---
_id: '2201'
abstract:
- lang: eng
text: We study the growth dynamics of ordered structures of strongly interacting
polar molecules in optical lattices. Using a dipole blockade of microwave excitations,
we map the system onto an interacting spin-1/2 model possessing ground states
with crystalline order, and describe a way to prepare these states by nonadiabatically
driving the transitions between molecular rotational levels. The proposed technique
bypasses the need to cross a phase transition and allows for the creation of ordered
domains of considerably larger size compared to approaches relying on adiabatic
preparation.
article_processing_charge: No
author:
- first_name: Mikhail
full_name: Lemeshko, Mikhail
id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
last_name: Lemeshko
orcid: 0000-0002-6990-7802
- first_name: Roman
full_name: Krems, Roman
last_name: Krems
- first_name: Hendrik
full_name: Weimer, Hendrik
last_name: Weimer
citation:
ama: Lemeshko M, Krems R, Weimer H. Nonadiabatic preparation of spin crystals with
ultracold polar molecules. Physical Review Letters. 2012;109(3). doi:10.1103/PhysRevLett.109.035301
apa: Lemeshko, M., Krems, R., & Weimer, H. (2012). Nonadiabatic preparation
of spin crystals with ultracold polar molecules. Physical Review Letters.
American Physical Society. https://doi.org/10.1103/PhysRevLett.109.035301
chicago: Lemeshko, Mikhail, Roman Krems, and Hendrik Weimer. “Nonadiabatic Preparation
of Spin Crystals with Ultracold Polar Molecules.” Physical Review Letters.
American Physical Society, 2012. https://doi.org/10.1103/PhysRevLett.109.035301.
ieee: M. Lemeshko, R. Krems, and H. Weimer, “Nonadiabatic preparation of spin crystals
with ultracold polar molecules,” Physical Review Letters, vol. 109, no.
3. American Physical Society, 2012.
ista: Lemeshko M, Krems R, Weimer H. 2012. Nonadiabatic preparation of spin crystals
with ultracold polar molecules. Physical Review Letters. 109(3).
mla: Lemeshko, Mikhail, et al. “Nonadiabatic Preparation of Spin Crystals with Ultracold
Polar Molecules.” Physical Review Letters, vol. 109, no. 3, American Physical
Society, 2012, doi:10.1103/PhysRevLett.109.035301.
short: M. Lemeshko, R. Krems, H. Weimer, Physical Review Letters 109 (2012).
date_created: 2018-12-11T11:56:17Z
date_published: 2012-07-16T00:00:00Z
date_updated: 2021-11-16T08:01:02Z
day: '16'
doi: 10.1103/PhysRevLett.109.035301
extern: '1'
intvolume: ' 109'
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1203.0010
month: '07'
oa: 1
oa_version: None
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '4772'
related_material:
link:
- relation: erratum
url: https://doi.org/10.1103/PhysRevLett.109.049901
status: public
title: Nonadiabatic preparation of spin crystals with ultracold polar molecules
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 109
year: '2012'
...
---
_id: '2202'
abstract:
- lang: eng
text: We propose a method for sensitive parallel detection of low-frequency electromagnetic
fields based on the fine structure interactions in paramagnetic polar molecules.
Compared to the recently implemented scheme employing ultracold 87Rb atoms by
Böhi, the technique based on molecules offers a 100-fold higher sensitivity, the
possibility to measure both the electric and magnetic field components, and a
probe of a wide range of frequencies from the dc limit to the THz regime.
author:
- first_name: Sergey
full_name: Alyabyshev, Sergey V
last_name: Alyabyshev
- first_name: Mikhail
full_name: Mikhail Lemeshko
id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
last_name: Lemeshko
orcid: 0000-0002-6990-7802
- first_name: Roman
full_name: Krems, Roman V
last_name: Krems
citation:
ama: Alyabyshev S, Lemeshko M, Krems R. Sensitive imaging of electromagnetic fields
with paramagnetic polar molecules. Physical Review A - Atomic, Molecular, and
Optical Physics. 2012;86(1). doi:10.1103/PhysRevA.86.013409
apa: Alyabyshev, S., Lemeshko, M., & Krems, R. (2012). Sensitive imaging of
electromagnetic fields with paramagnetic polar molecules. Physical Review A
- Atomic, Molecular, and Optical Physics. American Physical Society. https://doi.org/10.1103/PhysRevA.86.013409
chicago: Alyabyshev, Sergey, Mikhail Lemeshko, and Roman Krems. “Sensitive Imaging
of Electromagnetic Fields with Paramagnetic Polar Molecules.” Physical Review
A - Atomic, Molecular, and Optical Physics. American Physical Society, 2012.
https://doi.org/10.1103/PhysRevA.86.013409.
ieee: S. Alyabyshev, M. Lemeshko, and R. Krems, “Sensitive imaging of electromagnetic
fields with paramagnetic polar molecules,” Physical Review A - Atomic, Molecular,
and Optical Physics, vol. 86, no. 1. American Physical Society, 2012.
ista: Alyabyshev S, Lemeshko M, Krems R. 2012. Sensitive imaging of electromagnetic
fields with paramagnetic polar molecules. Physical Review A - Atomic, Molecular,
and Optical Physics. 86(1).
mla: Alyabyshev, Sergey, et al. “Sensitive Imaging of Electromagnetic Fields with
Paramagnetic Polar Molecules.” Physical Review A - Atomic, Molecular, and Optical
Physics, vol. 86, no. 1, American Physical Society, 2012, doi:10.1103/PhysRevA.86.013409.
short: S. Alyabyshev, M. Lemeshko, R. Krems, Physical Review A - Atomic, Molecular,
and Optical Physics 86 (2012).
date_created: 2018-12-11T11:56:18Z
date_published: 2012-07-13T00:00:00Z
date_updated: 2021-01-12T06:55:57Z
day: '13'
doi: 10.1103/PhysRevA.86.013409
extern: 1
intvolume: ' 86'
issue: '1'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1202.1857
month: '07'
oa: 1
publication: Physical Review A - Atomic, Molecular, and Optical Physics
publication_status: published
publisher: American Physical Society
publist_id: '4773'
quality_controlled: 0
status: public
title: Sensitive imaging of electromagnetic fields with paramagnetic polar molecules
type: journal_article
volume: 86
year: '2012'
...
---
_id: '2263'
abstract:
- lang: eng
text: Nestin-cre transgenic mice have been widely used to direct recombination to
neural stem cells (NSCs) and intermediate neural progenitor cells (NPCs). Here
we report that a readily utilized, and the only commercially available, Nestin-cre
line is insufficient for directing recombination in early embryonic NSCs and NPCs.
Analysis of recombination efficiency in multiple cre-dependent reporters and a
genetic mosaic line revealed consistent temporal and spatial patterns of recombination
in NSCs and NPCs. For comparison we utilized a knock-in Emx1cre line and found
robust recombination in NSCs and NPCs in ventricular and subventricular zones
of the cerebral cortices as early as embryonic day 12.5. In addition we found
that the rate of Nestin-cre driven recombination only reaches sufficiently high
levels in NSCs and NPCs during late embryonic and early postnatal periods. These
findings are important when commercially available cre lines are considered for
directing recombination to embryonic NSCs and NPCs.
author:
- first_name: Huixuan
full_name: Liang, Huixuan
last_name: Liang
- first_name: Simon
full_name: Hippenmeyer, Simon
id: 37B36620-F248-11E8-B48F-1D18A9856A87
last_name: Hippenmeyer
orcid: 0000-0003-2279-1061
- first_name: H.
full_name: Ghashghaei, H.
last_name: Ghashghaei
citation:
ama: Liang H, Hippenmeyer S, Ghashghaei H. A Nestin-cre transgenic mouse is insufficient
for recombination in early embryonic neural progenitors. Biology open.
2012;1(12):1200-1203. doi:10.1242/bio.20122287
apa: Liang, H., Hippenmeyer, S., & Ghashghaei, H. (2012). A Nestin-cre transgenic
mouse is insufficient for recombination in early embryonic neural progenitors.
Biology Open. The Company of Biologists. https://doi.org/10.1242/bio.20122287
chicago: Liang, Huixuan, Simon Hippenmeyer, and H. Ghashghaei. “A Nestin-Cre Transgenic
Mouse Is Insufficient for Recombination in Early Embryonic Neural Progenitors.”
