Petrov, Tatjana, Claudia Igler, Ali Sezgin, Thomas A Henzinger, and Calin C Guet. “Long Lived Transients in Gene Regulation.”https://doi.org/10.1016/j.tcs.2021.05.023__Theoretical Computer Science. Elsevier, 2021.https://doi.org/10.1016/j.tcs.2021.05.023 .
LibreCat: https://research-explorer.ista.ac.at/record/9647
DOI: 10.1016/j.tcs.2021.05.023
WoS: 000710180500002

Zisis, Themistoklis, Jan Schwarz, Miriam Balles, Maibritt Kretschmer, Maria Nemethova, Remy P Chait, Robert Hauschild, et al. “Sequential and Switchable Patterning for Studying Cellular Processes under Spatiotemporal Control.”https://doi.org/10.1021/acsami.1c09850__ACS Applied Materials and Interfaces. American Chemical Society, 2021.https://doi.org/10.1021/acsami.1c09850 .
LibreCat: https://research-explorer.ista.ac.at/record/9822
DOI: 10.1021/acsami.1c09850
WoS: 000683741400026
PMID: 34283577

Batra, Aditi, Roderich Römhild, Emilie Rousseau, Sören Franzenburg, Stefan Niemann, and Hinrich Schulenburg. “High Potency of Sequential Therapy with Only Beta-Lactam Antibiotics.”https://doi.org/10.7554/elife.68876__ELife. eLife Sciences Publications, 2021.https://doi.org/10.7554/elife.68876 .
LibreCat: https://research-explorer.ista.ac.at/record/9746
DOI: 10.7554/elife.68876
WoS: 000692027800001
PMID: 34318749

Lee, Jungmin, Andyna Vernet, Nathalie Gruber, Kasia M. Kready, Devin R. Burrill, Jeffrey C. Way, and Pamela A. Silver. “Rational Engineering of an Erythropoietin Fusion Protein to Treat Hypoxia.”https://doi.org/10.1093/protein/gzab025__Protein Engineering, Design and Selection. Oxford University Press, 2021.https://doi.org/10.1093/protein/gzab025 .
LibreCat: https://research-explorer.ista.ac.at/record/10363
DOI: 10.1093/protein/gzab025
WoS: 000746596900001
PMID: 34725710

Nagy-Staron, Anna A, Kathrin Tomasek, Caroline Caruso Carter, Elisabeth Sonnleitner, Bor Kavcic, Tiago Paixão, and Calin C Guet. “Local Genetic Context Shapes the Function of a Gene Regulatory Network.”https://doi.org/10.7554/elife.65993__ELife. eLife Sciences Publications, 2021.https://doi.org/10.7554/elife.65993 .
LibreCat: https://research-explorer.ista.ac.at/record/9283
DOI: 10.7554/elife.65993
WoS: 000631050900001

Le, Dai, Ekaterina Krasnopeeva, Faris Sinjab, Teuta Pilizota, and Minsu Kim. “Active Efflux Leads to Heterogeneous Dissipation of Proton Motive Force by Protonophores in Bacteria.”https://doi.org/10.1128/mbio.00676-21__MBio. American Society for Microbiology, 2021.https://doi.org/10.1128/mbio.00676-21 .
LibreCat: https://research-explorer.ista.ac.at/record/15270
DOI: 10.1128/mbio.00676-21
PMID: 34253054

Tomasek, Kathrin. “Pathogenic Escherichia Coli Hijack the Host Immune Response.”https://doi.org/10.15479/at:ista:10307__Institute of Science and Technology Austria, 2021.https://doi.org/10.15479/at:ista:10307 .
LibreCat: https://research-explorer.ista.ac.at/record/10307
DOI: 10.15479/at:ista:10307

Tomasek, Kathrin, Alexander F Leithner, Ivana Glatzová, Michael S. Lukesch, Calin C Guet, and Michael K Sixt. “Type 1 Piliated Uropathogenic Escherichia Coli Hijack the Host Immune Response by Binding to C.”https://doi.org/10.1101/2021.10.18.464770__BioRxiv. Cold Spring Harbor Laboratory, n.d.https://doi.org/10.1101/2021.10.18.464770 .
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DOI: 10.1101/2021.10.18.464770

