Petrov, Tatjana, et al. “Long Lived Transients in Gene Regulation.”10.1016/j.tcs.2021.05.023__Theoretical Computer Science, vol. 893, Elsevier, 2021, pp. 1–16, doi:10.1016/j.tcs.2021.05.023.
LibreCat: https://research-explorer.ista.ac.at/record/9647
DOI: 10.1016/j.tcs.2021.05.023
WoS: 000710180500002

Zisis, Themistoklis, et al. “Sequential and Switchable Patterning for Studying Cellular Processes under Spatiotemporal Control.”10.1021/acsami.1c09850__ACS Applied Materials and Interfaces, vol. 13, no. 30, American Chemical Society, 2021, pp. 35545–35560, doi:10.1021/acsami.1c09850.
LibreCat: https://research-explorer.ista.ac.at/record/9822
DOI: 10.1021/acsami.1c09850
WoS: 000683741400026
PMID: 34283577

Batra, Aditi, et al. “High Potency of Sequential Therapy with Only Beta-Lactam Antibiotics.”10.7554/elife.68876__ELife, vol. 10, e68876, eLife Sciences Publications, 2021, doi:10.7554/elife.68876.
LibreCat: https://research-explorer.ista.ac.at/record/9746
DOI: 10.7554/elife.68876
WoS: 000692027800001
PMID: 34318749

Lee, Jungmin, et al. “Rational Engineering of an Erythropoietin Fusion Protein to Treat Hypoxia.”10.1093/protein/gzab025__Protein Engineering, Design and Selection, vol. 34, gzab025, Oxford University Press, 2021, doi:10.1093/protein/gzab025.
LibreCat: https://research-explorer.ista.ac.at/record/10363
DOI: 10.1093/protein/gzab025
WoS: 000746596900001
PMID: 34725710

Nagy-Staron, Anna A., et al. “Local Genetic Context Shapes the Function of a Gene Regulatory Network.”10.7554/elife.65993__ELife, vol. 10, e65993, eLife Sciences Publications, 2021, doi:10.7554/elife.65993.
LibreCat: https://research-explorer.ista.ac.at/record/9283
DOI: 10.7554/elife.65993
WoS: 000631050900001

Le, Dai, et al. “Active Efflux Leads to Heterogeneous Dissipation of Proton Motive Force by Protonophores in Bacteria.”10.1128/mbio.00676-21__MBio, vol. 12, no. 4, 676, American Society for Microbiology, 2021, doi:10.1128/mbio.00676-21.
LibreCat: https://research-explorer.ista.ac.at/record/15270
DOI: 10.1128/mbio.00676-21
PMID: 34253054

Tomasek, Kathrin. Pathogenic Escherichia Coli Hijack the Host Immune Response. Institute of Science and Technology Austria, 2021, doi:10.15479/at:ista:10307.
LibreCat: https://research-explorer.ista.ac.at/record/10307
DOI: 10.15479/at:ista:10307

Tomasek, Kathrin, et al. “Type 1 Piliated Uropathogenic Escherichia Coli Hijack the Host Immune Response by Binding to C.”10.1101/2021.10.18.464770__BioRxiv, Cold Spring Harbor Laboratory, doi:10.1101/2021.10.18.464770.
LibreCat: https://research-explorer.ista.ac.at/record/10316
DOI: 10.1101/2021.10.18.464770

Kainrath, Stephanie, and Harald L. Janovjak. “Design and Application of Light-Regulated Receptor Tyrosine Kinases.”10.1007/978-1-0716-0755-8_16__Photoswitching Proteins, edited by Dominik Niopek, vol. 2173, Springer Nature, 2020, pp. 233–46, doi:10.1007/978-1-0716-0755-8_16.
LibreCat: https://research-explorer.ista.ac.at/record/8173
DOI: 10.1007/978-1-0716-0755-8_16