Biology Open. The Company of Biologists, 2012. https://doi.org/10.1242/bio.20122287.
ieee: H. Liang, S. Hippenmeyer, and H. Ghashghaei, “A Nestin-cre transgenic mouse
is insufficient for recombination in early embryonic neural progenitors,” Biology
open, vol. 1, no. 12. The Company of Biologists, pp. 1200–1203, 2012.
ista: Liang H, Hippenmeyer S, Ghashghaei H. 2012. A Nestin-cre transgenic mouse
is insufficient for recombination in early embryonic neural progenitors. Biology
open. 1(12), 1200–1203.
mla: Liang, Huixuan, et al. “A Nestin-Cre Transgenic Mouse Is Insufficient for Recombination
in Early Embryonic Neural Progenitors.” Biology Open, vol. 1, no. 12, The
Company of Biologists, 2012, pp. 1200–03, doi:10.1242/bio.20122287.
short: H. Liang, S. Hippenmeyer, H. Ghashghaei, Biology Open 1 (2012) 1200–1203.
date_created: 2018-12-11T11:56:38Z
date_published: 2012-12-15T00:00:00Z
date_updated: 2021-01-12T06:56:23Z
day: '15'
ddc:
- '576'
department:
- _id: SiHi
doi: 10.1242/bio.20122287
file:
- access_level: open_access
checksum: 605a1800b81227848c361fd6ba7d22ba
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:13:09Z
date_updated: 2020-07-14T12:45:35Z
file_id: '4990'
file_name: IST-2015-387-v1+1_1200.full.pdf
file_size: 726695
relation: main_file
file_date_updated: 2020-07-14T12:45:35Z
has_accepted_license: '1'
intvolume: ' 1'
issue: '12'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-sa/4.0/
month: '12'
oa: 1
oa_version: Published Version
page: 1200 - 1203
publication: Biology open
publication_status: published
publisher: The Company of Biologists
publist_id: '4682'
pubrep_id: '387'
quality_controlled: '1'
scopus_import: 1
status: public
title: A Nestin-cre transgenic mouse is insufficient for recombination in early embryonic
neural progenitors
tmp:
image: /images/cc_by_nc_sa.png
legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
BY-NC-SA 4.0)
short: CC BY-NC-SA (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 1
year: '2012'
...
---
_id: '2267'
abstract:
- lang: eng
text: 'Capturing real-world objects with laser-scanning technology has become an
everyday task. Recently, the acquisition of dynamic scenes at interactive frame
rates has become feasible. A high-quality visualization of the resulting point
cloud stream would require a per-frame reconstruction of object surfaces. Unfortunately,
reconstruction computations are still too time-consuming to be applied interactively.
In this paper we present a local surface reconstruction and visualization technique
that provides interactive feedback for reasonably sized point clouds, while achieving
high image quality. Our method is performed entirely on the GPU and in screen
pace, exploiting the efficiency of the common rasterization pipeline. The approach
is very general, as no assumption is made about point connectivity or sampling
density. This naturally allows combining the outputs of multiple scanners in a
single visualization, which is useful for many virtual and augmented reality applications. '
author:
- first_name: Reinhold
full_name: Preiner, Reinhold
last_name: Preiner
- first_name: Stefan
full_name: Jeschke, Stefan
id: 44D6411A-F248-11E8-B48F-1D18A9856A87
last_name: Jeschke
- first_name: Michael
full_name: Wimmer, Michael
last_name: Wimmer
citation:
ama: 'Preiner R, Jeschke S, Wimmer M. Auto splats: Dynamic point cloud visualization
on the GPU. In: Eurographics Association; 2012:139-148. doi:10.2312/EGPGV/EGPGV12/139-148'
apa: 'Preiner, R., Jeschke, S., & Wimmer, M. (2012). Auto splats: Dynamic point
cloud visualization on the GPU (pp. 139–148). Presented at the EGPGV: Eurographics
Symposium on Parallel Graphics and Visualization, Calgari, Italy: Eurographics
Association. https://doi.org/10.2312/EGPGV/EGPGV12/139-148'
chicago: 'Preiner, Reinhold, Stefan Jeschke, and Michael Wimmer. “Auto Splats: Dynamic
Point Cloud Visualization on the GPU,” 139–48. Eurographics Association, 2012.
https://doi.org/10.2312/EGPGV/EGPGV12/139-148.'
ieee: 'R. Preiner, S. Jeschke, and M. Wimmer, “Auto splats: Dynamic point cloud
visualization on the GPU,” presented at the EGPGV: Eurographics Symposium on Parallel
Graphics and Visualization, Calgari, Italy, 2012, pp. 139–148.'
ista: 'Preiner R, Jeschke S, Wimmer M. 2012. Auto splats: Dynamic point cloud visualization
on the GPU. EGPGV: Eurographics Symposium on Parallel Graphics and Visualization,
139–148.'
mla: 'Preiner, Reinhold, et al. Auto Splats: Dynamic Point Cloud Visualization
on the GPU. Eurographics Association, 2012, pp. 139–48, doi:10.2312/EGPGV/EGPGV12/139-148.'
short: R. Preiner, S. Jeschke, M. Wimmer, in:, Eurographics Association, 2012, pp.
139–148.
conference:
end_date: 2012-05-14
location: Calgari, Italy
name: 'EGPGV: Eurographics Symposium on Parallel Graphics and Visualization'
start_date: 2012-05-13
date_created: 2018-12-11T11:56:40Z
date_published: 2012-05-13T00:00:00Z
date_updated: 2021-01-12T06:56:24Z
day: '13'
ddc:
- '000'
doi: 10.2312/EGPGV/EGPGV12/139-148
extern: '1'
file:
- access_level: open_access
checksum: 5495bb6ee8662cd401b34afb04dfb40f
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:11:13Z
date_updated: 2020-07-14T12:45:35Z
file_id: '4866'
file_name: IST-2016-572-v1+1_preiner_2012_AS-draft.pdf
file_size: 14903860
relation: main_file
file_date_updated: 2020-07-14T12:45:35Z
has_accepted_license: '1'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Submitted Version
page: 139 - 148
publication_status: published
publisher: Eurographics Association
publist_id: '4677'
pubrep_id: '572'
quality_controlled: '1'
status: public
title: 'Auto splats: Dynamic point cloud visualization on the GPU'
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
year: '2012'
...
---
_id: '2262'
abstract:
- lang: eng
text: 'Mosaic Analysis with Double Markers (MADM) is a method for generating genetically
mosaic mice, in which sibling mutant and wild-type cells are labeled with different
fluorescent markers. It is a powerful tool that enables analysis of gene function
at the single cell level in vivo. It requires transgenic cassettes to be located
between the centromere and the mutation in the gene of interest on the same chromosome.
Here we compare procedures for introduction of MADM cassettes into new loci in
the mouse genome, and describe new approaches for expanding the utility of MADM.
We show that: 1) Targeted homologous recombination outperforms random transgenesis
in generation of reliably expressed MADM cassettes, 2) MADM cassettes in new genomic
loci need to be validated for biallelic and ubiquitous expression, 3) Recombination
between MADM cassettes on different chromosomes can be used to study reciprocal
chromosomal deletions/duplications, and 4) MADM can be modified to permit transgene
expression by combining it with a binary expression system. The advances described
in this study expand current, and enable new and more versatile applications of
MADM.'
acknowledgement: This work was supported by a National Institutes of Health grant
to LL (R01-NS050835). BT was a Damon Runyon Fellow and was supported by the Damon
Runyon Cancer Research Foundation Grant DRG-1819-04. KM was supported by the Japan
Society for the Promotion of Science program for Research Abroad and Human Frontier
Science Program Organization (LT00300/2007-L). SH was supported by postdoctoral
fellowships from the European Molecular Biology Organization (ALTF 851-2005), Human
Frontier Science Program Organization (LT00805/2006-L), and Swiss National Science
Foundation (PA00P3_124160 and PA00P3_136482). HZ is a Pew Scholar in Biomedical
Sciences, supported by The Pew Charitable Trusts. LL is an investigator of the Howard
Hughes Medical Institute. The funders had no role in study design, data collection
and analysis, decision to publish, or preparation of the manuscript.
author:
- first_name: Bosiljka
full_name: Tasic, Bosiljka
last_name: Tasic
- first_name: Kazunari
full_name: Miyamichi, Kazunari
last_name: Miyamichi
- first_name: Simon
full_name: Simon Hippenmeyer
id: 37B36620-F248-11E8-B48F-1D18A9856A87
last_name: Hippenmeyer
orcid: 0000-0003-2279-1061
- first_name: Vardhan
full_name: Dani, Vardhan S.
last_name: Dani
- first_name: H.
full_name: Zeng, H.
last_name: Zeng
- first_name: William
full_name: Joo, William
last_name: Joo
- first_name: Hui
full_name: Zong, Hui
last_name: Zong
- first_name: Yanru
full_name: Chen-Tsai, Yanru
last_name: Chen Tsai
- first_name: Liqun
full_name: Luo, Liqun
last_name: Luo
citation:
ama: Tasic B, Miyamichi K, Hippenmeyer S, et al. Extensions of MADM (Mosaic Analysis
with Double Markers) in Mice . PLoS One. 2012;7(3). doi:10.1371/journal.pone.0033332
apa: Tasic, B., Miyamichi, K., Hippenmeyer, S., Dani, V., Zeng, H., Joo, W., … Luo,
L. (2012). Extensions of MADM (Mosaic Analysis with Double Markers) in Mice .
PLoS One. Public Library of Science. https://doi.org/10.1371/journal.pone.0033332
chicago: Tasic, Bosiljka, Kazunari Miyamichi, Simon Hippenmeyer, Vardhan Dani, H.