Kainrath, Stephanie, and Harald L Janovjak. “Design and Application of Light-Regulated Receptor Tyrosine Kinases.”https://doi.org/10.1007/978-1-0716-0755-8_16__In Photoswitching Proteins, edited by Dominik Niopek, 2173:233–46. MIMB. Springer Nature, 2020.https://doi.org/10.1007/978-1-0716-0755-8_16 .
LibreCat: https://research-explorer.ista.ac.at/record/8173
DOI: 10.1007/978-1-0716-0755-8_16

Grah, Rok. “Gene Regulation across Scales – How Biophysical Constraints Shape Evolution.”https://doi.org/10.15479/AT:ISTA:8155__Institute of Science and Technology Austria, 2020.https://doi.org/10.15479/AT:ISTA:8155 .
LibreCat: https://research-explorer.ista.ac.at/record/8155
DOI: 10.15479/AT:ISTA:8155

Grah, Rok, Benjamin Zoller, and Gasper Tkadik. “Normative Models of Enhancer Function.”https://doi.org/10.1101/2020.04.08.029405__BioRxiv. Cold Spring Harbor Laboratory, 2020.https://doi.org/10.1101/2020.04.08.029405 .
LibreCat: https://research-explorer.ista.ac.at/record/7675
DOI: 10.1101/2020.04.08.029405

Grah, Rok, and Tamar Friedlander. “The Relation between Crosstalk and Gene Regulation Form Revisited.”https://doi.org/10.1371/journal.pcbi.1007642__PLOS Computational Biology. Public Library of Science, 2020.https://doi.org/10.1371/journal.pcbi.1007642 .
LibreCat: https://research-explorer.ista.ac.at/record/7569
DOI: 10.1371/journal.pcbi.1007642
WoS: 000526725200019

Nagy-Staron, Anna A. “Sequences of Gene Regulatory Network Permutations for the Article ‘Local Genetic Context Shapes the Function of a Gene Regulatory Network.’”https://doi.org/10.15479/AT:ISTA:8951__Institute of Science and Technology Austria, 2020.https://doi.org/10.15479/AT:ISTA:8951 .
LibreCat: https://research-explorer.ista.ac.at/record/8951
DOI: 10.15479/AT:ISTA:8951

Grah, Rok. “Matlab Scripts for the Paper: Gene Amplification as a Form of Population-Level Gene Expression Regulation.”https://doi.org/10.15479/AT:ISTA:7383__Institute of Science and Technology Austria, 2020.https://doi.org/10.15479/AT:ISTA:7383 .
LibreCat: https://research-explorer.ista.ac.at/record/7383
DOI: 10.15479/AT:ISTA:7383

Kainrath, Stephanie. “Synthetic Tools for Optogenetic and Chemogenetic Inhibition of Cellular Signals.”https://doi.org/10.15479/AT:ISTA:7680__Institute of Science and Technology Austria, 2020.https://doi.org/10.15479/AT:ISTA:7680 .
LibreCat: https://research-explorer.ista.ac.at/record/7680
DOI: 10.15479/AT:ISTA:7680

Tomanek, Isabella, Rok Grah, M. Lagator, A. M. C. Andersson, Jonathan P Bollback, Gasper Tkadik, and Calin C Guet. “Gene Amplification as a Form of Population-Level Gene Expression Regulation.”https://doi.org/10.1038/s41559-020-1132-7__Nature Ecology &; Evolution. Springer Nature, 2020.https://doi.org/10.1038/s41559-020-1132-7 .
LibreCat: https://research-explorer.ista.ac.at/record/7652
DOI: 10.1038/s41559-020-1132-7
WoS: 000519008300005

Tomanek, Isabella. “The Evolution of Gene Expression by Copy Number and Point Mutations.”https://doi.org/10.15479/AT:ISTA:8653__Institute of Science and Technology Austria, 2020.https://doi.org/10.15479/AT:ISTA:8653 .
LibreCat: https://research-explorer.ista.ac.at/record/8653
DOI: 10.15479/AT:ISTA:8653

