--- _id: '2201' abstract: - lang: eng text: We study the growth dynamics of ordered structures of strongly interacting polar molecules in optical lattices. Using a dipole blockade of microwave excitations, we map the system onto an interacting spin-1/2 model possessing ground states with crystalline order, and describe a way to prepare these states by nonadiabatically driving the transitions between molecular rotational levels. The proposed technique bypasses the need to cross a phase transition and allows for the creation of ordered domains of considerably larger size compared to approaches relying on adiabatic preparation. article_processing_charge: No author: - first_name: Mikhail full_name: Lemeshko, Mikhail id: 37CB05FA-F248-11E8-B48F-1D18A9856A87 last_name: Lemeshko orcid: 0000-0002-6990-7802 - first_name: Roman full_name: Krems, Roman last_name: Krems - first_name: Hendrik full_name: Weimer, Hendrik last_name: Weimer citation: ama: Lemeshko M, Krems R, Weimer H. Nonadiabatic preparation of spin crystals with ultracold polar molecules. Physical Review Letters. 2012;109(3). doi:10.1103/PhysRevLett.109.035301 apa: Lemeshko, M., Krems, R., & Weimer, H. (2012). Nonadiabatic preparation of spin crystals with ultracold polar molecules. Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.109.035301 chicago: Lemeshko, Mikhail, Roman Krems, and Hendrik Weimer. “Nonadiabatic Preparation of Spin Crystals with Ultracold Polar Molecules.” Physical Review Letters. American Physical Society, 2012. https://doi.org/10.1103/PhysRevLett.109.035301. ieee: M. Lemeshko, R. Krems, and H. Weimer, “Nonadiabatic preparation of spin crystals with ultracold polar molecules,” Physical Review Letters, vol. 109, no. 3. American Physical Society, 2012. ista: Lemeshko M, Krems R, Weimer H. 2012. Nonadiabatic preparation of spin crystals with ultracold polar molecules. Physical Review Letters. 109(3). mla: Lemeshko, Mikhail, et al. “Nonadiabatic Preparation of Spin Crystals with Ultracold Polar Molecules.” Physical Review Letters, vol. 109, no. 3, American Physical Society, 2012, doi:10.1103/PhysRevLett.109.035301. short: M. Lemeshko, R. Krems, H. Weimer, Physical Review Letters 109 (2012). date_created: 2018-12-11T11:56:17Z date_published: 2012-07-16T00:00:00Z date_updated: 2021-11-16T08:01:02Z day: '16' doi: 10.1103/PhysRevLett.109.035301 extern: '1' intvolume: ' 109' issue: '3' language: - iso: eng main_file_link: - open_access: '1' url: http://arxiv.org/abs/1203.0010 month: '07' oa: 1 oa_version: None publication: Physical Review Letters publication_status: published publisher: American Physical Society publist_id: '4772' related_material: link: - relation: erratum url: https://doi.org/10.1103/PhysRevLett.109.049901 status: public title: Nonadiabatic preparation of spin crystals with ultracold polar molecules type: journal_article user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9 volume: 109 year: '2012' ... --- _id: '2202' abstract: - lang: eng text: We propose a method for sensitive parallel detection of low-frequency electromagnetic fields based on the fine structure interactions in paramagnetic polar molecules. Compared to the recently implemented scheme employing ultracold 87Rb atoms by Böhi, the technique based on molecules offers a 100-fold higher sensitivity, the possibility to measure both the electric and magnetic field components, and a probe of a wide range of frequencies from the dc limit to the THz regime. author: - first_name: Sergey full_name: Alyabyshev, Sergey V last_name: Alyabyshev - first_name: Mikhail full_name: Mikhail Lemeshko id: 37CB05FA-F248-11E8-B48F-1D18A9856A87 last_name: Lemeshko orcid: 0000-0002-6990-7802 - first_name: Roman full_name: Krems, Roman V last_name: Krems citation: ama: Alyabyshev S, Lemeshko M, Krems R. Sensitive imaging of electromagnetic fields with paramagnetic polar molecules. Physical Review A - Atomic, Molecular, and Optical Physics. 2012;86(1). doi:10.1103/PhysRevA.86.013409 apa: Alyabyshev, S., Lemeshko, M., & Krems, R. (2012). Sensitive imaging of electromagnetic fields with paramagnetic polar molecules. Physical Review A - Atomic, Molecular, and Optical Physics. American Physical Society. https://doi.org/10.1103/PhysRevA.86.013409 chicago: Alyabyshev, Sergey, Mikhail Lemeshko, and Roman Krems. “Sensitive Imaging of Electromagnetic Fields with Paramagnetic Polar Molecules.” Physical Review A - Atomic, Molecular, and Optical Physics. American Physical Society, 2012. https://doi.org/10.1103/PhysRevA.86.013409. ieee: S. Alyabyshev, M. Lemeshko, and R. Krems, “Sensitive imaging of electromagnetic fields with paramagnetic polar molecules,” Physical Review A - Atomic, Molecular, and Optical Physics, vol. 86, no. 1. American Physical Society, 2012. ista: Alyabyshev S, Lemeshko M, Krems R. 2012. Sensitive imaging of electromagnetic fields with paramagnetic polar molecules. Physical Review A - Atomic, Molecular, and Optical Physics. 86(1). mla: Alyabyshev, Sergey, et al. “Sensitive Imaging of Electromagnetic Fields with Paramagnetic Polar Molecules.” Physical Review A - Atomic, Molecular, and Optical Physics, vol. 86, no. 1, American Physical Society, 2012, doi:10.1103/PhysRevA.86.013409. short: S. Alyabyshev, M. Lemeshko, R. Krems, Physical Review A - Atomic, Molecular, and Optical Physics 86 (2012). date_created: 2018-12-11T11:56:18Z date_published: 2012-07-13T00:00:00Z date_updated: 2021-01-12T06:55:57Z day: '13' doi: 10.1103/PhysRevA.86.013409 extern: 1 intvolume: ' 86' issue: '1' main_file_link: - open_access: '1' url: http://arxiv.org/abs/1202.1857 month: '07' oa: 1 publication: Physical Review A - Atomic, Molecular, and Optical Physics publication_status: published publisher: American Physical Society publist_id: '4773' quality_controlled: 0 status: public title: Sensitive imaging of electromagnetic fields with paramagnetic polar molecules type: journal_article volume: 86 year: '2012' ... --- _id: '2263' abstract: - lang: eng text: Nestin-cre transgenic mice have been widely used to direct recombination to neural stem cells (NSCs) and intermediate neural progenitor cells (NPCs). Here we report that a readily utilized, and the only commercially available, Nestin-cre line is insufficient for directing recombination in early embryonic NSCs and NPCs. Analysis of recombination efficiency in multiple cre-dependent reporters and a genetic mosaic line revealed consistent temporal and spatial patterns of recombination in NSCs and NPCs. For comparison we utilized a knock-in Emx1cre line and found robust recombination in NSCs and NPCs in ventricular and subventricular zones of the cerebral cortices as early as embryonic day 12.5. In addition we found that the rate of Nestin-cre driven recombination only reaches sufficiently high levels in NSCs and NPCs during late embryonic and early postnatal periods. These findings are important when commercially available cre lines are considered for directing recombination to embryonic NSCs and NPCs. author: - first_name: Huixuan full_name: Liang, Huixuan last_name: Liang - first_name: Simon full_name: Hippenmeyer, Simon id: 37B36620-F248-11E8-B48F-1D18A9856A87 last_name: Hippenmeyer orcid: 0000-0003-2279-1061 - first_name: H. full_name: Ghashghaei, H. last_name: Ghashghaei citation: ama: Liang H, Hippenmeyer S, Ghashghaei H. A Nestin-cre transgenic mouse is insufficient for recombination in early embryonic neural