Please note that LibreCat no longer supports Internet Explorer versions 8 or 9 (or earlier).

We recommend upgrading to the latest Internet Explorer, Google Chrome, or Firefox.




120 Publications

2022 | Journal Article | IST-REx-ID: 10736 | OA
Lagator, Mato, et al. “Predicting Bacterial Promoter Function and Evolution from Random Sequences.” ELife, vol. 11, e64543, eLife Sciences Publications, 2022, doi:10.7554/eLife.64543.
View | Files available | DOI | PubMed | Europe PMC
 
2022 | Journal Article | IST-REx-ID: 10812
Römhild, Roderich, et al. “The Physiology and Genetics of Bacterial Responses to Antibiotic Combinations.” Nature Reviews Microbiology, Springer Nature, 2022, doi:10.1038/s41579-022-00700-5.
View | DOI
 
2022 | Journal Article | IST-REx-ID: 10939 | OA
Davidović, Anđela, et al. “Parameter Inference for Stochastic Biochemical Models from Perturbation Experiments Parallelised at the Single Cell Level.” PLoS Computational Biology, vol. 18, no. 3, e1009950, Public Library of Science, 2022, doi:10.1371/journal.pcbi.1009950.
View | Files available | DOI
 
2022 | Journal Article | IST-REx-ID: 11339 | OA
Glover, Georgina, et al. “Nutrient and Salt Depletion Synergistically Boosts Glucose Metabolism in Individual Escherichia Coli Cells.” Communications Biology, vol. 5, 385, Springer Nature, 2022, doi:10.1038/s42003-022-03336-6.
View | Files available | DOI | PubMed | Europe PMC
 
2021 | Journal Article | IST-REx-ID: 9046 | OA
Römhild, Roderich, and Dan I. Andersson. “Mechanisms and Therapeutic Potential of Collateral Sensitivity to Antibiotics.” PLoS Pathogens, vol. 17, no. 1, e1009172, Public Library of Science, 2021, doi:10.1371/journal.ppat.1009172.
View | Files available | DOI | PubMed | Europe PMC
 
2021 | Journal Article | IST-REx-ID: 9283 | OA
Nagy-Staron, Anna A., et al. “Local Genetic Context Shapes the Function of a Gene Regulatory Network.” ELife, vol. 10, e65993, eLife Sciences Publications, 2021, doi:10.7554/elife.65993.
View | Files available | DOI
 
2021 | Thesis | IST-REx-ID: 10307
Tomasek, Kathrin. Pathogenic Escherichia Coli Hijack the Host Immune Response. IST Austria, 2021, doi:10.15479/at:ista:10307.
View | Files available | DOI
 
2021 | Preprint | IST-REx-ID: 10316 | OA
Tomasek, Kathrin, et al. “Type 1 Piliated Uropathogenic Escherichia Coli Hijack the Host Immune Response by Binding to CD14.” BioRxiv, Cold Spring Harbor Laboratory, doi:10.1101/2021.10.18.464770.
View | Files available | DOI | Download Preprint (ext.)
 
2021 | Journal Article | IST-REx-ID: 9746 | OA
Batra, Aditi, et al. “High Potency of Sequential Therapy with Only Beta-Lactam Antibiotics.” ELife, vol. 10, e68876, eLife Sciences Publications, 2021, doi:10.7554/elife.68876.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
2021 | Journal Article | IST-REx-ID: 9822 | OA
Zisis, Themistoklis, et al. “Sequential and Switchable Patterning for Studying Cellular Processes under Spatiotemporal Control.” ACS Applied Materials and Interfaces, vol. 13, no. 30, American Chemical Society, 2021, pp. 35545–35560, doi:10.1021/acsami.1c09850.
View | Files available | DOI | PubMed | Europe PMC
 
2021 | Journal Article | IST-REx-ID: 9647 | OA
Petrov, Tatjana, et al. “Long Lived Transients in Gene Regulation.” Theoretical Computer Science, vol. 893, Elsevier, 2021, pp. 1–16, doi:10.1016/j.tcs.2021.05.023.
View | Files available | DOI
 