Chassin, Hélène, Marius Müller, Marcel Tigges, Leo Scheller, Moritz Lang, and Martin Fussenegger. “A Modular Degron Library for Synthetic Circuits in Mammalian Cells.”https://doi.org/10.1038/s41467-019-09974-5__Nature Communications. Springer Nature, 2019.https://doi.org/10.1038/s41467-019-09974-5 .
LibreCat: https://research-explorer.ista.ac.at/record/6465
DOI: 10.1038/s41467-019-09974-5
WoS: 000466338600006

Igler, Claudia, and Stephen T. Abedon. “Commentary: A Host-Produced Quorum-Sensing Autoinducer Controls a Phage Lysis-Lysogeny Decision.”https://doi.org/10.3389/fmicb.2019.01171__Frontiers in Microbiology. Frontiers, 2019.https://doi.org/10.3389/fmicb.2019.01171 .
LibreCat: https://research-explorer.ista.ac.at/record/6717
DOI: 10.3389/fmicb.2019.01171
WoS: 000470131200001

Ruess, Jakob, Maros Pleska, Calin C Guet, and Gasper Tkadik. “Molecular Noise of Innate Immunity Shapes Bacteria-Phage Ecologies.”https://doi.org/10.1371/journal.pcbi.1007168__PLoS Computational Biology. Public Library of Science, 2019.https://doi.org/10.1371/journal.pcbi.1007168 .
LibreCat: https://research-explorer.ista.ac.at/record/6784
DOI: 10.1371/journal.pcbi.1007168
WoS: 000481577700032

Ruess, Jakob, Maros Pleska, Calin C Guet, and Gasper Tkadik. “Supporting Text and Results.”https://doi.org/10.1371/journal.pcbi.1007168.s001__Public Library of Science, 2019.https://doi.org/10.1371/journal.pcbi.1007168.s001 .
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DOI: 10.1371/journal.pcbi.1007168.s001

Guet, Calin C, Thomas A Henzinger, Claudia Igler, Tatjana Petrov, and Ali Sezgin. “Transient Memory in Gene Regulation.”https://doi.org/10.1007/978-3-030-31304-3_9__In 17th International Conference on Computational Methods in Systems Biology, 11773:155–87. Springer Nature, 2019.https://doi.org/10.1007/978-3-030-31304-3_9 .
LibreCat: https://research-explorer.ista.ac.at/record/7147
DOI: 10.1007/978-3-030-31304-3_9
WoS: 000557875100009

Nikolic, Nela. “Autoregulation of Bacterial Gene Expression: Lessons from the MazEF Toxin–Antitoxin System.”https://doi.org/10.1007/s00294-018-0879-8__Current Genetics. Springer, 2019.https://doi.org/10.1007/s00294-018-0879-8 .
LibreCat: https://research-explorer.ista.ac.at/record/138
DOI: 10.1007/s00294-018-0879-8
WoS: 000456958800017

Lang, Moritz, and Mikhail Shkolnikov. “Harmonic Dynamics of the Abelian Sandpile.”https://doi.org/10.1073/pnas.1812015116__Proceedings of the National Academy of Sciences. National Academy of Sciences, 2019.https://doi.org/10.1073/pnas.1812015116 .
LibreCat: https://research-explorer.ista.ac.at/record/196
DOI: 10.1073/pnas.1812015116
WoS: 000459074400013
PMID:  30728300
arXiv: 1806.10823

Tomanek, Isabella. “Data for the Paper ‘Gene Amplification as a Form of Population-Level Gene Expression Regulation.’”https://doi.org/10.15479/AT:ISTA:7016__Institute of Science and Technology Austria, 2019.https://doi.org/10.15479/AT:ISTA:7016 .
LibreCat: https://research-explorer.ista.ac.at/record/7016
DOI: 10.15479/AT:ISTA:7016