Zeng, William Joo, Hui Zong, Yanru Chen Tsai, and Liqun Luo. “Extensions of MADM
(Mosaic Analysis with Double Markers) in Mice .” PLoS One. Public Library
of Science, 2012. https://doi.org/10.1371/journal.pone.0033332.
ieee: B. Tasic et al., “Extensions of MADM (Mosaic Analysis with Double Markers)
in Mice ,” PLoS One, vol. 7, no. 3. Public Library of Science, 2012.
ista: Tasic B, Miyamichi K, Hippenmeyer S, Dani V, Zeng H, Joo W, Zong H, Chen Tsai
Y, Luo L. 2012. Extensions of MADM (Mosaic Analysis with Double Markers) in Mice
. PLoS One. 7(3).
mla: Tasic, Bosiljka, et al. “Extensions of MADM (Mosaic Analysis with Double Markers)
in Mice .” PLoS One, vol. 7, no. 3, Public Library of Science, 2012, doi:10.1371/journal.pone.0033332.
short: B. Tasic, K. Miyamichi, S. Hippenmeyer, V. Dani, H. Zeng, W. Joo, H. Zong,
Y. Chen Tsai, L. Luo, PLoS One 7 (2012).
date_created: 2018-12-11T11:56:38Z
date_published: 2012-03-27T00:00:00Z
date_updated: 2021-01-12T06:56:22Z
day: '27'
doi: 10.1371/journal.pone.0033332
extern: 1
intvolume: ' 7'
issue: '3'
month: '03'
publication: PLoS One
publication_status: published
publisher: Public Library of Science
publist_id: '4683'
quality_controlled: 0
status: public
title: 'Extensions of MADM (Mosaic Analysis with Double Markers) in Mice '
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
volume: 7
year: '2012'
...
---
_id: '2268'
abstract:
- lang: eng
text: 'This paper presents an analytic formulation for anti-aliased sampling of
2D polygons and 3D polyhedra. Our framework allows the exact evaluation of the
convolution integral with a linear function defined on the polytopes. The filter
is a spherically symmetric polynomial of any order, supporting approximations
to refined variants such as the Mitchell-Netravali filter family. This enables
high-quality rasterization of triangles and tetrahedra with linearly interpolated
vertex values to regular and non-regular grids. A closed form solution of the
convolution is presented and an efficient implementation on the GPU using DirectX
and CUDA C is described. '
acknowledgement: |-
Funding was provided by the FWF grant P20768-N13.
We want to thank the reviewers for their insightful and helpful remarks, Hang Si for making available TetGen and Stefan Bruckner for VolumeShop.
alternative_title:
- Computer Graphics Forum
author:
- first_name: Thomas
full_name: Thomas Auzinger
id: 4718F954-F248-11E8-B48F-1D18A9856A87
last_name: Auzinger
orcid: 0000-0002-1546-3265
- first_name: Michael
full_name: Guthe, Michael
last_name: Guthe
- first_name: Stefan
full_name: Stefan Jeschke
id: 44D6411A-F248-11E8-B48F-1D18A9856A87
last_name: Jeschke
citation:
ama: 'Auzinger T, Guthe M, Jeschke S. Analytic anti-aliasing of linear functions
on polytopes. In: Vol 31. Wiley-Blackwell; 2012:335-344. doi:http://dx.doi.org/10.1111/j.1467-8659.2012.03012.x'
apa: 'Auzinger, T., Guthe, M., & Jeschke, S. (2012). Analytic anti-aliasing
of linear functions on polytopes (Vol. 31, pp. 335–344). Presented at the EUROGRAPHICS:
European Association for Computer Graphics, Wiley-Blackwell. http://dx.doi.org/10.1111/j.1467-8659.2012.03012.x'
chicago: Auzinger, Thomas, Michael Guthe, and Stefan Jeschke. “Analytic Anti-Aliasing
of Linear Functions on Polytopes,” 31:335–44. Wiley-Blackwell, 2012. http://dx.doi.org/10.1111/j.1467-8659.2012.03012.x.
ieee: 'T. Auzinger, M. Guthe, and S. Jeschke, “Analytic anti-aliasing of linear
functions on polytopes,” presented at the EUROGRAPHICS: European Association for
Computer Graphics, 2012, vol. 31, no. 121, pp. 335–344.'
ista: 'Auzinger T, Guthe M, Jeschke S. 2012. Analytic anti-aliasing of linear functions
on polytopes. EUROGRAPHICS: European Association for Computer Graphics, Computer
Graphics Forum, vol. 31, 335–344.'
mla: Auzinger, Thomas, et al. Analytic Anti-Aliasing of Linear Functions on Polytopes.
Vol. 31, no. 121, Wiley-Blackwell, 2012, pp. 335–44, doi:http://dx.doi.org/10.1111/j.1467-8659.2012.03012.x.
short: T. Auzinger, M. Guthe, S. Jeschke, in:, Wiley-Blackwell, 2012, pp. 335–344.
conference:
name: 'EUROGRAPHICS: European Association for Computer Graphics'
date_created: 2018-12-11T11:56:40Z
date_published: 2012-05-13T00:00:00Z
date_updated: 2021-01-12T06:56:24Z
day: '13'
doi: http://dx.doi.org/10.1111/j.1467-8659.2012.03012.x
extern: 1
intvolume: ' 31'
issue: 121
main_file_link:
- open_access: '1'
url: https://www.cg.tuwien.ac.at/research/publications/2012/Auzinger_2012_AAA/
month: '05'
oa: 1
page: 335 - 344
publication_status: published
publisher: Wiley-Blackwell
publist_id: '4676'
quality_controlled: 0
status: public
title: Analytic anti-aliasing of linear functions on polytopes
type: conference
volume: 31
year: '2012'
...
---
_id: '2302'
abstract:
- lang: eng
text: 'We introduce propagation models (PMs), a formalism able to express several
kinds of equations that describe the behavior of biochemical reaction networks.
Furthermore, we introduce the propagation abstract data type (PADT), which separates
concerns regarding different numerical algorithms for the transient analysis of
biochemical reaction networks from concerns regarding their implementation, thus
allowing for portable and efficient solutions. The state of a propagation abstract
data type is given by a vector that assigns mass values to a set of nodes, and
its (next) operator propagates mass values through this set of nodes. We propose
an approximate implementation of the (next) operator, based on threshold abstraction,
which propagates only "significant" mass values and thus achieves a
compromise between efficiency and accuracy. Finally, we give three use cases for
propagation models: the chemical master equation (CME), the reaction rate equation
(RRE), and a hybrid method that combines these two equations. These three applications
use propagation models in order to propagate probabilities and/or expected values
and variances of the model''s variables.'
author:
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
- first_name: Maria
full_name: Mateescu, Maria
id: 3B43276C-F248-11E8-B48F-1D18A9856A87
last_name: Mateescu
citation:
ama: Henzinger TA, Mateescu M. The propagation approach for computing biochemical
reaction networks. IEEE ACM Transactions on Computational Biology and Bioinformatics.
2012;10(2):310-322. doi:10.1109/TCBB.2012.91
apa: Henzinger, T. A., & Mateescu, M. (2012). The propagation approach for computing
biochemical reaction networks. IEEE ACM Transactions on Computational Biology
and Bioinformatics. IEEE. https://doi.org/10.1109/TCBB.2012.91
chicago: Henzinger, Thomas A, and Maria Mateescu. “The Propagation Approach for
Computing Biochemical Reaction Networks.” IEEE ACM Transactions on Computational
Biology and Bioinformatics. IEEE, 2012. https://doi.org/10.1109/TCBB.2012.91.
ieee: T. A. Henzinger and M. Mateescu, “The propagation approach for computing biochemical
reaction networks,” IEEE ACM Transactions on Computational Biology and Bioinformatics,
vol. 10, no. 2. IEEE, pp. 310–322, 2012.
ista: Henzinger TA, Mateescu M. 2012. The propagation approach for computing biochemical
reaction networks. IEEE ACM Transactions on Computational Biology and Bioinformatics.
10(2), 310–322.
mla: Henzinger, Thomas A., and Maria Mateescu. “The Propagation Approach for Computing
Biochemical Reaction Networks.” IEEE ACM Transactions on Computational Biology
and Bioinformatics, vol. 10, no. 2, IEEE, 2012, pp. 310–22, doi:10.1109/TCBB.2012.91.
short: T.A. Henzinger, M. Mateescu, IEEE ACM Transactions on Computational Biology
and Bioinformatics 10 (2012) 310–322.
date_created: 2018-12-11T11:56:52Z
date_published: 2012-07-03T00:00:00Z
date_updated: 2021-01-12T06:56:38Z
day: '03'
department:
- _id: ToHe
- _id: CaGu
doi: 10.1109/TCBB.2012.91
ec_funded: 1
external_id:
pmid:
- '22778152'
intvolume: ' 10'
issue: '2'
language:
- iso: eng
month: '07'
oa_version: None
page: 310 - 322
pmid: 1
project:
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '267989'
name: Quantitative Reactive Modeling
publication: IEEE ACM Transactions on Computational Biology and Bioinformatics
publication_status: published
publisher: IEEE
publist_id: '4625'
quality_controlled: '1'
scopus_import: 1
status: public
title: The propagation approach for computing biochemical reaction networks
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 10
year: '2012'
...