progenitors. Biology open. 2012;1(12):1200-1203. doi:10.1242/bio.20122287 apa: Liang, H., Hippenmeyer, S., & Ghashghaei, H. (2012). A Nestin-cre transgenic mouse is insufficient for recombination in early embryonic neural progenitors. Biology Open. The Company of Biologists. https://doi.org/10.1242/bio.20122287 chicago: Liang, Huixuan, Simon Hippenmeyer, and H. Ghashghaei. “A Nestin-Cre Transgenic Mouse Is Insufficient for Recombination in Early Embryonic Neural Progenitors.” Biology Open. The Company of Biologists, 2012. https://doi.org/10.1242/bio.20122287. ieee: H. Liang, S. Hippenmeyer, and H. Ghashghaei, “A Nestin-cre transgenic mouse is insufficient for recombination in early embryonic neural progenitors,” Biology open, vol. 1, no. 12. The Company of Biologists, pp. 1200–1203, 2012. ista: Liang H, Hippenmeyer S, Ghashghaei H. 2012. A Nestin-cre transgenic mouse is insufficient for recombination in early embryonic neural progenitors. Biology open. 1(12), 1200–1203. mla: Liang, Huixuan, et al. “A Nestin-Cre Transgenic Mouse Is Insufficient for Recombination in Early Embryonic Neural Progenitors.” Biology Open, vol. 1, no. 12, The Company of Biologists, 2012, pp. 1200–03, doi:10.1242/bio.20122287. short: H. Liang, S. Hippenmeyer, H. Ghashghaei, Biology Open 1 (2012) 1200–1203. date_created: 2018-12-11T11:56:38Z date_published: 2012-12-15T00:00:00Z date_updated: 2021-01-12T06:56:23Z day: '15' ddc: - '576' department: - _id: SiHi doi: 10.1242/bio.20122287 file: - access_level: open_access checksum: 605a1800b81227848c361fd6ba7d22ba content_type: application/pdf creator: system date_created: 2018-12-12T10:13:09Z date_updated: 2020-07-14T12:45:35Z file_id: '4990' file_name: IST-2015-387-v1+1_1200.full.pdf file_size: 726695 relation: main_file file_date_updated: 2020-07-14T12:45:35Z has_accepted_license: '1' intvolume: ' 1' issue: '12' language: - iso: eng license: https://creativecommons.org/licenses/by-nc-sa/4.0/ month: '12' oa: 1 oa_version: Published Version page: 1200 - 1203 publication: Biology open publication_status: published publisher: The Company of Biologists publist_id: '4682' pubrep_id: '387' quality_controlled: '1' scopus_import: 1 status: public title: A Nestin-cre transgenic mouse is insufficient for recombination in early embryonic neural progenitors tmp: image: /images/cc_by_nc_sa.png legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0) short: CC BY-NC-SA (4.0) type: journal_article user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87 volume: 1 year: '2012' ... --- _id: '2267' abstract: - lang: eng text: 'Capturing real-world objects with laser-scanning technology has become an everyday task. Recently, the acquisition of dynamic scenes at interactive frame rates has become feasible. A high-quality visualization of the resulting point cloud stream would require a per-frame reconstruction of object surfaces. Unfortunately, reconstruction computations are still too time-consuming to be applied interactively. In this paper we present a local surface reconstruction and visualization technique that provides interactive feedback for reasonably sized point clouds, while achieving high image quality. Our method is performed entirely on the GPU and in screen pace, exploiting the efficiency of the common rasterization pipeline. The approach is very general, as no assumption is made about point connectivity or sampling density. This naturally allows combining the outputs of multiple scanners in a single visualization, which is useful for many virtual and augmented reality applications. ' author: - first_name: Reinhold full_name: Preiner, Reinhold last_name: Preiner - first_name: Stefan full_name: Jeschke, Stefan id: 44D6411A-F248-11E8-B48F-1D18A9856A87 last_name: Jeschke - first_name: Michael full_name: Wimmer, Michael last_name: Wimmer citation: ama: 'Preiner R, Jeschke S, Wimmer M. Auto splats: Dynamic point cloud visualization on the GPU. In: Eurographics Association; 2012:139-148. doi:10.2312/EGPGV/EGPGV12/139-148' apa: 'Preiner, R., Jeschke, S., & Wimmer, M. (2012). Auto splats: Dynamic point cloud visualization on the GPU (pp. 139–148). Presented at the EGPGV: Eurographics Symposium on Parallel Graphics and Visualization, Calgari, Italy: Eurographics Association. https://doi.org/10.2312/EGPGV/EGPGV12/139-148' chicago: 'Preiner, Reinhold, Stefan Jeschke, and Michael Wimmer. “Auto Splats: Dynamic Point Cloud Visualization on the GPU,” 139–48. Eurographics Association, 2012. https://doi.org/10.2312/EGPGV/EGPGV12/139-148.' ieee: 'R. Preiner, S. Jeschke, and M. Wimmer, “Auto splats: Dynamic point cloud visualization on the GPU,” presented at the EGPGV: Eurographics Symposium on Parallel Graphics and Visualization, Calgari, Italy, 2012, pp. 139–148.' ista: 'Preiner R, Jeschke S, Wimmer M. 2012. Auto splats: Dynamic point cloud visualization on the GPU. EGPGV: Eurographics Symposium on Parallel Graphics and Visualization, 139–148.' mla: 'Preiner, Reinhold, et al. Auto Splats: Dynamic Point Cloud Visualization on the GPU. Eurographics Association, 2012, pp. 139–48, doi:10.2312/EGPGV/EGPGV12/139-148.' short: R. Preiner, S. Jeschke, M. Wimmer, in:, Eurographics Association, 2012, pp. 139–148. conference: end_date: 2012-05-14 location: Calgari, Italy name: 'EGPGV: Eurographics Symposium on Parallel Graphics and Visualization' start_date: 2012-05-13 date_created: 2018-12-11T11:56:40Z date_published: 2012-05-13T00:00:00Z date_updated: 2021-01-12T06:56:24Z day: '13' ddc: - '000' doi: 10.2312/EGPGV/EGPGV12/139-148 extern: '1' file: - access_level: open_access checksum: 5495bb6ee8662cd401b34afb04dfb40f content_type: application/pdf creator: system date_created: 2018-12-12T10:11:13Z date_updated: 2020-07-14T12:45:35Z file_id: '4866' file_name: IST-2016-572-v1+1_preiner_2012_AS-draft.pdf file_size: 14903860 relation: main_file file_date_updated: 2020-07-14T12:45:35Z has_accepted_license: '1' language: - iso: eng month: '05' oa: 1 oa_version: Submitted Version page: 139 - 148 publication_status: published publisher: Eurographics Association publist_id: '4677' pubrep_id: '572' quality_controlled: '1' status: public title: 'Auto splats: Dynamic point cloud visualization on the GPU' type: conference user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87 year: '2012' ... --- _id: '2262' abstract: - lang: eng text: 'Mosaic Analysis with Double Markers (MADM) is a method for generating genetically mosaic mice, in which sibling mutant and wild-type cells are labeled with different fluorescent markers. It is a powerful tool that enables analysis of gene function at the single cell level in vivo. It requires transgenic cassettes to be located between the centromere and the mutation in the gene of interest on the same chromosome. Here we compare procedures for introduction of MADM cassettes into new loci in the mouse genome, and describe new approaches for expanding the utility of MADM. We show that: 1) Targeted homologous recombination outperforms random transgenesis in generation of reliably expressed MADM cassettes, 2) MADM cassettes in new genomic loci need to be validated for biallelic and ubiquitous expression, 3) Recombination between MADM cassettes on different chromosomes can be used to study reciprocal chromosomal deletions/duplications, and 4) MADM can be modified to permit transgene expression by combining it with a binary expression system. The advances described in this study expand current, and enable new and more versatile applications of MADM.' acknowledgement: This work was supported by a National Institutes of Health grant to LL (R01-NS050835). BT was a Damon Runyon Fellow and was supported by the Damon Runyon Cancer Research Foundation Grant DRG-1819-04. KM was supported by the Japan Society for the Promotion of Science program for Research Abroad and Human Frontier Science Program Organization (LT00300/2007-L). SH was supported by postdoctoral fellowships from the European Molecular Biology Organization (ALTF 851-2005), Human Frontier Science Program Organization (LT00805/2006-L), and Swiss National Science Foundation (PA00P3_124160 and PA00P3_136482). HZ is a Pew Scholar in Biomedical Sciences, supported by The Pew Charitable Trusts. LL is an investigator of the Howard Hughes Medical Institute. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. author: - first_name: Bosiljka full_name: Tasic, Bosiljka last_name: Tasic - first_name: Kazunari full_name: Miyamichi, Kazunari last_name: Miyamichi - first_name: Simon full_name: Simon Hippenmeyer id: 37B36620-F248-11E8-B48F-1D18A9856A87 last_name: Hippenmeyer orcid: 0000-0003-2279-1061 - first_name: Vardhan full_name: Dani, Vardhan S. last_name: Dani - first_name: H. full_name: Zeng, H. last_name: Zeng - first_name: William full_name: Joo, William last_name: Joo - first_name: Hui full_name: Zong, Hui last_name: Zong - first_name: Yanru full_name: Chen-Tsai, Yanru last_name: Chen Tsai - first_name: Liqun full_name: Luo, Liqun last_name: Luo citation: ama: Tasic B, Miyamichi K, Hippenmeyer S, et al. Extensions of MADM (Mosaic Analysis with Double Markers) in Mice . PLoS One. 2012;7(3). doi:10.1371/journal.pone.0033332 apa: Tasic, B., Miyamichi, K., Hippenmeyer, S., Dani, V., Zeng, H., Joo, W., … Luo, L. (2012). Extensions of MADM (Mosaic Analysis with Double Markers) in Mice . PLoS One. Public Library of Science. https://doi.org/10.1371/journal.pone.0033332 chicago: Tasic, Bosiljka, Kazunari Miyamichi, Simon Hippenmeyer, Vardhan Dani, H. Zeng, William Joo, Hui Zong, Yanru Chen Tsai, and Liqun Luo. “Extensions of MADM (Mosaic Analysis with Double Markers) in Mice .” PLoS One. Public Library of Science, 2012. https://doi.org/10.1371/journal.pone.0033332. ieee: B. Tasic et al., “Extensions of MADM (Mosaic Analysis with Double Markers) in Mice ,” PLoS One, vol. 7, no. 3. Public Library of Science, 2012. ista: Tasic B, Miyamichi K, Hippenmeyer S, Dani V, Zeng H, Joo W, Zong H, Chen Tsai Y, Luo L. 2012. Extensions of MADM (Mosaic Analysis with Double Markers) in Mice . PLoS One. 7(3). mla: Tasic, Bosiljka, et al. “Extensions of MADM (Mosaic Analysis with Double Markers) in Mice .” PLoS One, vol. 7, no. 3, Public Library of Science, 2012, doi:10.1371/journal.pone.0033332. short: B. Tasic, K. Miyamichi, S. Hippenmeyer, V. Dani, H. Zeng, W. Joo, H. Zong, Y. Chen Tsai, L. Luo, PLoS One 7 (2012). date_created: 2018-12-11T11:56:38Z date_published: 2012-03-27T00:00:00Z date_updated: 2021-01-12T06:56:22Z day: '27' doi: 10.1371/journal.pone.0033332 extern: 1 intvolume: ' 7' issue: '3' month: '03' publication: PLoS One publication_status: published publisher: Public Library of Science publist_id: '4683' quality_controlled: 0 status: public title: 'Extensions of MADM (Mosaic Analysis with Double Markers) in Mice ' tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article volume: 7 year: '2012' ... --- _id: '2268' abstract: - lang: eng text: 'This paper presents an analytic formulation for anti-aliased sampling of 2D polygons and 3D polyhedra. Our framework allows the exact evaluation of the convolution integral with a linear function defined on the polytopes. The filter is a spherically symmetric polynomial of any order, supporting approximations to refined variants such as the Mitchell-Netravali filter family. This enables high-quality rasterization of triangles and tetrahedra with linearly interpolated vertex values to regular and non-regular grids. A closed form solution of the convolution is presented and an efficient implementation on the GPU using DirectX and CUDA C is described. ' acknowledgement: |- Funding was provided by the FWF grant P20768-N13. We want to thank the reviewers for their insightful and helpful remarks, Hang Si for making available TetGen and Stefan Bruckner for VolumeShop. alternative_title: - Computer Graphics Forum author: - first_name: Thomas full_name: Thomas Auzinger id: 4718F954-F248-11E8-B48F-1D18A9856A87 last_name: Auzinger orcid: 0000-0002-1546-3265 - first_name: Michael full_name: Guthe, Michael last_name: Guthe - first_name: Stefan full_name: Stefan Jeschke id: 44D6411A-F248-11E8-B48F-1D18A9856A87 last_name: Jeschke citation: ama: 'Auzinger T, Guthe M, Jeschke S. Analytic anti-aliasing of linear functions on polytopes. In: Vol 31. Wiley-Blackwell; 2012:335-344. doi:http://dx.doi.org/10.1111/j.1467-8659.2012.03012.x' apa: 'Auzinger, T., Guthe, M., & Jeschke, S. (2012). Analytic anti-aliasing of linear functions on polytopes (Vol. 31, pp. 335–344). Presented at the EUROGRAPHICS: European Association for Computer Graphics, Wiley-Blackwell. http://dx.doi.org/10.1111/j.1467-8659.2012.03012.x' chicago: Auzinger, Thomas, Michael Guthe, and Stefan Jeschke. “Analytic Anti-Aliasing of Linear Functions on Polytopes,” 31:335–44. Wiley-Blackwell, 2012. http://dx.doi.org/10.1111/j.1467-8659.2012.03012.x. ieee: 'T. Auzinger, M. Guthe, and S. Jeschke, “Analytic anti-aliasing of linear functions on polytopes,” presented at the EUROGRAPHICS: European Association for Computer Graphics, 2012, vol. 31, no. 121, pp. 335–344.' ista: 'Auzinger T, Guthe M, Jeschke S. 2012. Analytic anti-aliasing of linear functions on polytopes. EUROGRAPHICS: European Association for Computer Graphics, Computer Graphics Forum, vol. 31, 335–344.' mla: Auzinger, Thomas, et al. Analytic Anti-Aliasing of Linear Functions on Polytopes. Vol. 31, no. 121, Wiley-Blackwell, 2012, pp. 335–44, doi:http://dx.doi.org/10.1111/j.1467-8659.2012.03012.x. short: T. Auzinger, M. Guthe, S. Jeschke, in:, Wiley-Blackwell, 2012, pp. 335–344. conference: name: 'EUROGRAPHICS: European Association for Computer Graphics' date_created: 2018-12-11T11:56:40Z date_published: 2012-05-13T00:00:00Z date_updated: 2021-01-12T06:56:24Z day: '13' doi: http://dx.doi.org/10.1111/j.1467-8659.2012.03012.x extern: 1 intvolume: ' 31' issue: 121 main_file_link: - open_access: '1' url: https://www.cg.tuwien.ac.at/research/publications/2012/Auzinger_2012_AAA/ month: '05' oa: 1 page: 335 - 344 publication_status: published publisher: Wiley-Blackwell publist_id: '4676' quality_controlled: 0 status: public title: Analytic anti-aliasing of linear functions on polytopes type: conference volume: 31 year: '2012' ... --- _id: '2302' abstract: - lang: eng text: 'We introduce propagation models (PMs), a formalism able to express several kinds of equations that describe the behavior of biochemical reaction networks. Furthermore, we introduce the propagation abstract data type (PADT), which separates concerns regarding different numerical algorithms for the transient analysis of biochemical reaction networks from concerns regarding their implementation, thus allowing for portable and efficient solutions. The state of a propagation abstract data type is given by a vector that assigns mass values to a set of nodes, and its (next) operator propagates mass values through this set of nodes. We propose an approximate implementation of the (next) operator, based on threshold abstraction, which propagates only "significant" mass values and thus achieves a compromise between efficiency and accuracy. Finally, we give three use cases for propagation models: the chemical master equation (CME), the reaction rate equation (RRE), and a hybrid method that combines these two equations. These three applications use propagation models in order to propagate probabilities and/or expected values and variances of the model''s variables.' author: - first_name: Thomas A full_name: Henzinger, Thomas A id: 40876CD8-F248-11E8-B48F-1D18A9856A87 last_name: Henzinger orcid: 0000−0002−2985−7724 - first_name: Maria full_name: Mateescu, Maria id: 3B43276C-F248-11E8-B48F-1D18A9856A87 last_name: Mateescu citation: ama: Henzinger TA, Mateescu M. The propagation approach for computing biochemical reaction networks. IEEE ACM Transactions on Computational Biology and Bioinformatics. 