Igler, Claudia. “On the Nature of Gene Regulatory Design - The Biophysics of Transcription Factor Binding Shapes Gene Regulation.”https://doi.org/10.15479/AT:ISTA:6371__Institute of Science and Technology Austria, 2019.https://doi.org/10.15479/AT:ISTA:6371 .
LibreCat: https://research-explorer.ista.ac.at/record/6371
DOI: 10.15479/AT:ISTA:6371

Misun, Patrick, Axel Birchler, Moritz Lang, Andreas Hierlemann, and Olivier Frey. “Fabrication and Operation of Microfluidic Hanging Drop Networks.”https://doi.org/10.1007/978-1-4939-7792-5_15__Methods in Molecular Biology. Springer, 2018.https://doi.org/10.1007/978-1-4939-7792-5_15 .
LibreCat: https://research-explorer.ista.ac.at/record/305
DOI: 10.1007/978-1-4939-7792-5_15

Oliveto, Pietro, Tiago Paixao, Jorge Pérez Heredia, Dirk Sudholt, and Barbora Trubenova. “How to Escape Local Optima in Black Box Optimisation When Non Elitism Outperforms Elitism.”https://doi.org/10.1007/s00453-017-0369-2__Algorithmica. Springer, 2018.https://doi.org/10.1007/s00453-017-0369-2 .
LibreCat: https://research-explorer.ista.ac.at/record/723
DOI: 10.1007/s00453-017-0369-2
WoS: 000428239300010

Tomasek, Kathrin, Tobias Bergmiller, and Calin C Guet. “Lack of Cations in Flow Cytometry Buffers Affect Fluorescence Signals by Reducing Membrane Stability and Viability of Escherichia Coli Strains.”https://doi.org/10.1016/j.jbiotec.2018.01.008__Journal of Biotechnology. Elsevier, 2018.https://doi.org/10.1016/j.jbiotec.2018.01.008 .
LibreCat: https://research-explorer.ista.ac.at/record/503
DOI: 10.1016/j.jbiotec.2018.01.008
WoS: 000425715100006

Chaudhry, Waqas, Maros Pleska, Nilang Shah, Howard Weiss, Ingrid Mccall, Justin Meyer, Animesh Gupta, Calin C Guet, and Bruce Levin. “Leaky Resistance and the Conditions for the Existence of Lytic Bacteriophage.”https://doi.org/10.1371/journal.pbio.2005971__PLoS Biology. Public Library of Science, 2018.https://doi.org/10.1371/journal.pbio.2005971 .
LibreCat: https://research-explorer.ista.ac.at/record/82
DOI: 10.1371/journal.pbio.2005971
WoS: 000443383300024

Chaudhry, Waqas, Maros Pleska, Nilang Shah, Howard Weiss, Ingrid Mccall, Justin Meyer, Animesh Gupta, Calin C Guet, and Bruce Levin. “Numerical Data Used in Figures.”https://doi.org/10.1371/journal.pbio.2005971.s008__Public Library of Science, 2018.https://doi.org/10.1371/journal.pbio.2005971.s008 .
LibreCat: https://research-explorer.ista.ac.at/record/9810
DOI: 10.1371/journal.pbio.2005971.s008

Pleska, Maros, Moritz Lang, Dominik Refardt, Bruce Levin, and Calin C Guet. “Phage-Host Population Dynamics Promotes Prophage Acquisition in Bacteria with Innate Immunity.”https://doi.org/10.1038/s41559-017-0424-z__Nature Ecology and Evolution. Springer Nature, 2018.https://doi.org/10.1038/s41559-017-0424-z .
LibreCat: https://research-explorer.ista.ac.at/record/457
DOI: 10.1038/s41559-017-0424-z
WoS: 000426516400027

Morri, Maurizio, Inmaculada Sanchez-Romero, Alexandra-Madelaine Tichy, Stephanie Kainrath, Elliot J. Gerrard, Priscila Hirschfeld, Jan Schwarz, and Harald L Janovjak. “Optical Functionalization of Human Class A Orphan G-Protein-Coupled Receptors.”https://doi.org/10.1038/s41467-018-04342-1__Nature Communications. Springer Nature, 2018.https://doi.org/10.1038/s41467-018-04342-1 .
LibreCat: https://research-explorer.ista.ac.at/record/5984
DOI: 10.1038/s41467-018-04342-1
WoS: 000432280000006