2021 | Journal Article | IST-REx-ID: 10363 | OA
Lee, Jungmin, et al. “Rational Engineering of an Erythropoietin Fusion Protein to Treat Hypoxia.” Protein Engineering, Design and Selection, vol. 34, gzab025, Oxford University Press, 2021, doi:10.1093/protein/gzab025.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
2020 | Thesis | IST-REx-ID: 8155 | OA
Grah, Rok. Gene Regulation across Scales – How Biophysical Constraints Shape Evolution. IST Austria, 2020, doi:10.15479/AT:ISTA:8155.
View | Files available | DOI
 
2020 | Book Chapter | IST-REx-ID: 8173
Kainrath, Stephanie, and Harald L. Janovjak. “Design and Application of Light-Regulated Receptor Tyrosine Kinases.” Photoswitching Proteins, edited by Dominik Niopek, vol. 2173, Springer Nature, 2020, pp. 233–46, doi:10.1007/978-1-0716-0755-8_16.
View | DOI
 
2020 | Research Data | IST-REx-ID: 7383 | OA
Grah, Rok. Matlab Scripts for the Paper: Gene Amplification as a Form of Population-Level Gene Expression Regulation. IST Austria, 2020, doi:10.15479/AT:ISTA:7383.
View | Files available | DOI
 
2020 | Journal Article | IST-REx-ID: 7569 | OA
Grah, Rok, and Tamar Friedlander. “The Relation between Crosstalk and Gene Regulation Form Revisited.” PLOS Computational Biology, vol. 16, no. 2, e1007642, Public Library of Science, 2020, doi:10.1371/journal.pcbi.1007642.
View | Files available | DOI
 
2020 | Preprint | IST-REx-ID: 7675 | OA
Grah, Rok, et al. “Normative Models of Enhancer Function.” BioRxiv, Cold Spring Harbor Laboratory, 2020, doi:10.1101/2020.04.08.029405.
View | Files available | DOI | Download Preprint (ext.)
 
2020 | Research Data | IST-REx-ID: 8951 | OA
Nagy-Staron, Anna A. Sequences of Gene Regulatory Network Permutations for the Article “Local Genetic Context Shapes the Function of a Gene Regulatory Network.” IST Austria, 2020, doi:10.15479/AT:ISTA:8951.
View | Files available | DOI
 
2020 | Thesis | IST-REx-ID: 7680 | OA
Kainrath, Stephanie. Synthetic Tools for Optogenetic and Chemogenetic Inhibition of Cellular Signals. IST Austria, 2020, doi:10.15479/AT:ISTA:7680.
View | Files available | DOI
 
2020 | Journal Article | IST-REx-ID: 7652 | OA
Tomanek, Isabella, et al. “Gene Amplification as a Form of Population-Level Gene Expression Regulation.” Nature Ecology & Evolution, vol. 4, no. 4, Springer Nature, 2020, pp. 612–25, doi:10.1038/s41559-020-1132-7.
View | Files available | DOI
 
2020 | Thesis | IST-REx-ID: 8653 | OA
Tomanek, Isabella. The Evolution of Gene Expression by Copy Number and Point Mutations. IST Austria, 2020, doi:10.15479/AT:ISTA:8653.
View | Files available | DOI
 
2019 | Research Data | IST-REx-ID: 7016 | OA
Tomanek, Isabella. Data for the Paper “Gene Amplification as a Form of Population-Level Gene Expression Regulation.” IST Austria, 2019, doi:10.15479/AT:ISTA:7016.
View | Files available | DOI
 
2019 | Conference Paper | IST-REx-ID: 7147
Guet, Calin C., et al. “Transient Memory in Gene Regulation.” 17th International Conference on Computational Methods in Systems Biology, vol. 11773, Springer Nature, 2019, pp. 155–87, doi:10.1007/978-3-030-31304-3_9.
View | DOI
 
2019 | Journal Article | IST-REx-ID: 6465 | OA
Chassin, Hélène, et al. “A Modular Degron Library for Synthetic Circuits in Mammalian Cells.” Nature Communications, vol. 10, no. 1, 2013, Springer Nature, 2019, doi:10.1038/s41467-019-09974-5.
View | Files available | DOI
 
2019 | Journal Article | IST-REx-ID: 6717 | OA
Igler, Claudia, and Stephen T. Abedon. “Commentary: A Host-Produced Quorum-Sensing Autoinducer Controls a Phage Lysis-Lysogeny Decision.” Frontiers in Microbiology, vol. 10, 1171, Frontiers, 2019, doi:10.3389/fmicb.2019.01171.
View | Files available | DOI
 
