
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2020 | Journal Article | IST-REx-ID: 7652 |
Tomanek, Isabella, Rok Grah, M. Lagator, A. M. C. Andersson, Jonathan P Bollback, Gašper Tkačik, and Calin C Guet. “Gene Amplification as a Form of Population-Level Gene Expression Regulation.” Nature Ecology & Evolution. Springer Nature, 2020. https://doi.org/10.1038/s41559-020-1132-7.
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2020 | Thesis | IST-REx-ID: 8653
Tomanek, Isabella. “The Evolution of Gene Expression by Copy Number and Point Mutations.” IST Austria, 2020. https://doi.org/10.15479/AT:ISTA:8653.
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2020 | Journal Article | IST-REx-ID: 7569 |
Grah, Rok, and Tamar Friedlander. “The Relation between Crosstalk and Gene Regulation Form Revisited.” PLOS Computational Biology. Public Library of Science, 2020. https://doi.org/10.1371/journal.pcbi.1007642.
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2019 | Journal Article | IST-REx-ID: 196 |
Lang, Moritz, and Mikhail Shkolnikov. “Harmonic Dynamics of the Abelian Sandpile.” Proceedings of the National Academy of Sciences. National Academy of Sciences, 2019. https://doi.org/10.1073/pnas.1812015116.
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| arXiv
2019 | Conference Paper | IST-REx-ID: 7147
Guet, Calin C, Thomas A Henzinger, Claudia Igler, Tatjana Petrov, and Ali Sezgin. “Transient Memory in Gene Regulation.” In 17th International Conference on Computational Methods in Systems Biology, 11773:155–87. Springer Nature, 2019. https://doi.org/10.1007/978-3-030-31304-3_9.
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2019 | Journal Article | IST-REx-ID: 6465 |
Chassin, Hélène, Marius Müller, Marcel Tigges, Leo Scheller, Moritz Lang, and Martin Fussenegger. “A Modular Degron Library for Synthetic Circuits in Mammalian Cells.” Nature Communications. Springer Nature, 2019. https://doi.org/10.1038/s41467-019-09974-5.
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2019 | Journal Article | IST-REx-ID: 6784 |
Ruess, Jakob, Maros Pleska, Calin C Guet, and Gašper Tkačik. “Molecular Noise of Innate Immunity Shapes Bacteria-Phage Ecologies.” PLoS Computational Biology. Public Library of Science, 2019. https://doi.org/10.1371/journal.pcbi.1007168.
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2019 | Research Data | IST-REx-ID: 7016 |
Tomanek, Isabella. “Data for the Paper ‘Gene Amplification as a Form of Population-Level Gene Expression Regulation.’” IST Austria, 2019. https://doi.org/10.15479/AT:ISTA:7016.
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2019 | Journal Article | IST-REx-ID: 138 |
Nikolic, Nela. “Autoregulation of Bacterial Gene Expression: Lessons from the MazEF Toxin–Antitoxin System.” Current Genetics. Springer, 2019. https://doi.org/10.1007/s00294-018-0879-8.
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2019 | Journal Article | IST-REx-ID: 6717 |
Igler, Claudia, and Stephen T. Abedon. “Commentary: A Host-Produced Quorum-Sensing Autoinducer Controls a Phage Lysis-Lysogeny Decision.” Frontiers in Microbiology. Frontiers, 2019. https://doi.org/10.3389/fmicb.2019.01171.
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2019 | Thesis | IST-REx-ID: 6371 |
Igler, Claudia. “On the Nature of Gene Regulatory Design - The Biophysics of Transcription Factor Binding Shapes Gene Regulation.” IST Austria, 2019. https://doi.org/10.15479/AT:ISTA:6371.
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