Palmer, Adam, Remy P Chait, and Roy Kishony. “Nonoptimal Gene Expression Creates Latent Potential for Antibiotic Resistance.”https://doi.org/10.1093/molbev/msy163__Molecular Biology and Evolution. Oxford University Press, 2018.https://doi.org/10.1093/molbev/msy163 .
LibreCat: https://research-explorer.ista.ac.at/record/19
DOI: 10.1093/molbev/msy163
WoS: 000452567200006
PMID: 30169679

Nikolic, Nela, Tobias Bergmiller, Alexandra Vandervelde, Tanino Albanese, Lendert Gelens, and Isabella Moll. “Autoregulation of MazEF Expression Underlies Growth Heterogeneity in Bacterial Populations.”https://doi.org/10.1093/nar/gky079__Nucleic Acids Research. Oxford University Press, 2018.https://doi.org/10.1093/nar/gky079 .
LibreCat: https://research-explorer.ista.ac.at/record/438
DOI: 10.1093/nar/gky079
WoS: 000429009500021

Bergmiller, Tobias, and Nela Nikolic. “Time-Lapse Microscopy Data.”https://doi.org/10.15479/AT:ISTA:74__Institute of Science and Technology Austria, 2018.https://doi.org/10.15479/AT:ISTA:74 .
LibreCat: https://research-explorer.ista.ac.at/record/5569
DOI: 10.15479/AT:ISTA:74

De Martino, Daniele, Andersson Anna Mc, Tobias Bergmiller, Calin C Guet, and Gasper Tkadik. “Statistical Mechanics for Metabolic Networks during Steady State Growth.”https://doi.org/10.1038/s41467-018-05417-9__Nature Communications. Springer Nature, 2018.https://doi.org/10.1038/s41467-018-05417-9 .
LibreCat: https://research-explorer.ista.ac.at/record/161
DOI: 10.1038/s41467-018-05417-9
WoS: 000440149300021

Steinrück, Magdalena. “The Influence of Sequence Context on the Evolution of Bacterial Gene Expression.”https://doi.org/10.15479/AT:ISTA:th1059__Institute of Science and Technology Austria, 2018.https://doi.org/10.15479/AT:ISTA:th1059 .
LibreCat: https://research-explorer.ista.ac.at/record/26
DOI: 10.15479/AT:ISTA:th1059

Igler, Claudia, Mato Lagator, Gasper Tkadik, Jonathan P Bollback, and Calin C Guet. “Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring.”https://doi.org/10.1038/s41559-018-0651-y__Nature Ecology and Evolution. Nature Publishing Group, 2018.https://doi.org/10.1038/s41559-018-0651-y .
LibreCat: https://research-explorer.ista.ac.at/record/67
DOI: 10.1038/s41559-018-0651-y
WoS: 000447947600021

Igler, Claudia, Mato Lagator, Gasper Tkadik, Jonathan P Bollback, and Calin C Guet. “Data for the Paper Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring.”https://doi.org/10.15479/AT:ISTA:108__Institute of Science and Technology Austria, 2018.https://doi.org/10.15479/AT:ISTA:108 .
LibreCat: https://research-explorer.ista.ac.at/record/5585
DOI: 10.15479/AT:ISTA:108

Kainrath, Stephanie, Manuela Stadler, Eva Gschaider-Reichhart, Martin Distel, and Harald L Janovjak. “Grünlicht-Induzierte Rezeptorinaktivierung Durch Cobalamin-Bindende Domänen.”https://doi.org/10.1002/ange.201611998__Angewandte Chemie. Wiley, 2017.https://doi.org/10.1002/ange.201611998 .
LibreCat: https://research-explorer.ista.ac.at/record/538
DOI: 10.1002/ange.201611998