2019 | Journal Article | IST-REx-ID: 6784 | OA
Ruess, Jakob, et al. “Molecular Noise of Innate Immunity Shapes Bacteria-Phage Ecologies.” PLoS Computational Biology, vol. 15, no. 7, e1007168, Public Library of Science, 2019, doi:10.1371/journal.pcbi.1007168.
View | Files available | DOI
 
2019 | Journal Article | IST-REx-ID: 138 | OA
Nikolic, Nela. “Autoregulation of Bacterial Gene Expression: Lessons from the MazEF Toxin–Antitoxin System.” Current Genetics, vol. 65, no. 1, Springer, 2019, pp. 133–38, doi:10.1007/s00294-018-0879-8.
View | Files available | DOI
 
2019 | Research Data Reference | IST-REx-ID: 9786
Ruess, Jakob, et al. Supporting Text and Results. Public Library of Science, 2019, doi:10.1371/journal.pcbi.1007168.s001.
View | Files available | DOI
 
2019 | Journal Article | IST-REx-ID: 196 | OA
Lang, Moritz, and Mikhail Shkolnikov. “Harmonic Dynamics of the Abelian Sandpile.” Proceedings of the National Academy of Sciences, vol. 116, no. 8, National Academy of Sciences, 2019, pp. 2821–30, doi:10.1073/pnas.1812015116.
View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC | arXiv
 
2019 | Thesis | IST-REx-ID: 6371 | OA
Igler, Claudia. On the Nature of Gene Regulatory Design - The Biophysics of Transcription Factor Binding Shapes Gene Regulation. IST Austria, 2019, doi:10.15479/AT:ISTA:6371.
View | Files available | DOI
 
2018 | Journal Article | IST-REx-ID: 305
Misun, Patrick, et al. “Fabrication and Operation of Microfluidic Hanging Drop Networks.” Methods in Molecular Biology, vol. 1771, Springer, 2018, pp. 183–202, doi:10.1007/978-1-4939-7792-5_15.
View | DOI
 
2018 | Journal Article | IST-REx-ID: 82 | OA
Chaudhry, Waqas, et al. “Leaky Resistance and the Conditions for the Existence of Lytic Bacteriophage.” PLoS Biology, vol. 16, no. 8, 2005971, Public Library of Science, 2018, doi:10.1371/journal.pbio.2005971.
View | Files available | DOI
 
2018 | Journal Article | IST-REx-ID: 457
Pleska, Maros, et al. “Phage-Host Population Dynamics Promotes Prophage Acquisition in Bacteria with Innate Immunity.” Nature Ecology and Evolution, vol. 2, no. 2, Springer Nature, 2018, pp. 359–66, doi:10.1038/s41559-017-0424-z.
View | Files available | DOI
 
2018 | Journal Article | IST-REx-ID: 503
Tomasek, Kathrin, et al. “Lack of Cations in Flow Cytometry Buffers Affect Fluorescence Signals by Reducing Membrane Stability and Viability of Escherichia Coli Strains.” Journal of Biotechnology, vol. 268, Elsevier, 2018, pp. 40–52, doi:10.1016/j.jbiotec.2018.01.008.
View | DOI
 
2018 | Research Data | IST-REx-ID: 5569 | OA
Bergmiller, Tobias, and Nela Nikolic. Time-Lapse Microscopy Data. IST Austria, 2018, doi:10.15479/AT:ISTA:74.
View | Files available | DOI
 
2018 | Journal Article | IST-REx-ID: 5984 | OA
Morri, Maurizio, et al. “Optical Functionalization of Human Class A Orphan G-Protein-Coupled Receptors.” Nature Communications, vol. 9, no. 1, 1950, Springer Nature, 2018, doi:10.1038/s41467-018-04342-1.
View | Files available | DOI
 
2018 | Journal Article | IST-REx-ID: 723 | OA
Oliveto, Pietro, et al. “How to Escape Local Optima in Black Box Optimisation When Non Elitism Outperforms Elitism.” Algorithmica, vol. 80, no. 5, Springer, 2018, pp. 1604–33, doi:10.1007/s00453-017-0369-2.
View | Files available | DOI
 