Grah, Rok. Gene Regulation across Scales – How Biophysical Constraints Shape Evolution. Institute of Science and Technology Austria, 2020, doi:10.15479/AT:ISTA:8155.
LibreCat: https://research-explorer.ista.ac.at/record/8155
DOI: 10.15479/AT:ISTA:8155

Grah, Rok, et al. “Normative Models of Enhancer Function.”10.1101/2020.04.08.029405__BioRxiv, Cold Spring Harbor Laboratory, 2020, doi:10.1101/2020.04.08.029405.
LibreCat: https://research-explorer.ista.ac.at/record/7675
DOI: 10.1101/2020.04.08.029405

Grah, Rok, and Tamar Friedlander. “The Relation between Crosstalk and Gene Regulation Form Revisited.”10.1371/journal.pcbi.1007642__PLOS Computational Biology, vol. 16, no. 2, e1007642, Public Library of Science, 2020, doi:10.1371/journal.pcbi.1007642.
LibreCat: https://research-explorer.ista.ac.at/record/7569
DOI: 10.1371/journal.pcbi.1007642
WoS: 000526725200019

Nagy-Staron, Anna A. Sequences of Gene Regulatory Network Permutations for the Article “Local Genetic Context Shapes the Function of a Gene Regulatory Network.” Institute of Science and Technology Austria, 2020, doi:10.15479/AT:ISTA:8951.
LibreCat: https://research-explorer.ista.ac.at/record/8951
DOI: 10.15479/AT:ISTA:8951

Grah, Rok. Matlab Scripts for the Paper: Gene Amplification as a Form of Population-Level Gene Expression Regulation. Institute of Science and Technology Austria, 2020, doi:10.15479/AT:ISTA:7383.
LibreCat: https://research-explorer.ista.ac.at/record/7383
DOI: 10.15479/AT:ISTA:7383

Kainrath, Stephanie. Synthetic Tools for Optogenetic and Chemogenetic Inhibition of Cellular Signals. Institute of Science and Technology Austria, 2020, doi:10.15479/AT:ISTA:7680.
LibreCat: https://research-explorer.ista.ac.at/record/7680
DOI: 10.15479/AT:ISTA:7680

Tomanek, Isabella, et al. “Gene Amplification as a Form of Population-Level Gene Expression Regulation.”10.1038/s41559-020-1132-7__Nature Ecology &; Evolution, vol. 4, no. 4, Springer Nature, 2020, pp. 612–25, doi:10.1038/s41559-020-1132-7.
LibreCat: https://research-explorer.ista.ac.at/record/7652
DOI: 10.1038/s41559-020-1132-7
WoS: 000519008300005

Tomanek, Isabella. The Evolution of Gene Expression by Copy Number and Point Mutations. Institute of Science and Technology Austria, 2020, doi:10.15479/AT:ISTA:8653.
LibreCat: https://research-explorer.ista.ac.at/record/8653
DOI: 10.15479/AT:ISTA:8653

Chassin, Hélène, et al. “A Modular Degron Library for Synthetic Circuits in Mammalian Cells.”10.1038/s41467-019-09974-5__Nature Communications, vol. 10, no. 1, 2013, Springer Nature, 2019, doi:10.1038/s41467-019-09974-5.
LibreCat: https://research-explorer.ista.ac.at/record/6465
DOI: 10.1038/s41467-019-09974-5
WoS: 000466338600006

Igler, Claudia, and Stephen T. Abedon. “Commentary: A Host-Produced Quorum-Sensing Autoinducer Controls a Phage Lysis-Lysogeny Decision.”10.3389/fmicb.2019.01171__Frontiers in Microbiology, vol. 10, 1171, Frontiers, 2019, doi:10.3389/fmicb.2019.01171.
LibreCat: https://research-explorer.ista.ac.at/record/6717
DOI: 10.3389/fmicb.2019.01171
WoS: 000470131200001

