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88 Publications

2020 | Research Data | IST-REx-ID: 7383 | OA
Grah R. Matlab Scripts for the Paper: Gene Amplification as a Form of Population-Level Gene Expression Regulation. IST Austria; 2020. doi:10.15479/AT:ISTA:7383
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2020 | Journal Article | IST-REx-ID: 7569 | OA
Grah R, Friedlander T. The relation between crosstalk and gene regulation form revisited. PLOS Computational Biology. 2020;16(2). doi:10.1371/journal.pcbi.1007642
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2020 | Journal Article | IST-REx-ID: 7652
Tomanek I, Grah R, Lagator M, et al. Gene amplification as a form of population-level gene expression regulation. Nature Ecology & Evolution. 2020;4(4):612-625. doi:10.1038/s41559-020-1132-7
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2020 | Preprint | IST-REx-ID: 7675 | OA
Grah R, Zoller B, Tkačik G. Normative models of enhancer function. bioRxiv. 2020.
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2020 | Thesis | IST-REx-ID: 7680
Kainrath S. Synthetic Tools for Optogenetic and Chemogenetic Inhibition of Cellular Signals. IST Austria; 2020. doi:10.15479/AT:ISTA:7680
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2020 | Thesis | IST-REx-ID: 8155 | OA
Grah R. Gene Regulation across Scales – How Biophysical Constraints Shape Evolution. IST Austria; 2020. doi:10.15479/AT:ISTA:8155
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2020 | Book Chapter | IST-REx-ID: 8173
Kainrath S, Janovjak HL. Design and application of light-regulated receptor tyrosine kinases. In: Niopek D, ed. Photoswitching Proteins. Vol 2173. MIMB. Springer Nature; 2020:233-246. doi:10.1007/978-1-0716-0755-8_16
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2019 | Conference Paper | IST-REx-ID: 7147
Guet CC, Henzinger TA, Igler C, Petrov T, Sezgin A. Transient memory in gene regulation. In: 17th International Conference on Computational Methods in Systems Biology. Vol 11773. Springer Nature; 2019:155-187. doi:10.1007/978-3-030-31304-3_9
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2019 | Thesis | IST-REx-ID: 6371 | OA
Igler C. On the Nature of Gene Regulatory Design - The Biophysics of Transcription Factor Binding Shapes Gene Regulation. IST Austria; 2019. doi:10.15479/AT:ISTA:6371
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2019 | Journal Article | IST-REx-ID: 6465 | OA
Chassin H, Müller M, Tigges M, Scheller L, Lang M, Fussenegger M. A modular degron library for synthetic circuits in mammalian cells. Nature Communications. 2019;10(1). doi:10.1038/s41467-019-09974-5
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2019 | Journal Article | IST-REx-ID: 6717 | OA
Igler C, Abedon ST. Commentary: A host-produced quorum-sensing autoinducer controls a phage lysis-lysogeny decision. Frontiers in Microbiology. 2019;10. doi:10.3389/fmicb.2019.01171
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2019 | Journal Article | IST-REx-ID: 6784 | OA
Ruess J, Pleska M, Guet CC, Tkačik G. Molecular noise of innate immunity shapes bacteria-phage ecologies. PLoS Computational Biology. 2019;15(7). doi:10.1371/journal.pcbi.1007168
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2019 | Research Data | IST-REx-ID: 7016 | OA
Tomanek I. Data for the Paper “Gene Amplification as a Form of Population-Level Gene Expression Regulation.” IST Austria; 2019. doi:10.15479/AT:ISTA:7016
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2019 | Journal Article | IST-REx-ID: 196 | OA
Lang M, Shkolnikov M. Harmonic dynamics of the Abelian sandpile. Proceedings of the National Academy of Sciences. 2019;116(8):2821-2830. doi:10.1073/pnas.1812015116
View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC | arXiv
 
2019 | Journal Article | IST-REx-ID: 138 | OA
Nikolic N. Autoregulation of bacterial gene expression: lessons from the MazEF toxin–antitoxin system. Current Genetics. 2019;65(1):133-138. doi:10.1007/s00294-018-0879-8
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2018 | Thesis | IST-REx-ID: 26 | OA
Steinrück M. The Influence of Sequence Context on the Evolution of Bacterial Gene Expression. IST Austria; 2018. doi:10.15479/AT:ISTA:th1059
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2018 | Journal Article | IST-REx-ID: 723 | OA
Oliveto P, Paixao T, Pérez Heredia J, Sudholt D, Trubenova B. How to escape local optima in black box optimisation when non elitism outperforms elitism. Algorithmica. 2018;80(5):1604-1633. doi:10.1007/s00453-017-0369-2
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2018 | Journal Article | IST-REx-ID: 438 | OA
Nikolic N, Bergmiller T, Vandervelde A, Albanese T, Gelens L, Moll I. Autoregulation of mazEF expression underlies growth heterogeneity in bacterial populations. Nucleic Acids Research. 2018;46(6):2918-2931. doi:10.1093/nar/gky079
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2018 | Journal Article | IST-REx-ID: 457
Pleska M, Lang M, Refardt D, Levin B, Guet CC. Phage-host population dynamics promotes prophage acquisition in bacteria with innate immunity. Nature Ecology and Evolution. 2018;2(2):359-366. doi:10.1038/s41559-017-0424-z
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2018 | Journal Article | IST-REx-ID: 503
Tomasek K, Bergmiller T, Guet CC. Lack of cations in flow cytometry buffers affect fluorescence signals by reducing membrane stability and viability of Escherichia coli strains. Journal of Biotechnology. 2018;268:40-52. doi:10.1016/j.jbiotec.2018.01.008
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