Lagator, Mato, Srdjan Sarikas, Hande Acar, Jonathan P Bollback, and Calin C Guet. “Regulatory Network Structure Determines Patterns of Intermolecular Epistasis.”https://doi.org/10.7554/eLife.28921__ELife. eLife Sciences Publications, 2017.https://doi.org/10.7554/eLife.28921 .
LibreCat: https://research-explorer.ista.ac.at/record/570
DOI: 10.7554/eLife.28921

Chait, Remy P, Jakob Ruess, Tobias Bergmiller, Gasper Tkadik, and Calin C Guet. “Shaping Bacterial Population Behavior through Computer Interfaced Control of Individual Cells.”https://doi.org/10.1038/s41467-017-01683-1__Nature Communications. Nature Publishing Group, 2017.https://doi.org/10.1038/s41467-017-01683-1 .
LibreCat: https://research-explorer.ista.ac.at/record/613
DOI: 10.1038/s41467-017-01683-1

Nikolic, Nela, Zrinka Didara, and Isabella Moll. “MazF Activation Promotes Translational Heterogeneity of the GrcA MRNA in Escherichia Coli Populations.”https://doi.org/10.7717/peerj.3830__PeerJ. PeerJ, 2017.https://doi.org/10.7717/peerj.3830 .
LibreCat: https://research-explorer.ista.ac.at/record/624
DOI: 10.7717/peerj.3830

Renault, Thibaud, Anthony Abraham, Tobias Bergmiller, Guillaume Paradis, Simon Rainville, Emmanuelle Charpentier, Calin C Guet, et al. “Bacterial Flagella Grow through an Injection Diffusion Mechanism.”https://doi.org/10.7554/eLife.23136__ELife. eLife Sciences Publications, 2017.https://doi.org/10.7554/eLife.23136 .
LibreCat: https://research-explorer.ista.ac.at/record/655
DOI: 10.7554/eLife.23136

Nikolic, Nela, Frank Schreiber, Alma Dal Co, Daniel Kiviet, Tobias Bergmiller, Sten Littmann, Marcel Kuypers, and Martin Ackermann. “Cell-to-Cell Variation and Specialization in Sugar Metabolism in Clonal Bacterial Populations.”https://doi.org/10.1371/journal.pgen.1007122__PLoS Genetics. Public Library of Science, 2017.https://doi.org/10.1371/journal.pgen.1007122 .
LibreCat: https://research-explorer.ista.ac.at/record/541
DOI: 10.1371/journal.pgen.1007122

Pleska, Maros, and Calin C Guet. “Supplementary Materials and Methods; Full Data Set from Effects of Mutations in Phage Restriction Sites during Escape from Restriction–Modification.”https://doi.org/10.6084/m9.figshare.5633917.v1__The Royal Society, 2017.https://doi.org/10.6084/m9.figshare.5633917.v1 .
LibreCat: https://research-explorer.ista.ac.at/record/9847
DOI: 10.6084/m9.figshare.5633917.v1

Nikolic, Nela, Frank Schreiber, Alma Dal Co, Daniel Kiviet, Tobias Bergmiller, Sten Littmann, Marcel Kuypers, and Martin Ackermann. “Mathematical Model.”https://doi.org/10.1371/journal.pgen.1007122.s017__Public Library of Science, 2017.https://doi.org/10.1371/journal.pgen.1007122.s017 .
LibreCat: https://research-explorer.ista.ac.at/record/9845
DOI: 10.1371/journal.pgen.1007122.s017

Lukacisinova, Marta, Sebastian Novak, and Tiago Paixao. “Modelling and Simulation Details.”https://doi.org/10.1371/journal.pcbi.1005609.s001__Public Library of Science, 2017.https://doi.org/10.1371/journal.pcbi.1005609.s001 .
LibreCat: https://research-explorer.ista.ac.at/record/9849
DOI: 10.1371/journal.pcbi.1005609.s001

Lukacisinova, Marta, Sebastian Novak, and Tiago Paixao. “Extensions of the Model.”https://doi.org/10.1371/journal.pcbi.1005609.s002__Public Library of Science, 2017.https://doi.org/10.1371/journal.pcbi.1005609.s002 .
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DOI: 10.1371/journal.pcbi.1005609.s002