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Stephanie Kainrath

Moritz Lang

Isabella Tomanek

Bryan Wu

Nela Nikolic

Kirti Jain

Rok Grah

Calin Guet

Anna Nagy-Staron

Claudia Igler

Tatjana Petrov

Mato Lagator

Tobias Bergmiller

Maria Mateescu

Tiago Paixao

Remy Chait

Maros Pleska



82 Publications

2015 | Journal Article | IST-REx-ID: 1840   OA
Optimal Kullback-Leibler aggregation via information bottleneck
B. Geiger, T. Petrov, G. Kubin, H. Koeppl, IEEE Transactions on Automatic Control 60 (2015) 1010–1022.
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2015 | Conference Paper | IST-REx-ID: 1430   OA
First steps towards a runtime comparison of natural and artificial evolution
T. Paixao, D. Sudholt, J. Heredia, B. Trubenova, in:, Proceedings of the 2015 Annual Conference on Genetic and Evolutionary Computation, ACM, 2015, pp. 1455–1462.
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2015 | Conference Paper | IST-REx-ID: 1835   OA
Model checking gene regulatory networks
M. Giacobbe, C.C. Guet, A. Gupta, T.A. Henzinger, T. Paixao, T. Petrov, 9035 (2015) 469–483.
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2015 | Journal Article | IST-REx-ID: 5749   OA
Adaptation to Parasites and Costs of Parasite Resistance in Mutator and Nonmutator Bacteria
S. Wielgoss, T. Bergmiller, A.M. Bischofberger, A.R. Hall, Molecular Biology and Evolution 33 (2015) 770–782.
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2014 | Journal Article | IST-REx-ID: 1894   OA
Functional and bioinformatics analysis of two Campylobacter jejuni homologs of the thiol-disulfide oxidoreductase, DsbA
A. Grabowska, E. Wywiał, S. Dunin Horkawicz, A. Łasica, M. Wösten, A.A. Nagy-Staron, R. Godlewska, K. Bocian Ostrzycka, K. Pieńkowska, P. Łaniewski, J. Bujnicki, J. Van Putten, E. Jagusztyn Krynicka, PLoS One 9 (2014).
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2014 | Journal Article | IST-REx-ID: 2056   OA
Markov chain aggregation and its applications to combinatorial reaction networks
A. Ganguly, T. Petrov, H. Koeppl, Journal of Mathematical Biology 69 (2014) 767–797.
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2014 | Journal Article | IST-REx-ID: 2083
Role of sex and migration in adaptation to sink environments
M. Lagator, A. Morgan, P. Neve, N. Colegrave, Evolution 68 (2014) 2296–2305.
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2014 | Journal Article | IST-REx-ID: 1913
Patterns of hippocampal tau pathology differentiate neurodegenerative dementias
I. Milenković, T. Petrov, G. Kovács, Dementia and Geriatric Cognitive Disorders 38 (2014) 375–388.
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2014 | Journal Article | IST-REx-ID: 2036   OA
Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses
M. Lagator, N. Colegrave, P. Neve, Proceedings of the Royal Society of London Series B Biological Sciences 281 (2014).
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2013 | Conference Paper | IST-REx-ID: 2718   OA
Can quantitative and population genetics help us understand evolutionary computation?
N.H. Barton, T. Paixao, in:, Proceedings of the 15th Annual Conference on Genetic and Evolutionary Computation, ACM, 2013, pp. 1573–1580.
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2013 | Journal Article | IST-REx-ID: 2720   OA
Accumulation of spontaneous mutations in the ciliate Tetrahymena thermophila
H. Long, T. Paixao, R. Azevedo, R. Zufall, Genetics 195 (2013) 527–540.
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2013 | Journal Article | IST-REx-ID: 499
Dynamic persistence of antibiotic-stressed mycobacteria
Y. Wakamoto, N. Dhar, R.P. Chait, K. Schneider, F. Signorino Gelo, S. Leibler, J. Mckinney, Science 339 (2013) 91–95.
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2013 | Conference Paper | IST-REx-ID: 2719
A variance decomposition approach to the analysis of genetic algorithms
T. Paixao, N.H. Barton, in:, Proceedings of the 15th Annual Conference on Genetic and Evolutionary Computation, ACM, 2013, pp. 845–852.
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2013 | Journal Article | IST-REx-ID: 2853   OA
Altruism can evolve when relatedness is low: Evidence from bacteria committing suicide upon phage infection
D. Refardt, T. Bergmiller, R. Kümmerli, Proceedings of the Royal Society of London Series B Biological Sciences 280 (2013).
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2012 | Journal Article | IST-REx-ID: 2943   OA
Variation of the folding and dynamics of the Escherichia coli chromosome with growth conditions
N. Hadizadeh Yazdi, C.C. Guet, R. Johnson, J. Marko, Molecular Microbiology 86 (2012) 1318–1333.
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2012 | Conference Paper | IST-REx-ID: 3136
Delayed continuous time Markov chains for genetic regulatory circuits
C.C. Guet, A. Gupta, T.A. Henzinger, M. Mateescu, A. Sezgin, in:, Springer, 2012, pp. 294–309.
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2012 | Journal Article | IST-REx-ID: 2302
The propagation approach for computing biochemical reaction networks
T.A. Henzinger, M. Mateescu, IEEE ACM Transactions on Computational Biology and Bioinformatics 10 (2012) 310–322.
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2012 | Journal Article | IST-REx-ID: 3130   OA
Patterns of evolutionary conservation of essential genes correlate with their compensability
T. Bergmiller, M. Ackermann, O. Silander, PLoS Genetics 8 (2012).
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2011 | Journal Article | IST-REx-ID: 6496   OA
Noise underlies switching behavior of the bacterial flagellum
H. Park, P. Oikonomou, C.C. Guet, P. Cluzel, Biophysical Journal 101 (2011) 2336–2340.
View | DOI | Download (ext.) | PubMed | Europe PMC
 
2010 | Conference Paper | IST-REx-ID: 3719   OA
Lumpability abstractions of rule-based systems
J. Feret, T.A. Henzinger, H. Koeppl, T. Petrov, in:, Open Publishing Association, 2010, pp. 142–161.
View | Files available | arXiv
 

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