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88 Publications

2017 | Journal Article | IST-REx-ID: 696 | OA
Lukacisinova, M., Novak, S., & Paixao, T. (2017). Stress induced mutagenesis: Stress diversity facilitates the persistence of mutator genes. PLoS Computational Biology, 13(7). https://doi.org/10.1371/journal.pcbi.1005609
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2017 | Journal Article | IST-REx-ID: 704 | OA
Steinrück, M., & Guet, C. C. (2017). Complex chromosomal neighborhood effects determine the adaptive potential of a gene under selection. ELife, 6. https://doi.org/10.7554/eLife.25100
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2017 | Journal Article | IST-REx-ID: 954 | OA
Lagator, M., Paixao, T., Barton, N. H., Bollback, J. P., & Guet, C. C. (2017). On the mechanistic nature of epistasis in a canonical cis-regulatory element. ELife, 6. https://doi.org/10.7554/eLife.25192
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2017 | Journal Article | IST-REx-ID: 1336 | OA
Paixao, T., Pérez Heredia, J., Sudholt, D., & Trubenova, B. (2017). Towards a runtime comparison of natural and artificial evolution. Algorithmica, 78(2), 681–713. https://doi.org/10.1007/s00453-016-0212-1
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2017 | Journal Article | IST-REx-ID: 1351 | OA
Giacobbe, M., Guet, C. C., Gupta, A., Henzinger, T. A., Paixao, T., & Petrov, T. (2017). Model checking the evolution of gene regulatory networks. Acta Informatica, 54(8), 765–787. https://doi.org/10.1007/s00236-016-0278-x
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2017 | Journal Article | IST-REx-ID: 1007 | OA
Lang, M., & Sontag, E. (2017). Zeros of nonlinear systems with input invariances. Automatica, 81C, 46–55. https://doi.org/10.1016/j.automatica.2017.03.030
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2017 | Journal Article | IST-REx-ID: 1028 | OA
Kainrath, S., Stadler, M., Gschaider-Reichhart, E., Distel, M., & Janovjak, H. L. (2017). Green-light-induced inactivation of receptor signaling using cobalamin-binding domains. Angewandte Chemie - International Edition, 56(16), 4608–4611. https://doi.org/10.1002/anie.201611998
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2017 | Journal Article | IST-REx-ID: 1084
Fang, C., Nagy-Staron, A. A., Grafe, M., Heermann, R., Jung, K., Gebhard, S., & Mascher, T. (2017). Insulation and wiring specificity of BceR like response regulators and their target promoters in Bacillus subtilis. Molecular Microbiology, 104(1), 16–31. https://doi.org/10.1111/mmi.13597
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2016 | Conference Paper | IST-REx-ID: 1220 | OA
Mikić, G., Stoll, A., Bevirt, J., Grah, R., & Moore, M. (2016). Fuselage boundary layer ingestion propulsion applied to a thin haul commuter aircraft for optimal efficiency (pp. 1–19). Presented at the AIAA: Aviation Technology, Integration, and Operations Conference, Washington, D.C., USA: AIAA. https://doi.org/10.2514/6.2016-3764
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2016 | Conference Paper | IST-REx-ID: 1234 | OA
Daca, P., Henzinger, T. A., Kretinsky, J., & Petrov, T. (2016). Faster statistical model checking for unbounded temporal properties (Vol. 9636, pp. 112–129). Presented at the TACAS: Tools and Algorithms for the Construction and Analysis of Systems, Eindhoven, The Netherlands: Springer. https://doi.org/10.1007/978-3-662-49674-9_7
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2016 | Journal Article | IST-REx-ID: 1243
Pleska, M., Qian, L., Okura, R., Bergmiller, T., Wakamoto, Y., Kussell, E., & Guet, C. C. (2016). Bacterial autoimmunity due to a restriction-modification system. Current Biology, 26(3), 404–409. https://doi.org/10.1016/j.cub.2015.12.041
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2016 | Journal Article | IST-REx-ID: 1250 | OA
Boehm, A., Arnoldini, M., Bergmiller, T., Röösli, T., Bigosch, C., & Ackermann, M. (2016). Genetic manipulation of glycogen allocation affects replicative lifespan in E coli. PLoS Genetics, 12(4). https://doi.org/10.1371/journal.pgen.1005974
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2016 | Journal Article | IST-REx-ID: 1290 | OA
Stone, L., Baym, M., Lieberman, T., Chait, R. P., Clardy, J., & Kishony, R. (2016). Compounds that select against the tetracycline-resistance efflux pump. Nature Chemical Biology, 12(11), 902–904. https://doi.org/10.1038/nchembio.2176
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2016 | Conference Paper | IST-REx-ID: 1320
Lang, M., & Sontag, E. (2016). Scale-invariant systems realize nonlinear differential operators (Vol. 2016–July). Presented at the ACC: American Control Conference, Boston, MA, USA: IEEE. https://doi.org/10.1109/ACC.2016.7526722
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2016 | Journal Article | IST-REx-ID: 1332 | OA
Chait, R. P., Palmer, A., Yelin, I., & Kishony, R. (2016). Pervasive selection for and against antibiotic resistance in inhomogeneous multistress environments. Nature Communications, 7. https://doi.org/10.1038/ncomms10333
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2016 | Journal Article | IST-REx-ID: 1342 | OA
Baym, M., Lieberman, T., Kelsic, E., Chait, R. P., Gross, R., Yelin, I., & Kishony, R. (2016). Spatiotemporal microbial evolution on antibiotic landscapes. Science, 353(6304), 1147–1151. https://doi.org/10.1126/science.aag0822
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2016 | Conference Paper | IST-REx-ID: 1349 | OA
Oliveto, P., Paixao, T., Heredia, J., Sudholt, D., & Trubenova, B. (2016). When non-elitism outperforms elitism for crossing fitness valleys. In Proceedings of the Genetic and Evolutionary Computation Conference 2016 (pp. 1163–1170). Denver, CO, USA: ACM. https://doi.org/10.1145/2908812.2908909
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2016 | Journal Article | IST-REx-ID: 1358 | OA
Friedlander, T., Prizak, R., Guet, C. C., Barton, N. H., & Tkačik, G. (2016). Intrinsic limits to gene regulation by global crosstalk. Nature Communications, 7. https://doi.org/10.1038/ncomms12307
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2016 | Journal Article | IST-REx-ID: 1359 | OA
Paixao, T., & Barton, N. H. (2016). The effect of gene interactions on the long-term response to selection. PNAS, 113(16), 4422–4427. https://doi.org/10.1073/pnas.1518830113
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2016 | Journal Article | IST-REx-ID: 1427 | OA
Lagator, M., Igler, C., Moreno, A., Guet, C. C., & Bollback, J. P. (2016). Epistatic interactions in the arabinose cis-regulatory element. Molecular Biology and Evolution, 33(3), 761–769. https://doi.org/10.1093/molbev/msv269
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