2012;10(2):310-322. doi:10.1109/TCBB.2012.91 apa: Henzinger, T. A., & Mateescu, M. (2012). The propagation approach for computing biochemical reaction networks. IEEE ACM Transactions on Computational Biology and Bioinformatics. IEEE. https://doi.org/10.1109/TCBB.2012.91 chicago: Henzinger, Thomas A, and Maria Mateescu. “The Propagation Approach for Computing Biochemical Reaction Networks.” IEEE ACM Transactions on Computational Biology and Bioinformatics. IEEE, 2012. https://doi.org/10.1109/TCBB.2012.91. ieee: T. A. Henzinger and M. Mateescu, “The propagation approach for computing biochemical reaction networks,” IEEE ACM Transactions on Computational Biology and Bioinformatics, vol. 10, no. 2. IEEE, pp. 310–322, 2012. ista: Henzinger TA, Mateescu M. 2012. The propagation approach for computing biochemical reaction networks. IEEE ACM Transactions on Computational Biology and Bioinformatics. 10(2), 310–322. mla: Henzinger, Thomas A., and Maria Mateescu. “The Propagation Approach for Computing Biochemical Reaction Networks.” IEEE ACM Transactions on Computational Biology and Bioinformatics, vol. 10, no. 2, IEEE, 2012, pp. 310–22, doi:10.1109/TCBB.2012.91. short: T.A. Henzinger, M. Mateescu, IEEE ACM Transactions on Computational Biology and Bioinformatics 10 (2012) 310–322. date_created: 2018-12-11T11:56:52Z date_published: 2012-07-03T00:00:00Z date_updated: 2021-01-12T06:56:38Z day: '03' department: - _id: ToHe - _id: CaGu doi: 10.1109/TCBB.2012.91 ec_funded: 1 external_id: pmid: - '22778152' intvolume: ' 10' issue: '2' language: - iso: eng month: '07' oa_version: None page: 310 - 322 pmid: 1 project: - _id: 25EE3708-B435-11E9-9278-68D0E5697425 call_identifier: FP7 grant_number: '267989' name: Quantitative Reactive Modeling publication: IEEE ACM Transactions on Computational Biology and Bioinformatics publication_status: published publisher: IEEE publist_id: '4625' quality_controlled: '1' scopus_import: 1 status: public title: The propagation approach for computing biochemical reaction networks type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 10 year: '2012' ... --- _id: '2313' abstract: - lang: eng text: The translation of "next-generation" sequencing directly to the clinic is still being assessed but has the potential for genetic diseases to reduce costs, advance accuracy, and point to unsuspected yet treatable conditions. To study its capability in the clinic, we performed whole-exome sequencing in 118 probands with a diagnosis of a pediatric-onset neurodevelopmental disease in which most known causes had been excluded. Twenty-two genes not previously identified as disease-causing were identified in this study (19% of cohort), further establishing exome sequencing as a useful tool for gene discovery. New genes identified included EXOC8 in Joubert syndrome and GFM2 in a patient with microcephaly, simplified gyral pattern, and insulin-dependent diabetes. Exome sequencing uncovered 10 probands (8% of cohort) with mutations in genes known to cause a disease different from the initial diagnosis. Upon further medical evaluation, these mutations were found to account for each proband's disease, leading to a change in diagnosis, some of which led to changes in patient management. Our data provide proof of principle that genomic strategies are useful in clarifying diagnosis in a proportion of patients with neurodevelopmental disorders. author: - first_name: Tracy full_name: Dixon-Salazar, Tracy J last_name: Dixon Salazar - first_name: Jennifer full_name: Silhavy, Jennifer L last_name: Silhavy - first_name: Nitin full_name: Udpa, Nitin last_name: Udpa - first_name: Jana full_name: Schroth, Jana last_name: Schroth - first_name: Stephanie full_name: Bielas, Stephanie L last_name: Bielas - first_name: Ashleigh full_name: Schaffer, Ashleigh E last_name: Schaffer - first_name: Jesus full_name: Olvera, Jesus last_name: Olvera - first_name: Vineet full_name: Bafna, Vineet K last_name: Bafna - first_name: Maha full_name: Zaki, Maha S last_name: Zaki - first_name: Ghada full_name: Abdel-Salam, Ghada M last_name: Abdel Salam - first_name: Lobna full_name: Mansour, Lobna A last_name: Mansour - first_name: Laila full_name: Selim, Laila A last_name: Selim - first_name: Sawsan full_name: Abdel-Hadi, Sawsan S last_name: Abdel Hadi - first_name: Naima full_name: Marzouki, Naima last_name: Marzouki - first_name: Tawfeg full_name: Ben-Omran, Tawfeg I last_name: Ben Omran - first_name: Nouriya full_name: Al-Saana, Nouriya A last_name: Al Saana - first_name: Fatma full_name: Sönmez, Fatma M last_name: Sönmez - first_name: Figen full_name: Celep, Figen last_name: Celep - first_name: Matloob full_name: Azam, Matloob last_name: Azam - first_name: Kiley full_name: Hill, Kiley J last_name: Hill - first_name: Adrienne full_name: Collazo, Adrienne last_name: Collazo - first_name: Ali full_name: Fenstermaker, Ali G last_name: Fenstermaker - first_name: Gaia full_name: Gaia Novarino id: 3E57A680-F248-11E8-B48F-1D18A9856A87 last_name: Novarino orcid: 0000-0002-7673-7178 - first_name: Naiara full_name: Akizu, Naiara last_name: Akizu - first_name: Kiran full_name: Garimella, Kiran V last_name: Garimella - first_name: Carrie full_name: Sougnez, Carrie L last_name: Sougnez - first_name: Carsten full_name: Russ, Carsten last_name: Russ - first_name: Stacey full_name: Gabriel, Stacey B last_name: Gabriel - first_name: Joseph full_name: Gleeson, Joseph G last_name: Gleeson citation: ama: Dixon Salazar T, Silhavy J, Udpa N, et al. Exome sequencing can improve diagnosis and alter patient management. Science Translational Medicine. 2012;4(138). doi:10.1126/scitranslmed.3003544 apa: Dixon Salazar, T., Silhavy, J., Udpa, N., Schroth, J., Bielas, S., Schaffer, A., … Gleeson, J. (2012). Exome sequencing can improve diagnosis and alter patient management. Science Translational Medicine. American Association for the Advancement of Science. https://doi.org/10.1126/scitranslmed.3003544 chicago: Dixon Salazar, Tracy, Jennifer Silhavy, Nitin Udpa, Jana Schroth, Stephanie Bielas, Ashleigh Schaffer, Jesus Olvera, et al. “Exome Sequencing Can Improve Diagnosis and Alter Patient Management.” Science Translational Medicine. American Association for the Advancement of Science, 2012. https://doi.org/10.1126/scitranslmed.3003544. ieee: T. Dixon Salazar et al., “Exome sequencing can improve diagnosis and alter patient management,” Science Translational Medicine, vol. 4, no. 138. American Association for the Advancement of Science, 2012. ista: Dixon Salazar T, Silhavy J, Udpa N, Schroth J, Bielas S, Schaffer A, Olvera J, Bafna V, Zaki M, Abdel Salam G, Mansour L, Selim L, Abdel Hadi S, Marzouki N, Ben Omran T, Al Saana N, Sönmez F, Celep F, Azam M, Hill K, Collazo A, Fenstermaker A, Novarino G, Akizu N, Garimella K, Sougnez C, Russ C, Gabriel S, Gleeson J. 2012. Exome sequencing can improve diagnosis and alter patient management. Science Translational Medicine. 