ISTA Research Explorer

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Bryan Wu

Ekaterina Krasnopeeva

Athina Diakogianni

Roderich Römhild

Nathalie Gruber

Calin Guet

Stepan Ovchinnikov

Puzhen Xia

Maros Pleska

Tiago Paixao

Isabella Tomanek

Moritz Lang

Tobias Bergmiller

Rok Grah

Nikola Zarevski

Maria Mateescu

Nela Nikolic

Tatjana Petrov

Stephanie Kainrath

Remy Chait

Claudia Igler

Anna Nagy-Staron

Mato Lagator

Kirti Jain

126 Publications

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2016 | Journal Article | IST-REx-ID: 1358 |

Intrinsic limits to gene regulation by global crosstalk
T. Friedlander, R. Prizak, C.C. Guet, N.H. Barton, G. Tkačik, Nature Communications 7 (2016).

[Published Version] View | Files available | DOI

2015 | Conference Paper | IST-REx-ID: 1430 |

First steps towards a runtime comparison of natural and artificial evolution
T. Paixao, D. Sudholt, J. Heredia, B. Trubenova, in:, Proceedings of the 2015 Annual Conference on Genetic and Evolutionary Computation, ACM, 2015, pp. 1455–1462.

[Preprint] View | DOI | Download Preprint (ext.)

2015 | Journal Article | IST-REx-ID: 1542 |

Toward a unifying framework for evolutionary processes
T. Paixao, G. Badkobeh, N.H. Barton, D. Çörüş, D. Dang, T. Friedrich, P. Lehre, D. Sudholt, A. Sutton, B. Trubenova, Journal of Theoretical Biology 383 (2015) 28–43.

[Published Version] View | Files available | DOI

2015 | Journal Article | IST-REx-ID: 1840 |

Optimal Kullback-Leibler aggregation via information bottleneck
B. Geiger, T. Petrov, G. Kubin, H. Koeppl, IEEE Transactions on Automatic Control 60 (2015) 1010–1022.

[Preprint] View | DOI | Download Preprint (ext.)

2015 | Research Data Reference | IST-REx-ID: 9712

Other fitness models for comparison & for interacting TFBSs
M. Tugrul, T. Paixao, N.H. Barton, G. Tkačik, (2015).

[Published Version] View | Files available | DOI

2015 | Research Data Reference | IST-REx-ID: 9719 |

Data from: Adaptation to parasites and costs of parasite resistance in mutator and non-mutator bacteria
S. Wielgoss, T. Bergmiller, A.M. Bischofberger, A.R. Hall, (2015).

[Published Version] View | Files available | DOI | Download Published Version (ext.)

2015 | Journal Article | IST-REx-ID: 1666 |

Dynamics of transcription factor binding site evolution
M. Tugrul, T. Paixao, N.H. Barton, G. Tkačik, PLoS Genetics 11 (2015).

[Published Version] View | Files available | DOI

2015 | Conference Paper | IST-REx-ID: 1835 |

Model checking gene regulatory networks
M. Giacobbe, C.C. Guet, A. Gupta, T.A. Henzinger, T. Paixao, T. Petrov, 9035 (2015) 469–483.

[Preprint] View | Files available | DOI | Download Preprint (ext.)

2014 | Journal Article | IST-REx-ID: 1894 |

Functional and bioinformatics analysis of two Campylobacter jejuni homologs of the thiol-disulfide oxidoreductase, DsbA
A. Grabowska, E. Wywiał, S. Dunin Horkawicz, A. Łasica, M. Wösten, A.A. Nagy-Staron, R. Godlewska, K. Bocian Ostrzycka, K. Pieńkowska, P. Łaniewski, J. Bujnicki, J. Van Putten, E. Jagusztyn Krynicka, PLoS One 9 (2014).

[Published Version] View | Files available | DOI

2014 | Journal Article | IST-REx-ID: 2056 |

Markov chain aggregation and its applications to combinatorial reaction networks
A. Ganguly, T. Petrov, H. Koeppl, Journal of Mathematical Biology 69 (2014) 767–797.

[Submitted Version] View | DOI | Download Submitted Version (ext.)