---
_id: '2313'
abstract:
- lang: eng
text: The translation of "next-generation" sequencing directly to the
clinic is still being assessed but has the potential for genetic diseases to reduce
costs, advance accuracy, and point to unsuspected yet treatable conditions. To
study its capability in the clinic, we performed whole-exome sequencing in 118
probands with a diagnosis of a pediatric-onset neurodevelopmental disease in which
most known causes had been excluded. Twenty-two genes not previously identified
as disease-causing were identified in this study (19% of cohort), further establishing
exome sequencing as a useful tool for gene discovery. New genes identified included
EXOC8 in Joubert syndrome and GFM2 in a patient with microcephaly, simplified
gyral pattern, and insulin-dependent diabetes. Exome sequencing uncovered 10 probands
(8% of cohort) with mutations in genes known to cause a disease different from
the initial diagnosis. Upon further medical evaluation, these mutations were found
to account for each proband's disease, leading to a change in diagnosis, some
of which led to changes in patient management. Our data provide proof of principle
that genomic strategies are useful in clarifying diagnosis in a proportion of
patients with neurodevelopmental disorders.
author:
- first_name: Tracy
full_name: Dixon-Salazar, Tracy J
last_name: Dixon Salazar
- first_name: Jennifer
full_name: Silhavy, Jennifer L
last_name: Silhavy
- first_name: Nitin
full_name: Udpa, Nitin
last_name: Udpa
- first_name: Jana
full_name: Schroth, Jana
last_name: Schroth
- first_name: Stephanie
full_name: Bielas, Stephanie L
last_name: Bielas
- first_name: Ashleigh
full_name: Schaffer, Ashleigh E
last_name: Schaffer
- first_name: Jesus
full_name: Olvera, Jesus
last_name: Olvera
- first_name: Vineet
full_name: Bafna, Vineet K
last_name: Bafna
- first_name: Maha
full_name: Zaki, Maha S
last_name: Zaki
- first_name: Ghada
full_name: Abdel-Salam, Ghada M
last_name: Abdel Salam
- first_name: Lobna
full_name: Mansour, Lobna A
last_name: Mansour
- first_name: Laila
full_name: Selim, Laila A
last_name: Selim
- first_name: Sawsan
full_name: Abdel-Hadi, Sawsan S
last_name: Abdel Hadi
- first_name: Naima
full_name: Marzouki, Naima
last_name: Marzouki
- first_name: Tawfeg
full_name: Ben-Omran, Tawfeg I
last_name: Ben Omran
- first_name: Nouriya
full_name: Al-Saana, Nouriya A
last_name: Al Saana
- first_name: Fatma
full_name: Sönmez, Fatma M
last_name: Sönmez
- first_name: Figen
full_name: Celep, Figen
last_name: Celep
- first_name: Matloob
full_name: Azam, Matloob
last_name: Azam
- first_name: Kiley
full_name: Hill, Kiley J
last_name: Hill
- first_name: Adrienne
full_name: Collazo, Adrienne
last_name: Collazo
- first_name: Ali
full_name: Fenstermaker, Ali G
last_name: Fenstermaker
- first_name: Gaia
full_name: Gaia Novarino
id: 3E57A680-F248-11E8-B48F-1D18A9856A87
last_name: Novarino
orcid: 0000-0002-7673-7178
- first_name: Naiara
full_name: Akizu, Naiara
last_name: Akizu
- first_name: Kiran
full_name: Garimella, Kiran V
last_name: Garimella
- first_name: Carrie
full_name: Sougnez, Carrie L
last_name: Sougnez
- first_name: Carsten
full_name: Russ, Carsten
last_name: Russ
- first_name: Stacey
full_name: Gabriel, Stacey B
last_name: Gabriel
- first_name: Joseph
full_name: Gleeson, Joseph G
last_name: Gleeson
citation:
ama: Dixon Salazar T, Silhavy J, Udpa N, et al. Exome sequencing can improve diagnosis
and alter patient management. Science Translational Medicine. 2012;4(138).
doi:10.1126/scitranslmed.3003544
apa: Dixon Salazar, T., Silhavy, J., Udpa, N., Schroth, J., Bielas, S., Schaffer,
A., … Gleeson, J. (2012). Exome sequencing can improve diagnosis and alter patient
management. Science Translational Medicine. American Association for the
Advancement of Science. https://doi.org/10.1126/scitranslmed.3003544
chicago: Dixon Salazar, Tracy, Jennifer Silhavy, Nitin Udpa, Jana Schroth, Stephanie
Bielas, Ashleigh Schaffer, Jesus Olvera, et al. “Exome Sequencing Can Improve
Diagnosis and Alter Patient Management.” Science Translational Medicine.
American Association for the Advancement of Science, 2012. https://doi.org/10.1126/scitranslmed.3003544.
ieee: T. Dixon Salazar et al., “Exome sequencing can improve diagnosis and
alter patient management,” Science Translational Medicine, vol. 4, no.
138. American Association for the Advancement of Science, 2012.
ista: Dixon Salazar T, Silhavy J, Udpa N, Schroth J, Bielas S, Schaffer A, Olvera
J, Bafna V, Zaki M, Abdel Salam G, Mansour L, Selim L, Abdel Hadi S, Marzouki
N, Ben Omran T, Al Saana N, Sönmez F, Celep F, Azam M, Hill K, Collazo A, Fenstermaker
A, Novarino G, Akizu N, Garimella K, Sougnez C, Russ C, Gabriel S, Gleeson J.
2012. Exome sequencing can improve diagnosis and alter patient management. Science
Translational Medicine. 4(138).
mla: Dixon Salazar, Tracy, et al. “Exome Sequencing Can Improve Diagnosis and Alter
Patient Management.” Science Translational Medicine, vol. 4, no. 138, American
Association for the Advancement of Science, 2012, doi:10.1126/scitranslmed.3003544.
short: T. Dixon Salazar, J. Silhavy, N. Udpa, J. Schroth, S. Bielas, A. Schaffer,
J. Olvera, V. Bafna, M. Zaki, G. Abdel Salam, L. Mansour, L. Selim, S. Abdel Hadi,
N. Marzouki, T. Ben Omran, N. Al Saana, F. Sönmez, F. Celep, M. Azam, K. Hill,
A. Collazo, A. Fenstermaker, G. Novarino, N. Akizu, K. Garimella, C. Sougnez,
C. Russ, S. Gabriel, J. Gleeson, Science Translational Medicine 4 (2012).
date_created: 2018-12-11T11:56:56Z
date_published: 2012-06-13T00:00:00Z
date_updated: 2021-01-12T06:56:43Z
day: '13'
doi: 10.1126/scitranslmed.3003544
extern: 1
intvolume: ' 4'
issue: '138'
month: '06'
publication: Science Translational Medicine
publication_status: published
publisher: American Association for the Advancement of Science
publist_id: '4614'
quality_controlled: 0
status: public
title: Exome sequencing can improve diagnosis and alter patient management
type: journal_article
volume: 4
year: '2012'
...
---
_id: '2314'
abstract:
- lang: eng
text: Autism spectrum disorders are a genetically heterogeneous constellation of
syndromes characterized by impairments in reciprocal social interaction. Available
somatic treatments have limited efficacy. We have identified inactivating mutations
in the gene BCKDK (Branched Chain Ketoacid Dehydrogenase Kinase) in consanguineous
families with autism, epilepsy, and intellectual disability. The encoded protein
is responsible for phosphorylation-mediated inactivation of the E1α subunit of
branched-chain ketoacid dehydrogenase (BCKDH). Patients with homozygous BCKDK
mutations display reductions in BCKDK messenger RNA and protein, E1α phosphorylation,
and plasma branched-chain amino acids. Bckdk knockout mice show abnormal brain
amino acid profiles and neurobehavioral deficits that respond to dietary supplementation.
