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88 Publications

2014 | Journal Article | IST-REx-ID: 2036 | OA
Lagator, Mato, Nick Colegrave, and Paul Neve. “Selection History and Epistatic Interactions Impact Dynamics of Adaptation to Novel Environmental Stresses.” Proceedings of the Royal Society of London Series B Biological Sciences 281, no. 1794 (2014). https://doi.org/10.1098/rspb.2014.1679.
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2014 | Journal Article | IST-REx-ID: 2056 | OA
Ganguly, Arnab, Tatjana Petrov, and Heinz Koeppl. “Markov Chain Aggregation and Its Applications to Combinatorial Reaction Networks.” Journal of Mathematical Biology 69, no. 3 (2014): 767–97. https://doi.org/10.1007/s00285-013-0738-7.
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2014 | Journal Article | IST-REx-ID: 2083 | OA
Lagator, Mato, Andrew Morgan, Paul Neve, and Nick Colegrave. “Role of Sex and Migration in Adaptation to Sink Environments.” Evolution 68, no. 8 (2014): 2296–2305. https://doi.org/10.1111/evo.12440.
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2014 | Journal Article | IST-REx-ID: 1894 | OA
Grabowska, Anna, Ewa Wywiał, Stanislaw Dunin Horkawicz, Anna Łasica, Marc Wösten, Anna A Nagy-Staron, Renata Godlewska, et al. “Functional and Bioinformatics Analysis of Two Campylobacter Jejuni Homologs of the Thiol-Disulfide Oxidoreductase, DsbA.” PLoS One 9, no. 9 (2014). https://doi.org/10.1371/journal.pone.0106247.
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2014 | Journal Article | IST-REx-ID: 1913 | OA
Milenković, Ivan, Tatjana Petrov, and Gábor Kovács. “Patterns of Hippocampal Tau Pathology Differentiate Neurodegenerative Dementias.” Dementia and Geriatric Cognitive Disorders 38, no. 5–6 (2014): 375–88. https://doi.org/10.1159/000365548.
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2013 | Journal Article | IST-REx-ID: 499
Wakamoto, Yurichi, Neraaj Dhar, Remy P Chait, Katrin Schneider, François Signorino Gelo, Stanislas Leibler, and John Mckinney. “Dynamic Persistence of Antibiotic-Stressed Mycobacteria.” Science 339, no. 6115 (2013): 91–95. https://doi.org/10.1126/science.1229858.
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2013 | Conference Paper | IST-REx-ID: 2718 | OA
Barton, Nicholas H, and Tiago Paixao. “Can Quantitative and Population Genetics Help Us Understand Evolutionary Computation?” In Proceedings of the 15th Annual Conference on Genetic and Evolutionary Computation, 1573–80. ACM, 2013. https://doi.org/10.1145/2463372.2463568.
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2013 | Conference Paper | IST-REx-ID: 2719
Paixao, Tiago, and Nicholas H Barton. “A Variance Decomposition Approach to the Analysis of Genetic Algorithms.” In Proceedings of the 15th Annual Conference on Genetic and Evolutionary Computation, 845–52. ACM, 2013. https://doi.org/10.1145/2463372.2463470.
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2013 | Journal Article | IST-REx-ID: 2720 | OA
Long, Hongan, Tiago Paixao, Ricardo Azevedo, and Rebecca Zufall. “Accumulation of Spontaneous Mutations in the Ciliate Tetrahymena Thermophila.” Genetics 195, no. 2 (2013): 527–40. https://doi.org/10.1534/genetics.113.153536.
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2013 | Journal Article | IST-REx-ID: 2853 | OA
Refardt, Dominik, Tobias Bergmiller, and Rolf Kümmerli. “Altruism Can Evolve When Relatedness Is Low: Evidence from Bacteria Committing Suicide upon Phage Infection.” Proceedings of the Royal Society of London Series B Biological Sciences 280, no. 1759 (2013). https://doi.org/10.1098/rspb.2012.3035.
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2012 | Journal Article | IST-REx-ID: 2302
Henzinger, Thomas A, and Maria Mateescu. “The Propagation Approach for Computing Biochemical Reaction Networks.” IEEE ACM Transactions on Computational Biology and Bioinformatics 10, no. 2 (2012): 310–22. https://doi.org/10.1109/TCBB.2012.91.
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2012 | Journal Article | IST-REx-ID: 2943 | OA
Hadizadeh Yazdi, Nastaran, Calin C Guet, Reid Johnson, and John Marko. “Variation of the Folding and Dynamics of the Escherichia Coli Chromosome with Growth Conditions.” Molecular Microbiology 86, no. 6 (2012): 1318–33. https://doi.org/10.1111/mmi.12071.
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2012 | Journal Article | IST-REx-ID: 3130 | OA
Bergmiller, Tobias, Martin Ackermann, and Olin Silander. “Patterns of Evolutionary Conservation of Essential Genes Correlate with Their Compensability.” PLoS Genetics 8, no. 6 (2012). https://doi.org/10.1371/journal.pgen.1002803.
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2012 | Conference Paper | IST-REx-ID: 3136
Guet, Calin C, Ashutosh Gupta, Thomas A Henzinger, Maria Mateescu, and Ali Sezgin. “Delayed Continuous Time Markov Chains for Genetic Regulatory Circuits,” 7358:294–309. Springer, 2012. https://doi.org/10.1007/978-3-642-31424-7_24.
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2011 | Journal Article | IST-REx-ID: 6496 | OA
Park, Heungwon, Panos Oikonomou, Calin C Guet, and Philippe Cluzel. “Noise Underlies Switching Behavior of the Bacterial Flagellum.” Biophysical Journal 101, no. 10 (2011): 2336–40. https://doi.org/10.1016/j.bpj.2011.09.040.
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2010 | Conference Paper | IST-REx-ID: 3719 | OA
Feret, Jérôme, Thomas A Henzinger, Heinz Koeppl, and Tatjana Petrov. “Lumpability Abstractions of Rule-Based Systems,” 40:142–61. Open Publishing Association, 2010.
View | Files available | arXiv
 
2010 | Conference Paper | IST-REx-ID: 3847 | OA
Didier, Frédéric, Thomas A Henzinger, Maria Mateescu, and Verena Wolf. “SABRE: A Tool for the Stochastic Analysis of Biochemical Reaction Networks,” 193–94. IEEE, 2010. https://doi.org/10.1109/QEST.2010.33.
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2009 | Conference Paper | IST-REx-ID: 3843 | OA
Didier, Frédéric, Thomas A Henzinger, Maria Mateescu, and Verena Wolf. “Fast Adaptive Uniformization of the Chemical Master Equation,” 4:118–27. IEEE, 2009. https://doi.org/10.1109/HiBi.2009.23.
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