ISTA Research Explorer

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Athina Diakogianni

Calin Guet

Stepan Ovchinnikov

Bryan Wu

Puzhen Xia

Ekaterina Krasnopeeva

Roderich Römhild

Nathalie Gruber

Maros Pleska

Maria Mateescu

Anna Nagy-Staron

Claudia Igler

Tatjana Petrov

Nela Nikolic

Remy Chait

Tobias Bergmiller

Tiago Paixao

Mato Lagator

Moritz Lang

Rok Grah

Nikola Zarevski

Isabella Tomanek

Stephanie Kainrath

Kirti Jain

126 Publications

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2016 | Journal Article | IST-REx-ID: 1358 |

Intrinsic limits to gene regulation by global crosstalk
T. Friedlander, R. Prizak, C.C. Guet, N.H. Barton, G. Tkačik, Nature Communications 7 (2016).

[Published Version] View | Files available | DOI

2015 | Conference Paper | IST-REx-ID: 1430 |

First steps towards a runtime comparison of natural and artificial evolution
T. Paixao, D. Sudholt, J. Heredia, B. Trubenova, in:, Proceedings of the 2015 Annual Conference on Genetic and Evolutionary Computation, ACM, 2015, pp. 1455–1462.

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2015 | Journal Article | IST-REx-ID: 1542 |

Toward a unifying framework for evolutionary processes
T. Paixao, G. Badkobeh, N.H. Barton, D. Çörüş, D. Dang, T. Friedrich, P. Lehre, D. Sudholt, A. Sutton, B. Trubenova, Journal of Theoretical Biology 383 (2015) 28–43.

[Published Version] View | Files available | DOI

2015 | Journal Article | IST-REx-ID: 1840 |

Optimal Kullback-Leibler aggregation via information bottleneck
B. Geiger, T. Petrov, G. Kubin, H. Koeppl, IEEE Transactions on Automatic Control 60 (2015) 1010–1022.

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2015 | Research Data Reference | IST-REx-ID: 9712

Other fitness models for comparison & for interacting TFBSs
M. Tugrul, T. Paixao, N.H. Barton, G. Tkačik, (2015).

[Published Version] View | Files available | DOI

2015 | Research Data Reference | IST-REx-ID: 9719 |

Data from: Adaptation to parasites and costs of parasite resistance in mutator and non-mutator bacteria
S. Wielgoss, T. Bergmiller, A.M. Bischofberger, A.R. Hall, (2015).

[Published Version] View | Files available | DOI | Download Published Version (ext.)

2015 | Journal Article | IST-REx-ID: 1666 |

Dynamics of transcription factor binding site evolution
M. Tugrul, T. Paixao, N.H. Barton, G. Tkačik, PLoS Genetics 11 (2015).

[Published Version] View | Files available | DOI

2015 | Conference Paper | IST-REx-ID: 1835 |

Model checking gene regulatory networks
M. Giacobbe, C.C. Guet, A. Gupta, T.A. Henzinger, T. Paixao, T. Petrov, 9035 (2015) 469–483.

[Preprint] View | Files available | DOI | Download Preprint (ext.)

2014 | Journal Article | IST-REx-ID: 1894 |

Functional and bioinformatics analysis of two Campylobacter jejuni homologs of the thiol-disulfide oxidoreductase, DsbA
A. Grabowska, E. Wywiał, S. Dunin Horkawicz, A. Łasica, M. Wösten, A.A. Nagy-Staron, R. Godlewska, K. Bocian Ostrzycka, K. Pieńkowska, P. Łaniewski, J. Bujnicki, J. Van Putten, E. Jagusztyn Krynicka, PLoS One 9 (2014).

[Published Version] View | Files available | DOI

2014 | Journal Article | IST-REx-ID: 2056 |

Markov chain aggregation and its applications to combinatorial reaction networks
A. Ganguly, T. Petrov, H. Koeppl, Journal of Mathematical Biology 69 (2014) 767–797.

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2014 | Journal Article | IST-REx-ID: 2083 |

Role of sex and migration in adaptation to sink environments
M. Lagator, A. Morgan, P. Neve, N. Colegrave, Evolution 68 (2014) 2296–2305.

[Published Version] View | Files available | DOI

2014 | Research Data Reference | IST-REx-ID: 9747 |

Data from: Role of sex and migration in adaptation to sink environments
M. Lagator, A. Morgan, P. Neve, N. Colegrave, (2014).

[Published Version] View | Files available | DOI | Download Published Version (ext.)

2014 | Journal Article | IST-REx-ID: 2036 |

Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses
M. Lagator, N. Colegrave, P. Neve, Proceedings of the Royal Society of London Series B Biological Sciences 281 (2014).

[Submitted Version] View | Files available | DOI | Download Submitted Version (ext.)

2014 | Research Data Reference | IST-REx-ID: 9741 |

Data from: Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses
M. Lagator, N. Colegrave, P. Neve, (2014).

[Published Version] View | Files available | DOI | Download Published Version (ext.)

2014 | Journal Article | IST-REx-ID: 9931

Increased gene dosage plays a predominant role in the initial stages of evolution of duplicate TEM-1 beta lactamase genes
R. Dhar, T. Bergmiller, A. Wagner, Evolution 68 (2014) 1775–1791.

View | Files available | DOI | PubMed | Europe PMC

2014 | Research Data Reference | IST-REx-ID: 9932 |

Data from: Increased gene dosage plays a predominant role in the initial stages of evolution of duplicate TEM-1 beta lactamase genes
R. Dhar, T. Bergmiller, A. Wagner, (2014).

[Published Version] View | Files available | DOI | Download Published Version (ext.)

2014 | Journal Article | IST-REx-ID: 1913 |

Patterns of hippocampal tau pathology differentiate neurodegenerative dementias
I. Milenković, T. Petrov, G. Kovács, Dementia and Geriatric Cognitive Disorders 38 (2014) 375–388.

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

2013 | Conference Paper | IST-REx-ID: 2718 |

Can quantitative and population genetics help us understand evolutionary computation?
N.H. Barton, T. Paixao, in:, Proceedings of the 15th Annual Conference on Genetic and Evolutionary Computation, ACM, 2013, pp. 1573–1580.

[Submitted Version] View | Files available | DOI

2013 | Journal Article | IST-REx-ID: 2720 |

Accumulation of spontaneous mutations in the ciliate Tetrahymena thermophila
H. Long, T. Paixao, R. Azevedo, R. Zufall, Genetics 195 (2013) 527–540.

[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC

2013 | Conference Paper | IST-REx-ID: 2719

A variance decomposition approach to the analysis of genetic algorithms
T. Paixao, N.H. Barton, in:, Proceedings of the 15th Annual Conference on Genetic and Evolutionary Computation, ACM, 2013, pp. 845–852.

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