Thus, autism presenting with intellectual disability and epilepsy caused by BCKDK
mutations represents a potentially treatable syndrome.
author:
- first_name: Gaia
full_name: Gaia Novarino
id: 3E57A680-F248-11E8-B48F-1D18A9856A87
last_name: Novarino
orcid: 0000-0002-7673-7178
- first_name: Paul
full_name: El-Fishawy, Paul
last_name: El Fishawy
- first_name: Hülya
full_name: Kayserili, Hülya
last_name: Kayserili
- first_name: Nagwa
full_name: Meguid, Nagwa A
last_name: Meguid
- first_name: Eric
full_name: Scott, Eric M
last_name: Scott
- first_name: Jana
full_name: Schroth, Jana
last_name: Schroth
- first_name: Jennifer
full_name: Silhavy, Jennifer L
last_name: Silhavy
- first_name: Majdi
full_name: Kara, Majdi
last_name: Kara
- first_name: Rehab
full_name: Khalil, Rehab O
last_name: Khalil
- first_name: Tawfeg
full_name: Ben-Omran, Tawfeg I
last_name: Ben Omran
- first_name: Adife
full_name: Ercan-Sencicek, Adife G
last_name: Ercan Sencicek
- first_name: Adel
full_name: Hashish, Adel F
last_name: Hashish
- first_name: Stephan
full_name: Sanders, Stephan J
last_name: Sanders
- first_name: Abha
full_name: Gupta, Abha R
last_name: Gupta
- first_name: Hebatalla
full_name: Hashem, Hebatalla S
last_name: Hashem
- first_name: Dietrich
full_name: Matern, Dietrich
last_name: Matern
- first_name: Stacey
full_name: Gabriel, Stacey B
last_name: Gabriel
- first_name: Lawrence
full_name: Sweetman, Lawrence
last_name: Sweetman
- first_name: Yasmeen
full_name: Rahimi, Yasmeen
last_name: Rahimi
- first_name: Robert
full_name: Harris, Robert A
last_name: Harris
- first_name: Matthew
full_name: State, Matthew W
last_name: State
- first_name: Joseph
full_name: Gleeson, Joseph G
last_name: Gleeson
citation:
ama: Novarino G, El Fishawy P, Kayserili H, et al. Mutations in BCKD-kinase lead
to a potentially treatable form of autism with epilepsy. Science. 2012;338(6105):394-397.
doi:10.1126/science.1224631
apa: Novarino, G., El Fishawy, P., Kayserili, H., Meguid, N., Scott, E., Schroth,
J., … Gleeson, J. (2012). Mutations in BCKD-kinase lead to a potentially treatable
form of autism with epilepsy. Science. American Association for the Advancement
of Science. https://doi.org/10.1126/science.1224631
chicago: Novarino, Gaia, Paul El Fishawy, Hülya Kayserili, Nagwa Meguid, Eric Scott,
Jana Schroth, Jennifer Silhavy, et al. “Mutations in BCKD-Kinase Lead to a Potentially
Treatable Form of Autism with Epilepsy.” Science. American Association
for the Advancement of Science, 2012. https://doi.org/10.1126/science.1224631.
ieee: G. Novarino et al., “Mutations in BCKD-kinase lead to a potentially
treatable form of autism with epilepsy,” Science, vol. 338, no. 6105. American
Association for the Advancement of Science, pp. 394–397, 2012.
ista: Novarino G, El Fishawy P, Kayserili H, Meguid N, Scott E, Schroth J, Silhavy
J, Kara M, Khalil R, Ben Omran T, Ercan Sencicek A, Hashish A, Sanders S, Gupta
A, Hashem H, Matern D, Gabriel S, Sweetman L, Rahimi Y, Harris R, State M, Gleeson
J. 2012. Mutations in BCKD-kinase lead to a potentially treatable form of autism
with epilepsy. Science. 338(6105), 394–397.
mla: Novarino, Gaia, et al. “Mutations in BCKD-Kinase Lead to a Potentially Treatable
Form of Autism with Epilepsy.” Science, vol. 338, no. 6105, American Association
for the Advancement of Science, 2012, pp. 394–97, doi:10.1126/science.1224631.
short: G. Novarino, P. El Fishawy, H. Kayserili, N. Meguid, E. Scott, J. Schroth,
J. Silhavy, M. Kara, R. Khalil, T. Ben Omran, A. Ercan Sencicek, A. Hashish, S.
Sanders, A. Gupta, H. Hashem, D. Matern, S. Gabriel, L. Sweetman, Y. Rahimi, R.
Harris, M. State, J. Gleeson, Science 338 (2012) 394–397.
date_created: 2018-12-11T11:56:56Z
date_published: 2012-10-19T00:00:00Z
date_updated: 2021-01-12T06:56:43Z
day: '19'
doi: 10.1126/science.1224631
extern: 1
intvolume: ' 338'
issue: '6105'
month: '10'
page: 394 - 397
publication: Science
publication_status: published
publisher: American Association for the Advancement of Science
publist_id: '4613'
quality_controlled: 0
status: public
title: Mutations in BCKD-kinase lead to a potentially treatable form of autism with
epilepsy
type: journal_article
volume: 338
year: '2012'
...
---
_id: '2318'
abstract:
- lang: eng
text: 'We show that bosons interacting via pair potentials with negative scattering
length form bound states for a suitable number of particles. In other words, the
absence of many-particle bound states of any kind implies the non-negativity of
the scattering length of the interaction potential. '
acknowledgement: 'Partial financial support by NSERC '
author:
- first_name: Robert
full_name: Seiringer, Robert
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: Seiringer R. Absence of bound states implies non-negativity of the scattering
length. Journal of Spectral Theory. 2012;2(3):321-328. doi:10.4171/JST/31
apa: Seiringer, R. (2012). Absence of bound states implies non-negativity of the
scattering length. Journal of Spectral Theory. European Mathematical Society.
https://doi.org/10.4171/JST/31
chicago: Seiringer, Robert. “Absence of Bound States Implies Non-Negativity of the
Scattering Length.” Journal of Spectral Theory. European Mathematical Society,
2012. https://doi.org/10.4171/JST/31.
ieee: R. Seiringer, “Absence of bound states implies non-negativity of the scattering
length,” Journal of Spectral Theory, vol. 2, no. 3. European Mathematical
Society, pp. 321–328, 2012.
ista: Seiringer R. 2012. Absence of bound states implies non-negativity of the scattering
length. Journal of Spectral Theory. 2(3), 321–328.
mla: Seiringer, Robert. “Absence of Bound States Implies Non-Negativity of the Scattering
Length.” Journal of Spectral Theory, vol. 2, no. 3, European Mathematical
Society, 2012, pp. 321–28, doi:10.4171/JST/31.
short: R. Seiringer, Journal of Spectral Theory 2 (2012) 321–328.
date_created: 2018-12-11T11:56:58Z
date_published: 2012-06-24T00:00:00Z
date_updated: 2021-01-12T06:56:44Z
day: '24'
department:
- _id: RoSe
doi: 10.4171/JST/31
intvolume: ' 2'
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1204.0435
month: '06'
oa: 1
oa_version: Preprint
page: 321-328
publication: Journal of Spectral Theory
publication_status: published
publisher: European Mathematical Society
publist_id: '4609'
quality_controlled: '1'
status: public
title: Absence of bound states implies non-negativity of the scattering length
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 2
year: '2012'
...
---
_id: '2317'
abstract:
- lang: eng
text: 'We present a summary of our recent rigorous derivation of the celebrated
Ginzburg-Landau (GL) theory, starting from the microscopic Bardeen-Cooper-Schrieffer
(BCS) model. Close to the critical temperature, GL arises as an effective theory
on the macroscopic scale. The relevant scaling limit is semiclassical in nature,
and semiclassical analysis, with minimal regularity assumptions, plays an important
part in our proof. '
author:
- first_name: Rupert
full_name: Frank, Rupert L
last_name: Frank
- first_name: Christian
full_name: Hainzl, Christian
last_name: Hainzl
- first_name: Robert
full_name: Robert Seiringer
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
- first_name: Jan
full_name: Solovej, Jan P
last_name: Solovej
citation:
ama: 'Frank R, Hainzl C, Seiringer R, Solovej J. Microscopic derivation of the Ginzburg-Landau
model. In: World Scientific Publishing; 2012:575-583. doi:10.1142/9789814449243_0060'
apa: 'Frank, R., Hainzl, C., Seiringer, R., & Solovej, J. (2012). Microscopic
derivation of the Ginzburg-Landau model (pp. 575–583). Presented at the ICMP:
International Congress on Mathematical Physics, World Scientific Publishing. https://doi.org/10.1142/9789814449243_0060'
chicago: Frank, Rupert, Christian Hainzl, Robert Seiringer, and Jan Solovej. “Microscopic
Derivation of the Ginzburg-Landau Model,” 575–83. World Scientific Publishing,
2012. https://doi.org/10.1142/9789814449243_0060.
ieee: 'R. Frank, C. Hainzl, R. Seiringer, and J. Solovej, “Microscopic derivation
of the Ginzburg-Landau model,” presented at the ICMP: International Congress on
Mathematical Physics, 2012, pp. 575–583.'
ista: 'Frank R, Hainzl C, Seiringer R, Solovej J. 2012. Microscopic derivation of
the Ginzburg-Landau model. ICMP: International Congress on Mathematical Physics,
575–583.'
mla: Frank, Rupert, et al. Microscopic Derivation of the Ginzburg-Landau Model.