Ruess, Jakob, et al. “Molecular Noise of Innate Immunity Shapes Bacteria-Phage Ecologies.”10.1371/journal.pcbi.1007168__PLoS Computational Biology, vol. 15, no. 7, e1007168, Public Library of Science, 2019, doi:10.1371/journal.pcbi.1007168.
LibreCat: https://research-explorer.ista.ac.at/record/6784
DOI: 10.1371/journal.pcbi.1007168
WoS: 000481577700032

Ruess, Jakob, et al. Supporting Text and Results. Public Library of Science, 2019, doi:10.1371/journal.pcbi.1007168.s001.
LibreCat: https://research-explorer.ista.ac.at/record/9786
DOI: 10.1371/journal.pcbi.1007168.s001

Guet, Calin C., et al. “Transient Memory in Gene Regulation.”10.1007/978-3-030-31304-3_9__17th International Conference on Computational Methods in Systems Biology, vol. 11773, Springer Nature, 2019, pp. 155–87, doi:10.1007/978-3-030-31304-3_9.
LibreCat: https://research-explorer.ista.ac.at/record/7147
DOI: 10.1007/978-3-030-31304-3_9
WoS: 000557875100009

Nikolic, Nela. “Autoregulation of Bacterial Gene Expression: Lessons from the MazEF Toxin–Antitoxin System.”10.1007/s00294-018-0879-8__Current Genetics, vol. 65, no. 1, Springer, 2019, pp. 133–38, doi:10.1007/s00294-018-0879-8.
LibreCat: https://research-explorer.ista.ac.at/record/138
DOI: 10.1007/s00294-018-0879-8
WoS: 000456958800017

Lang, Moritz, and Mikhail Shkolnikov. “Harmonic Dynamics of the Abelian Sandpile.”10.1073/pnas.1812015116__Proceedings of the National Academy of Sciences, vol. 116, no. 8, National Academy of Sciences, 2019, pp. 2821–30, doi:10.1073/pnas.1812015116.
LibreCat: https://research-explorer.ista.ac.at/record/196
DOI: 10.1073/pnas.1812015116
WoS: 000459074400013
PMID:  30728300
arXiv: 1806.10823

Tomanek, Isabella. Data for the Paper “Gene Amplification as a Form of Population-Level Gene Expression Regulation.” Institute of Science and Technology Austria, 2019, doi:10.15479/AT:ISTA:7016.
LibreCat: https://research-explorer.ista.ac.at/record/7016
DOI: 10.15479/AT:ISTA:7016

Igler, Claudia. On the Nature of Gene Regulatory Design - The Biophysics of Transcription Factor Binding Shapes Gene Regulation. Institute of Science and Technology Austria, 2019, doi:10.15479/AT:ISTA:6371.
LibreCat: https://research-explorer.ista.ac.at/record/6371
DOI: 10.15479/AT:ISTA:6371

Misun, Patrick, et al. “Fabrication and Operation of Microfluidic Hanging Drop Networks.”10.1007/978-1-4939-7792-5_15__Methods in Molecular Biology, vol. 1771, Springer, 2018, pp. 183–202, doi:10.1007/978-1-4939-7792-5_15.
LibreCat: https://research-explorer.ista.ac.at/record/305
DOI: 10.1007/978-1-4939-7792-5_15

Oliveto, Pietro, et al. “How to Escape Local Optima in Black Box Optimisation When Non Elitism Outperforms Elitism.”10.1007/s00453-017-0369-2__Algorithmica, vol. 80, no. 5, Springer, 2018, pp. 1604–33, doi:10.1007/s00453-017-0369-2.
LibreCat: https://research-explorer.ista.ac.at/record/723
DOI: 10.1007/s00453-017-0369-2
WoS: 000428239300010

Tomasek, Kathrin, et al. “Lack of Cations in Flow Cytometry Buffers Affect Fluorescence Signals by Reducing Membrane Stability and Viability of Escherichia Coli Strains.”10.1016/j.jbiotec.2018.01.008__Journal of Biotechnology, vol. 268, Elsevier, 2018, pp. 40–52, doi:10.1016/j.jbiotec.2018.01.008.
LibreCat: https://research-explorer.ista.ac.at/record/503
DOI: 10.1016/j.jbiotec.2018.01.008
WoS: 000425715100006