2018 | Journal Article | IST-REx-ID: 161 | OA
De Martino, Daniele, et al. “Statistical Mechanics for Metabolic Networks during Steady State Growth.” Nature Communications, vol. 9, no. 1, 2988, Springer Nature, 2018, doi:10.1038/s41467-018-05417-9.
View | Files available | DOI
 
2018 | Journal Article | IST-REx-ID: 19 | OA
Palmer, Adam, et al. “Nonoptimal Gene Expression Creates Latent Potential for Antibiotic Resistance.” Molecular Biology and Evolution, vol. 35, no. 11, NLM , 2018, pp. 2669–84, doi:10.1093/molbev/msy163.
View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
2018 | Research Data Reference | IST-REx-ID: 9810
Chaudhry, Waqas, et al. Numerical Data Used in Figures. Public Library of Science, 2018, doi:10.1371/journal.pbio.2005971.s008.
View | Files available | DOI
 
2018 | Journal Article | IST-REx-ID: 438 | OA
Nikolic, Nela, et al. “Autoregulation of MazEF Expression Underlies Growth Heterogeneity in Bacterial Populations.” Nucleic Acids Research, vol. 46, no. 6, Oxford University Press, 2018, pp. 2918–31, doi:10.1093/nar/gky079.
View | Files available | DOI
 
2018 | Journal Article | IST-REx-ID: 67 | OA
Igler, Claudia, et al. “Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring.” Nature Ecology and Evolution, vol. 2, no. 10, Nature Publishing Group, 2018, pp. 1633–43, doi:10.1038/s41559-018-0651-y.
View | Files available | DOI
 
2018 | Research Data | IST-REx-ID: 5585 | OA
Igler, Claudia, et al. Data for the Paper Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring. IST Austria, 2018, doi:10.15479/AT:ISTA:108.
View | Files available | DOI
 
2018 | Thesis | IST-REx-ID: 26 | OA
Steinrück, Magdalena. The Influence of Sequence Context on the Evolution of Bacterial Gene Expression. IST Austria, 2018, doi:10.15479/AT:ISTA:th1059.
View | Files available | DOI
 
2017 | Journal Article | IST-REx-ID: 538 | OA
Kainrath, Stephanie, et al. “Grünlicht-Induzierte Rezeptorinaktivierung Durch Cobalamin-Bindende Domänen.” Angewandte Chemie, vol. 129, no. 16, Wiley, 2017, pp. 4679–82, doi:10.1002/ange.201611998.
View | Files available | DOI
 
2017 | Journal Article | IST-REx-ID: 541 | OA
Nikolic, Nela, et al. “Cell-to-Cell Variation and Specialization in Sugar Metabolism in Clonal Bacterial Populations.” PLoS Genetics, vol. 13, no. 12, e1007122, Public Library of Science, 2017, doi:10.1371/journal.pgen.1007122.
View | Files available | DOI
 
2017 | Research Data | IST-REx-ID: 5560 | OA
Bergmiller, Tobias, et al. Biased Partitioning of the Multi-Drug Efflux Pump AcrAB-TolC Underlies Long-Lived Phenotypic Heterogeneity. IST Austria, 2017, doi:doi:10.15479/AT:ISTA:53.
View | Files available | DOI
 
2017 | Research Data | IST-REx-ID: 5564 | OA
Steinrück, Magdalena, and Calin C. Guet. Fastq Files for “Complex Chromosomal Neighborhood Effects Determine the Adaptive Potential of a Gene under Selection.” IST Austria, 2017, doi:10.15479/AT:ISTA:65.
View | Files available | DOI
 
2017 | Journal Article | IST-REx-ID: 570 | OA
Lagator, Mato, et al. “Regulatory Network Structure Determines Patterns of Intermolecular Epistasis.” ELife, vol. 6, e28921, eLife Sciences Publications, 2017, doi:10.7554/eLife.28921.
View | Files available | DOI
 
2017 | Journal Article | IST-REx-ID: 1084
Fang, Chong, et al. “Insulation and Wiring Specificity of BceR like Response Regulators and Their Target Promoters in Bacillus Subtilis.” Molecular Microbiology, vol. 104, no. 1, Wiley-Blackwell, 2017, pp. 16–31, doi:10.1111/mmi.13597.
View | DOI
 

Search

Filter Publications