World Scientific Publishing, 2012, pp. 575–83, doi:10.1142/9789814449243_0060.
short: R. Frank, C. Hainzl, R. Seiringer, J. Solovej, in:, World Scientific Publishing,
2012, pp. 575–583.
conference:
name: 'ICMP: International Congress on Mathematical Physics'
date_created: 2018-12-11T11:56:57Z
date_published: 2012-08-01T00:00:00Z
date_updated: 2021-01-12T06:56:44Z
day: '01'
doi: 10.1142/9789814449243_0060
extern: 1
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1209.1080
month: '08'
oa: 1
page: 575 - 583
publication_status: published
publisher: World Scientific Publishing
publist_id: '4610'
quality_controlled: 0
status: public
title: Microscopic derivation of the Ginzburg-Landau model
type: conference
year: '2012'
...
---
_id: '2316'
abstract:
- lang: eng
text: 'We summarize our recent results on the ground state energy of multi-polaron
systems. In particular, we discuss stability and existence of the thermodynamic
limit, and we discuss the absence of binding in the case of large Coulomb repulsion
and the corresponding binding-unbinding transition. We also consider the Pekar-Tomasevich
approximation to the ground state energy and we study radial symmetry of the ground
state density. '
author:
- first_name: Rupert
full_name: Frank, Rupert L
last_name: Frank
- first_name: Élliott
full_name: Lieb, Élliott H
last_name: Lieb
- first_name: Robert
full_name: Robert Seiringer
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
- first_name: Lawrence
full_name: Thomas, Lawrence E
last_name: Thomas
citation:
ama: 'Frank R, Lieb É, Seiringer R, Thomas L. Ground state properties of multi-polaron
systems. In: World Scientific Publishing; 2012:477-485. doi:10.1142/9789814449243_0045'
apa: 'Frank, R., Lieb, É., Seiringer, R., & Thomas, L. (2012). Ground state
properties of multi-polaron systems (pp. 477–485). Presented at the ICMP: International
Congress on Mathematical Physics, World Scientific Publishing. https://doi.org/10.1142/9789814449243_0045'
chicago: Frank, Rupert, Élliott Lieb, Robert Seiringer, and Lawrence Thomas. “Ground
State Properties of Multi-Polaron Systems,” 477–85. World Scientific Publishing,
2012. https://doi.org/10.1142/9789814449243_0045.
ieee: 'R. Frank, É. Lieb, R. Seiringer, and L. Thomas, “Ground state properties
of multi-polaron systems,” presented at the ICMP: International Congress on Mathematical
Physics, 2012, pp. 477–485.'
ista: 'Frank R, Lieb É, Seiringer R, Thomas L. 2012. Ground state properties of
multi-polaron systems. ICMP: International Congress on Mathematical Physics, 477–485.'
mla: Frank, Rupert, et al. Ground State Properties of Multi-Polaron Systems.
World Scientific Publishing, 2012, pp. 477–85, doi:10.1142/9789814449243_0045.
short: R. Frank, É. Lieb, R. Seiringer, L. Thomas, in:, World Scientific Publishing,
2012, pp. 477–485.
conference:
name: 'ICMP: International Congress on Mathematical Physics'
date_created: 2018-12-11T11:56:57Z
date_published: 2012-08-01T00:00:00Z
date_updated: 2021-01-12T06:56:44Z
day: '01'
doi: 10.1142/9789814449243_0045
extern: 1
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1209.3717
month: '08'
oa: 1
page: 477 - 485
publication_status: published
publisher: World Scientific Publishing
publist_id: '4611'
quality_controlled: 0
status: public
title: Ground state properties of multi-polaron systems
type: conference
year: '2012'
...
---
_id: '237'
abstract:
- lang: eng
text: The Manin conjecture is established for Châtelet surfaces over Q aris-ing
as minimal proper smooth models of the surface Y 2 + Z 2 = f(X) in A 3 Q, where
f ∈ Z[X] is a totally reducible polynomial of degree 3 without repeated roots.
These surfaces do not satisfy weak approximation.
acknowledgement: "EP/E053262/1\tEngineering and Physical Sciences Research Council"
author:
- first_name: Régis
full_name: de la Bretèche, Régis
last_name: De La Bretèche
- first_name: Timothy D
full_name: Timothy Browning
id: 35827D50-F248-11E8-B48F-1D18A9856A87
last_name: Browning
orcid: 0000-0002-8314-0177
- first_name: Emmanuel
full_name: Peyre, Emmanuel
last_name: Peyre
citation:
ama: De La Bretèche R, Browning TD, Peyre E. On Manin’s conjecture for a family
of Châtelet surfaces. Annals of Mathematics. 2012;175(1):297-343. doi:10.4007/annals.2012.175.1.8
apa: De La Bretèche, R., Browning, T. D., & Peyre, E. (2012). On Manin’s conjecture
for a family of Châtelet surfaces. Annals of Mathematics. Princeton University
Press. https://doi.org/10.4007/annals.2012.175.1.8
chicago: De La Bretèche, Régis, Timothy D Browning, and Emmanuel Peyre. “On Manin’s
Conjecture for a Family of Châtelet Surfaces.” Annals of Mathematics. Princeton
University Press, 2012. https://doi.org/10.4007/annals.2012.175.1.8.
ieee: R. De La Bretèche, T. D. Browning, and E. Peyre, “On Manin’s conjecture for
a family of Châtelet surfaces,” Annals of Mathematics, vol. 175, no. 1.
Princeton University Press, pp. 297–343, 2012.
ista: De La Bretèche R, Browning TD, Peyre E. 2012. On Manin’s conjecture for a
family of Châtelet surfaces. Annals of Mathematics. 175(1), 297–343.
mla: De La Bretèche, Régis, et al. “On Manin’s Conjecture for a Family of Châtelet
Surfaces.” Annals of Mathematics, vol. 175, no. 1, Princeton University
Press, 2012, pp. 297–343, doi:10.4007/annals.2012.175.1.8.
short: R. De La Bretèche, T.D. Browning, E. Peyre, Annals of Mathematics 175 (2012)
297–343.
date_created: 2018-12-11T11:45:22Z
date_published: 2012-01-01T00:00:00Z
date_updated: 2021-01-12T06:57:04Z
day: '01'
doi: 10.4007/annals.2012.175.1.8
extern: 1
intvolume: ' 175'
issue: '1'
month: '01'
page: 297 - 343
publication: Annals of Mathematics
publication_status: published
publisher: Princeton University Press
publist_id: '7667'
quality_controlled: 0
status: public
title: On Manin's conjecture for a family of Châtelet surfaces
type: journal_article
volume: 175
year: '2012'
...
---
_id: '238'
abstract:
- lang: eng
text: For given positive integers a, b, q we investigate the density of solutions
(x, y) ∈ Z2 to congruences ax + by2 ≡ 0 mod q.
acknowledgement: "EP/E053262/1\tEngineering and Physical Sciences Research Council"
author:
- first_name: Stephan
full_name: Baier, Stephan
last_name: Baier
- first_name: Timothy D
full_name: Timothy Browning
id: 35827D50-F248-11E8-B48F-1D18A9856A87
last_name: Browning
orcid: 0000-0002-8314-0177
citation:
ama: Baier S, Browning TD. Inhomogeneous quadratic congruences. Functiones et
Approximatio, Commentarii Mathematici. 2012;47(2):267-286. doi:10.7169/facm/2012.47.2.9
apa: Baier, S., & Browning, T. D. (2012). Inhomogeneous quadratic congruences.
Functiones et Approximatio, Commentarii Mathematici. Adam Mickiewicz University
Press. https://doi.org/10.7169/facm/2012.47.2.9
chicago: Baier, Stephan, and Timothy D Browning. “Inhomogeneous Quadratic Congruences.”
Functiones et Approximatio, Commentarii Mathematici. Adam Mickiewicz University
Press, 2012. https://doi.org/10.7169/facm/2012.47.2.9.
ieee: S. Baier and T. D. Browning, “Inhomogeneous quadratic congruences,” Functiones
et Approximatio, Commentarii Mathematici, vol. 47, no. 2. Adam Mickiewicz
University Press, pp. 267–286, 2012.
ista: Baier S, Browning TD. 2012. Inhomogeneous quadratic congruences. Functiones
et Approximatio, Commentarii Mathematici. 47(2), 267–286.
mla: Baier, Stephan, and Timothy D. Browning. “Inhomogeneous Quadratic Congruences.”
Functiones et Approximatio, Commentarii Mathematici, vol. 47, no. 2, Adam
Mickiewicz University Press, 2012, pp. 267–86, doi:10.7169/facm/2012.47.2.9.
short: S. Baier, T.D. Browning, Functiones et Approximatio, Commentarii Mathematici
47 (2012) 267–286.
date_created: 2018-12-11T11:45:22Z
date_published: 2012-12-20T00:00:00Z
date_updated: 2021-01-12T06:57:08Z
day: '20'
doi: 10.7169/facm/2012.47.2.9
extern: 1
intvolume: ' 47'
issue: '2'
month: '12'
page: 267 - 286
publication: Functiones et Approximatio, Commentarii Mathematici
publication_status: published
publisher: Adam Mickiewicz University Press
publist_id: '7666'
quality_controlled: 0
status: public
title: Inhomogeneous quadratic congruences
type: journal_article
volume: 47
year: '2012'
...