Chaudhry, Waqas, et al. “Leaky Resistance and the Conditions for the Existence of Lytic Bacteriophage.”10.1371/journal.pbio.2005971__PLoS Biology, vol. 16, no. 8, 2005971, Public Library of Science, 2018, doi:10.1371/journal.pbio.2005971.
LibreCat: https://research-explorer.ista.ac.at/record/82
DOI: 10.1371/journal.pbio.2005971
WoS: 000443383300024

Chaudhry, Waqas, et al. Numerical Data Used in Figures. Public Library of Science, 2018, doi:10.1371/journal.pbio.2005971.s008.
LibreCat: https://research-explorer.ista.ac.at/record/9810
DOI: 10.1371/journal.pbio.2005971.s008

Pleska, Maros, et al. “Phage-Host Population Dynamics Promotes Prophage Acquisition in Bacteria with Innate Immunity.”10.1038/s41559-017-0424-z__Nature Ecology and Evolution, vol. 2, no. 2, Springer Nature, 2018, pp. 359–66, doi:10.1038/s41559-017-0424-z.
LibreCat: https://research-explorer.ista.ac.at/record/457
DOI: 10.1038/s41559-017-0424-z
WoS: 000426516400027

Morri, Maurizio, et al. “Optical Functionalization of Human Class A Orphan G-Protein-Coupled Receptors.”10.1038/s41467-018-04342-1__Nature Communications, vol. 9, no. 1, 1950, Springer Nature, 2018, doi:10.1038/s41467-018-04342-1.
LibreCat: https://research-explorer.ista.ac.at/record/5984
DOI: 10.1038/s41467-018-04342-1
WoS: 000432280000006

Palmer, Adam, et al. “Nonoptimal Gene Expression Creates Latent Potential for Antibiotic Resistance.”10.1093/molbev/msy163__Molecular Biology and Evolution, vol. 35, no. 11, Oxford University Press, 2018, pp. 2669–84, doi:10.1093/molbev/msy163.
LibreCat: https://research-explorer.ista.ac.at/record/19
DOI: 10.1093/molbev/msy163
WoS: 000452567200006
PMID: 30169679

Nikolic, Nela, et al. “Autoregulation of MazEF Expression Underlies Growth Heterogeneity in Bacterial Populations.”10.1093/nar/gky079__Nucleic Acids Research, vol. 46, no. 6, Oxford University Press, 2018, pp. 2918–31, doi:10.1093/nar/gky079.
LibreCat: https://research-explorer.ista.ac.at/record/438
DOI: 10.1093/nar/gky079
WoS: 000429009500021

Bergmiller, Tobias, and Nela Nikolic. Time-Lapse Microscopy Data. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:74.
LibreCat: https://research-explorer.ista.ac.at/record/5569
DOI: 10.15479/AT:ISTA:74

De Martino, Daniele, et al. “Statistical Mechanics for Metabolic Networks during Steady State Growth.”10.1038/s41467-018-05417-9__Nature Communications, vol. 9, no. 1, 2988, Springer Nature, 2018, doi:10.1038/s41467-018-05417-9.
LibreCat: https://research-explorer.ista.ac.at/record/161
DOI: 10.1038/s41467-018-05417-9
WoS: 000440149300021

Steinrück, Magdalena. The Influence of Sequence Context on the Evolution of Bacterial Gene Expression. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:th1059.
LibreCat: https://research-explorer.ista.ac.at/record/26
DOI: 10.15479/AT:ISTA:th1059

Igler, Claudia, et al. “Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring.”10.1038/s41559-018-0651-y__Nature Ecology and Evolution, vol. 2, no. 10, Nature Publishing Group, 2018, pp. 1633–43, doi:10.1038/s41559-018-0651-y.
LibreCat: https://research-explorer.ista.ac.at/record/67
DOI: 10.1038/s41559-018-0651-y
WoS: 000447947600021