4(138). mla: Dixon Salazar, Tracy, et al. “Exome Sequencing Can Improve Diagnosis and Alter Patient Management.” Science Translational Medicine, vol. 4, no. 138, American Association for the Advancement of Science, 2012, doi:10.1126/scitranslmed.3003544. short: T. Dixon Salazar, J. Silhavy, N. Udpa, J. Schroth, S. Bielas, A. Schaffer, J. Olvera, V. Bafna, M. Zaki, G. Abdel Salam, L. Mansour, L. Selim, S. Abdel Hadi, N. Marzouki, T. Ben Omran, N. Al Saana, F. Sönmez, F. Celep, M. Azam, K. Hill, A. Collazo, A. Fenstermaker, G. Novarino, N. Akizu, K. Garimella, C. Sougnez, C. Russ, S. Gabriel, J. Gleeson, Science Translational Medicine 4 (2012). date_created: 2018-12-11T11:56:56Z date_published: 2012-06-13T00:00:00Z date_updated: 2021-01-12T06:56:43Z day: '13' doi: 10.1126/scitranslmed.3003544 extern: 1 intvolume: ' 4' issue: '138' month: '06' publication: Science Translational Medicine publication_status: published publisher: American Association for the Advancement of Science publist_id: '4614' quality_controlled: 0 status: public title: Exome sequencing can improve diagnosis and alter patient management type: journal_article volume: 4 year: '2012' ... --- _id: '2314' abstract: - lang: eng text: Autism spectrum disorders are a genetically heterogeneous constellation of syndromes characterized by impairments in reciprocal social interaction. Available somatic treatments have limited efficacy. We have identified inactivating mutations in the gene BCKDK (Branched Chain Ketoacid Dehydrogenase Kinase) in consanguineous families with autism, epilepsy, and intellectual disability. The encoded protein is responsible for phosphorylation-mediated inactivation of the E1α subunit of branched-chain ketoacid dehydrogenase (BCKDH). Patients with homozygous BCKDK mutations display reductions in BCKDK messenger RNA and protein, E1α phosphorylation, and plasma branched-chain amino acids. Bckdk knockout mice show abnormal brain amino acid profiles and neurobehavioral deficits that respond to dietary supplementation. Thus, autism presenting with intellectual disability and epilepsy caused by BCKDK mutations represents a potentially treatable syndrome. author: - first_name: Gaia full_name: Gaia Novarino id: 3E57A680-F248-11E8-B48F-1D18A9856A87 last_name: Novarino orcid: 0000-0002-7673-7178 - first_name: Paul full_name: El-Fishawy, Paul last_name: El Fishawy - first_name: Hülya full_name: Kayserili, Hülya last_name: Kayserili - first_name: Nagwa full_name: Meguid, Nagwa A last_name: Meguid - first_name: Eric full_name: Scott, Eric M last_name: Scott - first_name: Jana full_name: Schroth, Jana last_name: Schroth - first_name: Jennifer full_name: Silhavy, Jennifer L last_name: Silhavy - first_name: Majdi full_name: Kara, Majdi last_name: Kara - first_name: Rehab full_name: Khalil, Rehab O last_name: Khalil - first_name: Tawfeg full_name: Ben-Omran, Tawfeg I last_name: Ben Omran - first_name: Adife full_name: Ercan-Sencicek, Adife G last_name: Ercan Sencicek - first_name: Adel full_name: Hashish, Adel F last_name: Hashish - first_name: Stephan full_name: Sanders, Stephan J last_name: Sanders - first_name: Abha full_name: Gupta, Abha R last_name: Gupta - first_name: Hebatalla full_name: Hashem, Hebatalla S last_name: Hashem - first_name: Dietrich full_name: Matern, Dietrich last_name: Matern - first_name: Stacey full_name: Gabriel, Stacey B last_name: Gabriel - first_name: Lawrence full_name: Sweetman, Lawrence last_name: Sweetman - first_name: Yasmeen full_name: Rahimi, Yasmeen last_name: Rahimi - first_name: Robert full_name: Harris, Robert A last_name: Harris - first_name: Matthew full_name: State, Matthew W last_name: State - first_name: Joseph full_name: Gleeson, Joseph G last_name: Gleeson citation: ama: Novarino G, El Fishawy P, Kayserili H, et al. Mutations in BCKD-kinase lead to a potentially treatable form of autism with epilepsy. Science. 2012;338(6105):394-397. doi:10.1126/science.1224631 apa: Novarino, G., El Fishawy, P., Kayserili, H., Meguid, N., Scott, E., Schroth, J., … Gleeson, J. (2012). Mutations in BCKD-kinase lead to a potentially treatable form of autism with epilepsy. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.1224631 chicago: Novarino, Gaia, Paul El Fishawy, Hülya Kayserili, Nagwa Meguid, Eric Scott, Jana Schroth, Jennifer Silhavy, et al. “Mutations in BCKD-Kinase Lead to a Potentially Treatable Form of Autism with Epilepsy.” Science. American Association for the Advancement of Science, 2012. https://doi.org/10.1126/science.1224631. ieee: G. Novarino et al., “Mutations in BCKD-kinase lead to a potentially treatable form of autism with epilepsy,” Science, vol. 338, no. 6105. American Association for the Advancement of Science, pp. 394–397, 2012. ista: Novarino G, El Fishawy P, Kayserili H, Meguid N, Scott E, Schroth J, Silhavy J, Kara M, Khalil R, Ben Omran T, Ercan Sencicek A, Hashish A, Sanders S, Gupta A, Hashem H, Matern D, Gabriel S, Sweetman L, Rahimi Y, Harris R, State M, Gleeson J. 2012. Mutations in BCKD-kinase lead to a potentially treatable form of autism with epilepsy. Science. 338(6105), 394–397. mla: Novarino, Gaia, et al. “Mutations in BCKD-Kinase Lead to a Potentially Treatable Form of Autism with Epilepsy.” Science, vol. 338, no. 6105, American Association for the Advancement of Science, 2012, pp. 394–97, doi:10.1126/science.1224631. short: G. Novarino, P. El Fishawy, H. Kayserili, N. Meguid, E. Scott, J. Schroth, J. Silhavy, M. Kara, R. Khalil, T. Ben Omran, A. Ercan Sencicek, A. Hashish, S. Sanders, A. Gupta, H. Hashem, D. Matern, S. Gabriel, L. Sweetman, Y. Rahimi, R. Harris, M. State, J. Gleeson, Science 338 (2012) 394–397. date_created: 2018-12-11T11:56:56Z date_published: 2012-10-19T00:00:00Z date_updated: 2021-01-12T06:56:43Z day: '19' doi: 10.1126/science.1224631 extern: 1 intvolume: ' 338' issue: '6105' month: '10' page: 394 - 397 publication: Science publication_status: published publisher: American Association for the Advancement of Science publist_id: '4613' quality_controlled: 0 status: public title: Mutations in BCKD-kinase lead to a potentially treatable form of autism with epilepsy type: journal_article volume: 338 year: '2012' ... --- _id: '2318' abstract: - lang: eng text: 'We show that bosons interacting via pair potentials with negative scattering length form bound states for a suitable number of particles. In other words, the absence of many-particle bound states of any kind implies the non-negativity of the scattering length of the interaction potential. ' acknowledgement: 'Partial financial support by NSERC ' author: - first_name: Robert full_name: Seiringer, Robert id: 4AFD0470-F248-11E8-B48F-1D18A9856A87 last_name: Seiringer orcid: 0000-0002-6781-0521 citation: ama: Seiringer R. Absence of bound states implies non-negativity of the scattering length. Journal of Spectral Theory. 