---
_id: '2399'
abstract:
- lang: eng
text: |
Bose–Einstein condensation (BEC) in cold atomic gases was first achieved experimentally in 1995 [1, 6]. After initial failed attempts with spin-polarized atomic hydrogen, the first successful demonstrations of this phenomenon used gases of rubidium and sodium atoms, respectively. Since then there has been a surge of activity in this field, with ingenious experiments putting forth more and more astonishing results about the behavior of matter at very cold temperatures.
alternative_title:
- Lecture Notes in Mathematics
author:
- first_name: Robert
full_name: Robert Seiringer
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: 'Seiringer R. Cold quantum gases and bose einstein condensation. In: Rivasseau
V, Seiringer R, Solovej J, Spencer T, eds. Quantum Many Body Systems. Vol
2051. Springer; 2012:55-92. doi:10.1007/978-3-642-29511-9_2'
apa: Seiringer, R. (2012). Cold quantum gases and bose einstein condensation. In
V. Rivasseau, R. Seiringer, J. Solovej, & T. Spencer (Eds.), Quantum Many
Body Systems (Vol. 2051, pp. 55–92). Springer. https://doi.org/10.1007/978-3-642-29511-9_2
chicago: Seiringer, Robert. “Cold Quantum Gases and Bose Einstein Condensation.”
In Quantum Many Body Systems, edited by Vincent Rivasseau, Robert Seiringer,
Jan Solovej, and Thomas Spencer, 2051:55–92. Springer, 2012. https://doi.org/10.1007/978-3-642-29511-9_2.
ieee: R. Seiringer, “Cold quantum gases and bose einstein condensation,” in Quantum
Many Body Systems, vol. 2051, V. Rivasseau, R. Seiringer, J. Solovej, and
T. Spencer, Eds. Springer, 2012, pp. 55–92.
ista: 'Seiringer R. 2012.Cold quantum gases and bose einstein condensation. In:
Quantum Many Body Systems. Lecture Notes in Mathematics, vol. 2051, 55–92.'
mla: Seiringer, Robert. “Cold Quantum Gases and Bose Einstein Condensation.” Quantum
Many Body Systems, edited by Vincent Rivasseau et al., vol. 2051, Springer,
2012, pp. 55–92, doi:10.1007/978-3-642-29511-9_2.
short: R. Seiringer, in:, V. Rivasseau, R. Seiringer, J. Solovej, T. Spencer (Eds.),
Quantum Many Body Systems, Springer, 2012, pp. 55–92.
date_created: 2018-12-11T11:57:26Z
date_published: 2012-01-01T00:00:00Z
date_updated: 2021-01-12T06:57:14Z
day: '01'
doi: 10.1007/978-3-642-29511-9_2
editor:
- first_name: Vincent
full_name: Rivasseau, Vincent
last_name: Rivasseau
- first_name: Robert
full_name: Robert Seiringer
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
- first_name: Jan
full_name: Solovej, Jan P
last_name: Solovej
- first_name: Thomas
full_name: Spencer, Thomas
last_name: Spencer
extern: 1
intvolume: ' 2051'
month: '01'
page: 55 - 92
publication: Quantum Many Body Systems
publication_status: published
publisher: Springer
publist_id: '4526'
quality_controlled: 0
status: public
title: Cold quantum gases and bose einstein condensation
type: book_chapter
volume: 2051
year: '2012'
...
---
_id: '2394'
abstract:
- lang: eng
text: We study the BCS gap equation for a Fermi gas with unequal population of spin-up
and spin-down states. For cosh (δ μ/T) ≤ 2, with T the temperature and δμ the
chemical potential difference, the question of existence of non-trivial solutions
can be reduced to spectral properties of a linear operator, similar to the unpolarized
case studied previously in [Frank, R. L., Hainzl, C., Naboko, S., and Seiringer,
R., J., Geom. Anal.17, 559-567 (2007)10.1007/BF02937429; Hainzl, C., Hamza, E.,
Seiringer, R., and Solovej, J. P., Commun., Math. Phys.281, 349-367 (2008)10.1007/s00220-008-0489-2;
and Hainzl, C. and Seiringer, R., Phys. Rev. B77, 184517-110 435 (2008)]10.1103/PhysRevB.77.184517.
For cosh (δ μ/T) > 2 the phase diagram is more complicated, however. We derive
upper and lower bounds for the critical temperature, and study their behavior
in the small coupling limit.
author:
- first_name: Abraham
full_name: Freiji, Abraham
last_name: Freiji
- first_name: Christian
full_name: Hainzl, Christian
last_name: Hainzl
- first_name: Robert
full_name: Robert Seiringer
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: Freiji A, Hainzl C, Seiringer R. The gap equation for spin-polarized fermions.
Journal of Mathematical Physics. 2012;53(1). doi:10.1063/1.3670747
apa: Freiji, A., Hainzl, C., & Seiringer, R. (2012). The gap equation for spin-polarized
fermions. Journal of Mathematical Physics. American Institute of Physics.
https://doi.org/10.1063/1.3670747
chicago: Freiji, Abraham, Christian Hainzl, and Robert Seiringer. “The Gap Equation
for Spin-Polarized Fermions.” Journal of Mathematical Physics. American
Institute of Physics, 2012. https://doi.org/10.1063/1.3670747.
ieee: A. Freiji, C. Hainzl, and R. Seiringer, “The gap equation for spin-polarized
fermions,” Journal of Mathematical Physics, vol. 53, no. 1. American Institute
of Physics, 2012.
ista: Freiji A, Hainzl C, Seiringer R. 2012. The gap equation for spin-polarized
fermions. Journal of Mathematical Physics. 53(1).
mla: Freiji, Abraham, et al. “The Gap Equation for Spin-Polarized Fermions.” Journal
of Mathematical Physics, vol. 53, no. 1, American Institute of Physics, 2012,
doi:10.1063/1.3670747.
short: A. Freiji, C. Hainzl, R. Seiringer, Journal of Mathematical Physics 53 (2012).
date_created: 2018-12-11T11:57:25Z
date_published: 2012-01-01T00:00:00Z
date_updated: 2021-01-12T06:57:13Z
day: '01'
doi: 10.1063/1.3670747
extern: 1
intvolume: ' 53'
issue: '1'
month: '01'
publication: Journal of Mathematical Physics
publication_status: published
publisher: American Institute of Physics
publist_id: '4532'
quality_controlled: 0
status: public
title: The gap equation for spin-polarized fermions
type: journal_article
volume: 53
year: '2012'
...
---
_id: '2395'
abstract:
- lang: eng
text: 'We give the first rigorous derivation of the celebrated Ginzburg-Landau (GL)
theory, starting from the microscopic Bardeen-Cooper-Schrieffer (BCS) model. Close
to the critical temperature, GL arises as an effective theory on the macroscopic
scale. The relevant scaling limit is semiclassical in nature, and semiclassical
analysis, with minimal regularity assumptions, plays an important part in our
proof. '
author:
- first_name: Rupert
full_name: Frank, Rupert L
last_name: Frank
- first_name: Christian
full_name: Hainzl, Christian
last_name: Hainzl
- first_name: Robert
full_name: Robert Seiringer
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
- first_name: Jan
full_name: Solovej, Jan P
last_name: Solovej
citation:
ama: Frank R, Hainzl C, Seiringer R, Solovej J. Microscopic derivation of Ginzburg-Landau
theory. Journal of the American Mathematical Society. 2012;25(3):667-713.
doi:10.1090/S0894-0347-2012-00735-8
apa: Frank, R., Hainzl, C., Seiringer, R., & Solovej, J. (2012). Microscopic
derivation of Ginzburg-Landau theory. Journal of the American Mathematical
Society. American Mathematical Society. https://doi.org/10.1090/S0894-0347-2012-00735-8
chicago: Frank, Rupert, Christian Hainzl, Robert Seiringer, and Jan Solovej. “Microscopic
Derivation of Ginzburg-Landau Theory.” Journal of the American Mathematical
Society. American Mathematical Society, 2012. https://doi.org/10.1090/S0894-0347-2012-00735-8.
ieee: R. Frank, C. Hainzl, R. Seiringer, and J. Solovej, “Microscopic derivation
of Ginzburg-Landau theory,” Journal of the American Mathematical Society,
vol. 25, no. 3. American Mathematical Society, pp. 667–713, 2012.
ista: Frank R, Hainzl C, Seiringer R, Solovej J. 2012. Microscopic derivation of
Ginzburg-Landau theory. Journal of the American Mathematical Society. 25(3), 667–713.
mla: Frank, Rupert, et al. “Microscopic Derivation of Ginzburg-Landau Theory.” Journal
of the American Mathematical Society, vol. 25, no. 3, American Mathematical
Society, 2012, pp. 667–713, doi:10.1090/S0894-0347-2012-00735-8.
short: R. Frank, C. Hainzl, R. Seiringer, J. Solovej, Journal of the American Mathematical
Society 25 (2012) 667–713.
date_created: 2018-12-11T11:57:25Z
date_published: 2012-01-01T00:00:00Z
date_updated: 2021-01-12T06:57:13Z
day: '01'
doi: 10.1090/S0894-0347-2012-00735-8
extern: 1
intvolume: ' 25'
issue: '3'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1102.4001
month: '01'
oa: 1
page: 667 - 713
publication: Journal of the American Mathematical Society
publication_status: published
publisher: American Mathematical Society
publist_id: '4531'
quality_controlled: 0
status: public
title: Microscopic derivation of Ginzburg-Landau theory
type: journal_article
volume: 25
year: '2012'
...