Igler, Claudia, et al. Data for the Paper Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:108.
LibreCat: https://research-explorer.ista.ac.at/record/5585
DOI: 10.15479/AT:ISTA:108

Kainrath, Stephanie, et al. “Grünlicht-Induzierte Rezeptorinaktivierung Durch Cobalamin-Bindende Domänen.”10.1002/ange.201611998__Angewandte Chemie, vol. 129, no. 16, Wiley, 2017, pp. 4679–82, doi:10.1002/ange.201611998.
LibreCat: https://research-explorer.ista.ac.at/record/538
DOI: 10.1002/ange.201611998

Lagator, Mato, et al. “Regulatory Network Structure Determines Patterns of Intermolecular Epistasis.”10.7554/eLife.28921__ELife, vol. 6, e28921, eLife Sciences Publications, 2017, doi:10.7554/eLife.28921.
LibreCat: https://research-explorer.ista.ac.at/record/570
DOI: 10.7554/eLife.28921

Chait, Remy P., et al. “Shaping Bacterial Population Behavior through Computer Interfaced Control of Individual Cells.”10.1038/s41467-017-01683-1__Nature Communications, vol. 8, no. 1, 1535, Nature Publishing Group, 2017, doi:10.1038/s41467-017-01683-1.
LibreCat: https://research-explorer.ista.ac.at/record/613
DOI: 10.1038/s41467-017-01683-1

Nikolic, Nela, et al. “MazF Activation Promotes Translational Heterogeneity of the GrcA MRNA in Escherichia Coli Populations.”10.7717/peerj.3830__PeerJ, vol. 2017, no. 9, 3830, PeerJ, 2017, doi:10.7717/peerj.3830.
LibreCat: https://research-explorer.ista.ac.at/record/624
DOI: 10.7717/peerj.3830

Renault, Thibaud, et al. “Bacterial Flagella Grow through an Injection Diffusion Mechanism.”10.7554/eLife.23136__ELife, vol. 6, e23136, eLife Sciences Publications, 2017, doi:10.7554/eLife.23136.
LibreCat: https://research-explorer.ista.ac.at/record/655
DOI: 10.7554/eLife.23136

Nikolic, Nela, et al. “Cell-to-Cell Variation and Specialization in Sugar Metabolism in Clonal Bacterial Populations.”10.1371/journal.pgen.1007122__PLoS Genetics, vol. 13, no. 12, e1007122, Public Library of Science, 2017, doi:10.1371/journal.pgen.1007122.
LibreCat: https://research-explorer.ista.ac.at/record/541
DOI: 10.1371/journal.pgen.1007122

Pleska, Maros, and Calin C. Guet. Supplementary Materials and Methods; Full Data Set from Effects of Mutations in Phage Restriction Sites during Escape from Restriction–Modification. The Royal Society, 2017, doi:10.6084/m9.figshare.5633917.v1.
LibreCat: https://research-explorer.ista.ac.at/record/9847
DOI: 10.6084/m9.figshare.5633917.v1

Nikolic, Nela, et al. Mathematical Model. Public Library of Science, 2017, doi:10.1371/journal.pgen.1007122.s017.
LibreCat: https://research-explorer.ista.ac.at/record/9845
DOI: 10.1371/journal.pgen.1007122.s017

Lukacisinova, Marta, et al. Modelling and Simulation Details. Public Library of Science, 2017, doi:10.1371/journal.pcbi.1005609.s001.
LibreCat: https://research-explorer.ista.ac.at/record/9849
DOI: 10.1371/journal.pcbi.1005609.s001

Lukacisinova, Marta, et al. Extensions of the Model. Public Library of Science, 2017, doi:10.1371/journal.pcbi.1005609.s002.
LibreCat: https://research-explorer.ista.ac.at/record/9850
DOI: 10.1371/journal.pcbi.1005609.s002