2012;2(3):321-328. doi:10.4171/JST/31 apa: Seiringer, R. (2012). Absence of bound states implies non-negativity of the scattering length. Journal of Spectral Theory. European Mathematical Society. https://doi.org/10.4171/JST/31 chicago: Seiringer, Robert. “Absence of Bound States Implies Non-Negativity of the Scattering Length.” Journal of Spectral Theory. European Mathematical Society, 2012. https://doi.org/10.4171/JST/31. ieee: R. Seiringer, “Absence of bound states implies non-negativity of the scattering length,” Journal of Spectral Theory, vol. 2, no. 3. European Mathematical Society, pp. 321–328, 2012. ista: Seiringer R. 2012. Absence of bound states implies non-negativity of the scattering length. Journal of Spectral Theory. 2(3), 321–328. mla: Seiringer, Robert. “Absence of Bound States Implies Non-Negativity of the Scattering Length.” Journal of Spectral Theory, vol. 2, no. 3, European Mathematical Society, 2012, pp. 321–28, doi:10.4171/JST/31. short: R. Seiringer, Journal of Spectral Theory 2 (2012) 321–328. date_created: 2018-12-11T11:56:58Z date_published: 2012-06-24T00:00:00Z date_updated: 2021-01-12T06:56:44Z day: '24' department: - _id: RoSe doi: 10.4171/JST/31 intvolume: ' 2' issue: '3' language: - iso: eng main_file_link: - open_access: '1' url: http://arxiv.org/abs/1204.0435 month: '06' oa: 1 oa_version: Preprint page: 321-328 publication: Journal of Spectral Theory publication_status: published publisher: European Mathematical Society publist_id: '4609' quality_controlled: '1' status: public title: Absence of bound states implies non-negativity of the scattering length type: journal_article user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87 volume: 2 year: '2012' ... --- _id: '2317' abstract: - lang: eng text: 'We present a summary of our recent rigorous derivation of the celebrated Ginzburg-Landau (GL) theory, starting from the microscopic Bardeen-Cooper-Schrieffer (BCS) model. Close to the critical temperature, GL arises as an effective theory on the macroscopic scale. The relevant scaling limit is semiclassical in nature, and semiclassical analysis, with minimal regularity assumptions, plays an important part in our proof. ' author: - first_name: Rupert full_name: Frank, Rupert L last_name: Frank - first_name: Christian full_name: Hainzl, Christian last_name: Hainzl - first_name: Robert full_name: Robert Seiringer id: 4AFD0470-F248-11E8-B48F-1D18A9856A87 last_name: Seiringer orcid: 0000-0002-6781-0521 - first_name: Jan full_name: Solovej, Jan P last_name: Solovej citation: ama: 'Frank R, Hainzl C, Seiringer R, Solovej J. Microscopic derivation of the Ginzburg-Landau model. In: World Scientific Publishing; 2012:575-583. doi:10.1142/9789814449243_0060' apa: 'Frank, R., Hainzl, C., Seiringer, R., & Solovej, J. (2012). Microscopic derivation of the Ginzburg-Landau model (pp. 575–583). Presented at the ICMP: International Congress on Mathematical Physics, World Scientific Publishing. https://doi.org/10.1142/9789814449243_0060' chicago: Frank, Rupert, Christian Hainzl, Robert Seiringer, and Jan Solovej. “Microscopic Derivation of the Ginzburg-Landau Model,” 575–83. World Scientific Publishing, 2012. https://doi.org/10.1142/9789814449243_0060. ieee: 'R. Frank, C. Hainzl, R. Seiringer, and J. Solovej, “Microscopic derivation of the Ginzburg-Landau model,” presented at the ICMP: International Congress on Mathematical Physics, 2012, pp. 575–583.' ista: 'Frank R, Hainzl C, Seiringer R, Solovej J. 2012. Microscopic derivation of the Ginzburg-Landau model. ICMP: International Congress on Mathematical Physics, 575–583.' mla: Frank, Rupert, et al. Microscopic Derivation of the Ginzburg-Landau Model. World Scientific Publishing, 2012, pp. 575–83, doi:10.1142/9789814449243_0060. short: R. Frank, C. Hainzl, R. Seiringer, J. Solovej, in:, World Scientific Publishing, 2012, pp. 575–583. conference: name: 'ICMP: International Congress on Mathematical Physics' date_created: 2018-12-11T11:56:57Z date_published: 2012-08-01T00:00:00Z date_updated: 2021-01-12T06:56:44Z day: '01' doi: 10.1142/9789814449243_0060 extern: 1 main_file_link: - open_access: '1' url: http://arxiv.org/abs/1209.1080 month: '08' oa: 1 page: 575 - 583 publication_status: published publisher: World Scientific Publishing publist_id: '4610' quality_controlled: 0 status: public title: Microscopic derivation of the Ginzburg-Landau model type: conference year: '2012' ... --- _id: '2316' abstract: - lang: eng text: 'We summarize our recent results on the ground state energy of multi-polaron systems. In particular, we discuss stability and existence of the thermodynamic limit, and we discuss the absence of binding in the case of large Coulomb repulsion and the corresponding binding-unbinding transition. We also consider the Pekar-Tomasevich approximation to the ground state energy and we study radial symmetry of the ground state density. ' author: - first_name: Rupert full_name: Frank, Rupert L last_name: Frank - first_name: Élliott full_name: Lieb, Élliott H last_name: Lieb - first_name: Robert full_name: Robert Seiringer id: 4AFD0470-F248-11E8-B48F-1D18A9856A87 last_name: Seiringer orcid: 0000-0002-6781-0521 - first_name: Lawrence full_name: Thomas, Lawrence E last_name: Thomas citation: ama: 'Frank R, Lieb É, Seiringer R, Thomas L. Ground state properties of multi-polaron systems. In: World Scientific Publishing; 2012:477-485. doi:10.1142/9789814449243_0045' apa: 'Frank, R., Lieb, É., Seiringer, R., & Thomas, L. (2012). Ground state properties of multi-polaron systems (pp. 477–485). Presented at the ICMP: International Congress on Mathematical Physics, World Scientific Publishing. https://doi.org/10.1142/9789814449243_0045' chicago: Frank, Rupert, Élliott Lieb, Robert Seiringer, and Lawrence Thomas. “Ground State Properties of Multi-Polaron Systems,” 477–85. World Scientific Publishing, 2012. https://doi.org/10.1142/9789814449243_0045. ieee: 'R. Frank, É. Lieb, R. Seiringer, and L. Thomas, “Ground state properties of multi-polaron systems,” presented at the ICMP: International Congress on Mathematical Physics, 2012, pp. 477–485.' ista: 'Frank R, Lieb É, Seiringer R, Thomas L. 2012. Ground state properties of multi-polaron systems. ICMP: International Congress on Mathematical Physics, 477–485.' mla: Frank, Rupert, et al. Ground State Properties of Multi-Polaron Systems. World Scientific Publishing, 2012, pp. 477–85, doi:10.1142/9789814449243_0045. short: R. Frank, É. Lieb, R. Seiringer, L. Thomas, in:, World Scientific Publishing, 2012, pp. 477–485. conference: name: 'ICMP: International Congress on Mathematical Physics' date_created: 2018-12-11T11:56:57Z date_published: 2012-08-01T00:00:00Z date_updated: 2021-01-12T06:56:44Z day: '01' doi: 10.1142/9789814449243_0045 extern: 1 main_file_link: - open_access: '1' url: http://arxiv.org/abs/1209.3717 month: '08' oa: 1 page: 477 - 485 publication_status: published publisher: World Scientific Publishing publist_id: '4611' quality_controlled: 0 status: public title: Ground state properties of multi-polaron systems type: conference year: '2012' ... --- _id: '237' abstract: - lang: eng text: The Manin conjecture is established for Châtelet surfaces over Q aris-ing as minimal proper smooth models of the surface Y 2 + Z 2 = f(X) in A 3 Q, where f ∈ Z[X] is a totally reducible polynomial of degree 3 without repeated roots. These surfaces do not satisfy weak approximation. acknowledgement: "EP/E053262/1\tEngineering and Physical Sciences Research Council" author: - first_name: Régis full_name: de la Bretèche, Régis last_name: De La Bretèche - first_name: Timothy D full_name: Timothy Browning id: 35827D50-F248-11E8-B48F-1D18A9856A87 last_name: Browning orcid: 0000-0002-8314-0177 - first_name: Emmanuel full_name: Peyre, Emmanuel last_name: Peyre citation: ama: De La Bretèche R, Browning TD, Peyre E. On Manin’s conjecture for a family of Châtelet surfaces. Annals of Mathematics. 