---
_id: '2396'
abstract:
- lang: eng
text: A positive temperature analogue of the scattering length of a potential V
can be defined via integrating the difference of the heat kernels of -Δ and, with
Δ the Laplacian. An upper bound on this quantity is a crucial input in the derivation
of a bound on the critical temperature of a dilute Bose gas (Seiringer and Ueltschi
in Phys Rev B 80:014502, 2009). In (Seiringer and Ueltschi in Phys Rev B 80:014502,
2009), a bound was given in the case of finite range potentials and sufficiently
low temperature. In this paper, we improve the bound and extend it to potentials
of infinite range.
author:
- first_name: Benjamin
full_name: Landon, Benjamin
last_name: Landon
- first_name: Robert
full_name: Robert Seiringer
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: Landon B, Seiringer R. The scattering length at positive temperature. Letters
in Mathematical Physics. 2012;100(3):237-243. doi:10.1007/s11005-012-0566-5
apa: Landon, B., & Seiringer, R. (2012). The scattering length at positive temperature.
Letters in Mathematical Physics. Springer. https://doi.org/10.1007/s11005-012-0566-5
chicago: Landon, Benjamin, and Robert Seiringer. “The Scattering Length at Positive
Temperature.” Letters in Mathematical Physics. Springer, 2012. https://doi.org/10.1007/s11005-012-0566-5.
ieee: B. Landon and R. Seiringer, “The scattering length at positive temperature,”
Letters in Mathematical Physics, vol. 100, no. 3. Springer, pp. 237–243,
2012.
ista: Landon B, Seiringer R. 2012. The scattering length at positive temperature.
Letters in Mathematical Physics. 100(3), 237–243.
mla: Landon, Benjamin, and Robert Seiringer. “The Scattering Length at Positive
Temperature.” Letters in Mathematical Physics, vol. 100, no. 3, Springer,
2012, pp. 237–43, doi:10.1007/s11005-012-0566-5.
short: B. Landon, R. Seiringer, Letters in Mathematical Physics 100 (2012) 237–243.
date_created: 2018-12-11T11:57:25Z
date_published: 2012-06-01T00:00:00Z
date_updated: 2021-01-12T06:57:13Z
day: '01'
doi: 10.1007/s11005-012-0566-5
extern: 1
intvolume: ' 100'
issue: '3'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1111.1683
month: '06'
oa: 1
page: 237 - 243
publication: Letters in Mathematical Physics
publication_status: published
publisher: Springer
publist_id: '4529'
quality_controlled: 0
status: public
title: The scattering length at positive temperature
type: journal_article
volume: 100
year: '2012'
...
---
_id: '2398'
abstract:
- lang: eng
text: We extend the mathematical theory of quantum hypothesis testing to the general
W*-algebraic setting and explore its relation with recent developments in non-equilibrium
quantum statistical mechanics. In particular, we relate the large deviation principle
for the full counting statistics of entropy flow to quantum hypothesis testing
of the arrow of time.
author:
- first_name: Vojkan
full_name: Jakšić, Vojkan
last_name: Jakšić
- first_name: Yoshiko
full_name: Ogata, Yoshiko
last_name: Ogata
- first_name: Claude
full_name: Pillet, Claude A
last_name: Pillet
- first_name: Robert
full_name: Robert Seiringer
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: Jakšić V, Ogata Y, Pillet C, Seiringer R. Quantum hypothesis testing and non-equilibrium
statistical mechanics. Reviews in Mathematical Physics. 2012;24(6). doi:10.1142/S0129055X12300026
apa: Jakšić, V., Ogata, Y., Pillet, C., & Seiringer, R. (2012). Quantum hypothesis
testing and non-equilibrium statistical mechanics. Reviews in Mathematical
Physics. World Scientific Publishing. https://doi.org/10.1142/S0129055X12300026
chicago: Jakšić, Vojkan, Yoshiko Ogata, Claude Pillet, and Robert Seiringer. “Quantum
Hypothesis Testing and Non-Equilibrium Statistical Mechanics.” Reviews in Mathematical
Physics. World Scientific Publishing, 2012. https://doi.org/10.1142/S0129055X12300026.
ieee: V. Jakšić, Y. Ogata, C. Pillet, and R. Seiringer, “Quantum hypothesis testing
and non-equilibrium statistical mechanics,” Reviews in Mathematical Physics,
vol. 24, no. 6. World Scientific Publishing, 2012.
ista: Jakšić V, Ogata Y, Pillet C, Seiringer R. 2012. Quantum hypothesis testing
and non-equilibrium statistical mechanics. Reviews in Mathematical Physics. 24(6).
mla: Jakšić, Vojkan, et al. “Quantum Hypothesis Testing and Non-Equilibrium Statistical
Mechanics.” Reviews in Mathematical Physics, vol. 24, no. 6, World Scientific
Publishing, 2012, doi:10.1142/S0129055X12300026.
short: V. Jakšić, Y. Ogata, C. Pillet, R. Seiringer, Reviews in Mathematical Physics
24 (2012).
date_created: 2018-12-11T11:57:26Z
date_published: 2012-07-01T00:00:00Z
date_updated: 2020-07-14T12:45:40Z
day: '01'
doi: 10.1142/S0129055X12300026
extern: 1
intvolume: ' 24'
issue: '6'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1109.3804
month: '07'
oa: 1
publication: Reviews in Mathematical Physics
publication_status: published
publisher: World Scientific Publishing
publist_id: '4528'
quality_controlled: 0
status: public
title: Quantum hypothesis testing and non-equilibrium statistical mechanics
type: review
volume: 24
year: '2012'
...
---
_id: '2397'
abstract:
- lang: eng
text: We consider the low-density limit of a Fermi gas in the BCS approximation.
We show that if the interaction potential allows for a two-particle bound state,
the system at zero temperature is well approximated by the Gross-Pitaevskii functional,
describing a Bose-Einstein condensate of fermion pairs.
author:
- first_name: Christian
full_name: Hainzl, Christian
last_name: Hainzl
- first_name: Robert
full_name: Robert Seiringer
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: Hainzl C, Seiringer R. Low density limit of BCS theory and Bose-Einstein condensation
of Fermion pairs. Letters in Mathematical Physics. 2012;100(2):119-138.
doi:10.1007/s11005-011-0535-4
apa: Hainzl, C., & Seiringer, R. (2012). Low density limit of BCS theory and
Bose-Einstein condensation of Fermion pairs. Letters in Mathematical Physics.
Springer. https://doi.org/10.1007/s11005-011-0535-4
chicago: Hainzl, Christian, and Robert Seiringer. “Low Density Limit of BCS Theory
and Bose-Einstein Condensation of Fermion Pairs.” Letters in Mathematical Physics.
Springer, 2012. https://doi.org/10.1007/s11005-011-0535-4.
ieee: C. Hainzl and R. Seiringer, “Low density limit of BCS theory and Bose-Einstein
condensation of Fermion pairs,” Letters in Mathematical Physics, vol. 100,
no. 2. Springer, pp. 119–138, 2012.
ista: Hainzl C, Seiringer R. 2012. Low density limit of BCS theory and Bose-Einstein
condensation of Fermion pairs. Letters in Mathematical Physics. 100(2), 119–138.
mla: Hainzl, Christian, and Robert Seiringer. “Low Density Limit of BCS Theory and
Bose-Einstein Condensation of Fermion Pairs.” Letters in Mathematical Physics,
vol. 100, no. 2, Springer, 2012, pp. 119–38, doi:10.1007/s11005-011-0535-4.
short: C. Hainzl, R. Seiringer, Letters in Mathematical Physics 100 (2012) 119–138.
date_created: 2018-12-11T11:57:25Z
date_published: 2012-05-01T00:00:00Z
date_updated: 2021-01-12T06:57:14Z
day: '01'
doi: 10.1007/s11005-011-0535-4
extern: 1
intvolume: ' 100'
issue: '2'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1105.1100
month: '05'
oa: 1
page: 119 - 138
publication: Letters in Mathematical Physics
publication_status: published
publisher: Springer
publist_id: '4530'
quality_controlled: 0
status: public
title: Low density limit of BCS theory and Bose-Einstein condensation of Fermion pairs
type: journal_article
volume: 100
year: '2012'
...