2012;175(1):297-343. doi:10.4007/annals.2012.175.1.8 apa: De La Bretèche, R., Browning, T. D., & Peyre, E. (2012). On Manin’s conjecture for a family of Châtelet surfaces. Annals of Mathematics. Princeton University Press. https://doi.org/10.4007/annals.2012.175.1.8 chicago: De La Bretèche, Régis, Timothy D Browning, and Emmanuel Peyre. “On Manin’s Conjecture for a Family of Châtelet Surfaces.” Annals of Mathematics. Princeton University Press, 2012. https://doi.org/10.4007/annals.2012.175.1.8. ieee: R. De La Bretèche, T. D. Browning, and E. Peyre, “On Manin’s conjecture for a family of Châtelet surfaces,” Annals of Mathematics, vol. 175, no. 1. Princeton University Press, pp. 297–343, 2012. ista: De La Bretèche R, Browning TD, Peyre E. 2012. On Manin’s conjecture for a family of Châtelet surfaces. Annals of Mathematics. 175(1), 297–343. mla: De La Bretèche, Régis, et al. “On Manin’s Conjecture for a Family of Châtelet Surfaces.” Annals of Mathematics, vol. 175, no. 1, Princeton University Press, 2012, pp. 297–343, doi:10.4007/annals.2012.175.1.8. short: R. De La Bretèche, T.D. Browning, E. Peyre, Annals of Mathematics 175 (2012) 297–343. date_created: 2018-12-11T11:45:22Z date_published: 2012-01-01T00:00:00Z date_updated: 2021-01-12T06:57:04Z day: '01' doi: 10.4007/annals.2012.175.1.8 extern: 1 intvolume: ' 175' issue: '1' month: '01' page: 297 - 343 publication: Annals of Mathematics publication_status: published publisher: Princeton University Press publist_id: '7667' quality_controlled: 0 status: public title: On Manin's conjecture for a family of Châtelet surfaces type: journal_article volume: 175 year: '2012' ... --- _id: '238' abstract: - lang: eng text: For given positive integers a, b, q we investigate the density of solutions (x, y) ∈ Z2 to congruences ax + by2 ≡ 0 mod q. acknowledgement: "EP/E053262/1\tEngineering and Physical Sciences Research Council" author: - first_name: Stephan full_name: Baier, Stephan last_name: Baier - first_name: Timothy D full_name: Timothy Browning id: 35827D50-F248-11E8-B48F-1D18A9856A87 last_name: Browning orcid: 0000-0002-8314-0177 citation: ama: Baier S, Browning TD. Inhomogeneous quadratic congruences. Functiones et Approximatio, Commentarii Mathematici. 2012;47(2):267-286. doi:10.7169/facm/2012.47.2.9 apa: Baier, S., & Browning, T. D. (2012). Inhomogeneous quadratic congruences. Functiones et Approximatio, Commentarii Mathematici. Adam Mickiewicz University Press. https://doi.org/10.7169/facm/2012.47.2.9 chicago: Baier, Stephan, and Timothy D Browning. “Inhomogeneous Quadratic Congruences.” Functiones et Approximatio, Commentarii Mathematici. Adam Mickiewicz University Press, 2012. https://doi.org/10.7169/facm/2012.47.2.9. ieee: S. Baier and T. D. Browning, “Inhomogeneous quadratic congruences,” Functiones et Approximatio, Commentarii Mathematici, vol. 47, no. 2. Adam Mickiewicz University Press, pp. 267–286, 2012. ista: Baier S, Browning TD. 2012. Inhomogeneous quadratic congruences. Functiones et Approximatio, Commentarii Mathematici. 47(2), 267–286. mla: Baier, Stephan, and Timothy D. Browning. “Inhomogeneous Quadratic Congruences.” Functiones et Approximatio, Commentarii Mathematici, vol. 47, no. 2, Adam Mickiewicz University Press, 2012, pp. 267–86, doi:10.7169/facm/2012.47.2.9. short: S. Baier, T.D. Browning, Functiones et Approximatio, Commentarii Mathematici 47 (2012) 267–286. date_created: 2018-12-11T11:45:22Z date_published: 2012-12-20T00:00:00Z date_updated: 2021-01-12T06:57:08Z day: '20' doi: 10.7169/facm/2012.47.2.9 extern: 1 intvolume: ' 47' issue: '2' month: '12' page: 267 - 286 publication: Functiones et Approximatio, Commentarii Mathematici publication_status: published publisher: Adam Mickiewicz University Press publist_id: '7666' quality_controlled: 0 status: public title: Inhomogeneous quadratic congruences type: journal_article volume: 47 year: '2012' ... --- _id: '2399' abstract: - lang: eng text: | Bose–Einstein condensation (BEC) in cold atomic gases was first achieved experimentally in 1995 [1, 6]. After initial failed attempts with spin-polarized atomic hydrogen, the first successful demonstrations of this phenomenon used gases of rubidium and sodium atoms, respectively. Since then there has been a surge of activity in this field, with ingenious experiments putting forth more and more astonishing results about the behavior of matter at very cold temperatures. alternative_title: - Lecture Notes in Mathematics author: - first_name: Robert full_name: Robert Seiringer id: 4AFD0470-F248-11E8-B48F-1D18A9856A87 last_name: Seiringer orcid: 0000-0002-6781-0521 citation: ama: 'Seiringer R. Cold quantum gases and bose einstein condensation. In: Rivasseau V, Seiringer R, Solovej J, Spencer T, eds. Quantum Many Body Systems. Vol 2051. Springer; 2012:55-92. doi:10.1007/978-3-642-29511-9_2' apa: Seiringer, R. (2012). Cold quantum gases and bose einstein condensation. In V. Rivasseau, R. Seiringer, J. Solovej, & T. Spencer (Eds.), Quantum Many Body Systems (Vol. 2051, pp. 55–92). Springer. https://doi.org/10.1007/978-3-642-29511-9_2 chicago: Seiringer, Robert. “Cold Quantum Gases and Bose Einstein Condensation.” In Quantum Many Body Systems, edited by Vincent Rivasseau, Robert Seiringer, Jan Solovej, and Thomas Spencer, 2051:55–92. Springer, 2012. https://doi.org/10.1007/978-3-642-29511-9_2. ieee: R. Seiringer, “Cold quantum gases and bose einstein condensation,” in Quantum Many Body Systems, vol. 2051, V. Rivasseau, R. Seiringer, J. Solovej, and T. Spencer, Eds. Springer, 2012, pp. 55–92. ista: 'Seiringer R. 2012.Cold quantum gases and bose einstein condensation. In: Quantum Many Body Systems. Lecture Notes in Mathematics, vol. 2051, 55–92.' mla: Seiringer, Robert. “Cold Quantum Gases and Bose Einstein Condensation.” Quantum Many Body Systems, edited by Vincent Rivasseau et al., vol. 2051, Springer, 2012, pp. 55–92, doi:10.1007/978-3-642-29511-9_2. short: R. Seiringer, in:, V. Rivasseau, R. Seiringer, J. Solovej, T. Spencer (Eds.), Quantum Many Body Systems, Springer, 2012, pp. 55–92. date_created: 2018-12-11T11:57:26Z date_published: 2012-01-01T00:00:00Z date_updated: 2021-01-12T06:57:14Z day: '01' doi: 10.1007/978-3-642-29511-9_2 editor: - first_name: Vincent full_name: Rivasseau, Vincent last_name: Rivasseau - first_name: Robert full_name: Robert Seiringer id: 4AFD0470-F248-11E8-B48F-1D18A9856A87 last_name: Seiringer orcid: 0000-0002-6781-0521 - first_name: Jan full_name: Solovej, Jan P last_name: Solovej - first_name: Thomas full_name: Spencer, Thomas last_name: Spencer extern: 1 intvolume: ' 2051' month: '01' page: 55 - 92 publication: Quantum Many Body Systems publication_status: published publisher: Springer publist_id: '4526' quality_controlled: 0 status: public title: Cold quantum gases and bose einstein condensation type: book_chapter volume: 2051 year: '2012' ... --- _id: '2394' abstract: - lang: eng text: We study the BCS gap equation for a Fermi gas with unequal population of spin-up and spin-down states. For cosh (δ μ/T) ≤ 2, with T the temperature and δμ the chemical potential difference, the question of existence of non-trivial solutions can be reduced to spectral properties of a linear operator, similar to the unpolarized case studied previously in [Frank, R. L., Hainzl, C., Naboko, S., and Seiringer, R., J., Geom. Anal.17, 559-567 (2007)10.1007/BF02937429; Hainzl, C., Hamza, E., Seiringer, R., and Solovej, J. P., Commun., Math. Phys.281, 349-367 (2008)10.1007/s00220-008-0489-2; and Hainzl, C. and Seiringer, R., Phys. Rev. B77, 184517-110 435 (2008)]10.1103/PhysRevB.77.184517. For cosh (δ μ/T) > 2 the phase diagram is more complicated, however. We derive upper and lower bounds for the critical temperature, and study their behavior in the small coupling limit. author: - first_name: Abraham full_name: Freiji, Abraham last_name: Freiji - first_name: Christian full_name: Hainzl, Christian last_name: Hainzl - first_name: Robert full_name: Robert Seiringer id: 4AFD0470-F248-11E8-B48F-1D18A9856A87 last_name: Seiringer orcid: 0000-0002-6781-0521 citation: ama: Freiji A, Hainzl C, Seiringer R. The gap equation for spin-polarized fermions. Journal of Mathematical Physics. 2012;53(1). doi:10.1063/1.3670747 apa: Freiji, A., Hainzl, C., & Seiringer, R. (2012). The gap equation for spin-polarized fermions. Journal of Mathematical Physics. American Institute of Physics. https://doi.org/10.1063/1.3670747 chicago: Freiji, Abraham, Christian Hainzl, and Robert Seiringer. “The Gap Equation for Spin-Polarized Fermions.” Journal of Mathematical Physics. American Institute of Physics, 2012. https://doi.org/10.1063/1.3670747. ieee: A. Freiji, C. Hainzl, and R. Seiringer, “The gap equation for spin-polarized fermions,” Journal of Mathematical Physics, vol. 53, no. 1. American Institute of Physics, 2012. ista: Freiji A, Hainzl C, Seiringer R. 2012. The gap equation for spin-polarized fermions. Journal of Mathematical Physics. 53(1). mla: Freiji, Abraham, et al. “The Gap Equation for Spin-Polarized Fermions.” Journal of Mathematical Physics, vol. 53, no. 1, American Institute of Physics, 2012, doi:10.1063/1.3670747. short: A. Freiji, C. Hainzl, R. Seiringer, Journal of Mathematical Physics 53 (2012). date_created: 2018-12-11T11:57:25Z date_published: 2012-01-01T00:00:00Z date_updated: 2021-01-12T06:57:13Z day: '01' doi: 10.1063/1.3670747 extern: 1 intvolume: ' 53' issue: '1' month: '01' publication: Journal of Mathematical Physics publication_status: published publisher: American Institute of Physics publist_id: '4532' quality_controlled: 0 status: public title: The gap equation for spin-polarized fermions type: journal_article volume: 53 year: '2012' ... --- _id: '2395' abstract: - lang: eng text: 'We give the first rigorous derivation of the celebrated Ginzburg-Landau (GL) theory, starting from the microscopic Bardeen-Cooper-Schrieffer (BCS) model. Close to the critical temperature, GL arises as an effective theory on the macroscopic scale. The relevant scaling limit is semiclassical in nature, and semiclassical analysis, with minimal regularity assumptions, plays an important part in our proof. ' author: - first_name: Rupert full_name: Frank, Rupert L last_name: Frank - first_name: Christian full_name: Hainzl, Christian last_name: Hainzl - first_name: Robert full_name: Robert Seiringer id: 4AFD0470-F248-11E8-B48F-1D18A9856A87 last_name: Seiringer orcid: 0000-0002-6781-0521 - first_name: Jan full_name: Solovej, Jan P last_name: Solovej citation: ama: Frank R, Hainzl C, Seiringer R, Solovej J. Microscopic derivation of Ginzburg-Landau theory. Journal of the American Mathematical Society. 2012;25(3):667-713. doi:10.1090/S0894-0347-2012-00735-8 apa: Frank, R., Hainzl, C., Seiringer, R., & Solovej, J. (2012). Microscopic derivation of Ginzburg-Landau theory. Journal of the American Mathematical Society. American Mathematical Society. https://doi.org/10.1090/S0894-0347-2012-00735-8 chicago: Frank, Rupert, Christian Hainzl, Robert Seiringer, and Jan Solovej. “Microscopic Derivation of Ginzburg-Landau Theory.” Journal of the American Mathematical Society. American Mathematical Society, 2012. https://doi.org/10.1090/S0894-0347-2012-00735-8. ieee: R. Frank, C. Hainzl, R. Seiringer, and J. Solovej, “Microscopic derivation of Ginzburg-Landau theory,” Journal of the American Mathematical Society, vol. 25, no. 3. American Mathematical Society, pp. 667–713, 2012. ista: Frank R, Hainzl C, Seiringer R, Solovej J. 2012. Microscopic derivation of Ginzburg-Landau theory. Journal of the American Mathematical Society. 25(3), 667–713. mla: Frank, Rupert, et al. “Microscopic Derivation of Ginzburg-Landau Theory.” Journal of the American Mathematical Society, vol. 25, no. 3, American Mathematical Society, 2012, pp. 667–713, doi:10.1090/S0894-0347-2012-00735-8. short: R. Frank, C. Hainzl, R. Seiringer, J. Solovej, Journal of the American Mathematical Society 25 (2012) 667–713. date_created: 2018-12-11T11:57:25Z date_published: 2012-01-01T00:00:00Z date_updated: 2021-01-12T06:57:13Z day: '01' doi: 10.1090/S0894-0347-2012-00735-8 extern: 1 intvolume: ' 25' issue: '3' main_file_link: - open_access: '1' url: http://arxiv.org/abs/1102.4001 month: '01' oa: 1 page: 667 - 713 publication: Journal of the American Mathematical Society publication_status: published publisher: American Mathematical Society publist_id: '4531' quality_controlled: 0 status: public title: Microscopic derivation of Ginzburg-Landau theory type: journal_article volume: 25 year: '2012' ... --- _id: '2396' abstract: - lang: eng text: A positive temperature analogue of the scattering length of a potential V can be defined via integrating the difference of the heat kernels of -Δ and, with Δ the Laplacian. An upper bound on this quantity is a crucial input in the derivation of a bound on the critical temperature of a dilute Bose gas (Seiringer and Ueltschi in Phys Rev B 80:014502, 2009). In (Seiringer and Ueltschi in Phys Rev B 80:014502, 2009), a bound was given in the case of finite range potentials and sufficiently low temperature. In this paper, we improve the bound and extend it to potentials of infinite range. author: - first_name: Benjamin full_name: Landon, Benjamin last_name: Landon - first_name: Robert full_name: Robert Seiringer id: 4AFD0470-F248-11E8-B48F-1D18A9856A87 last_name: Seiringer orcid: 0000-0002-6781-0521 citation: ama: Landon B, Seiringer R. The scattering length at positive temperature. Letters in Mathematical Physics. 2012;100(3):237-243. doi:10.1007/s11005-012-0566-5 apa: Landon, B., & Seiringer, R. (2012). The scattering length at positive temperature. Letters in Mathematical Physics. Springer. https://doi.org/10.1007/s11005-012-0566-5 chicago: Landon, Benjamin, and Robert Seiringer. “The Scattering Length at Positive Temperature.” Letters in Mathematical Physics. Springer, 2012. https://doi.org/10.1007/s11005-012-0566-5. ieee: B. Landon and R. Seiringer, “The scattering length at positive temperature,” Letters in Mathematical Physics, vol. 100, no. 3. Springer, pp. 237–243, 2012. ista: Landon B, Seiringer R. 2012. The scattering length at positive temperature. Letters in Mathematical Physics. 100(3), 237–243. mla: Landon, Benjamin, and Robert Seiringer. “The Scattering Length at Positive Temperature.” Letters in Mathematical Physics, vol. 100, no. 3, Springer, 2012, pp. 237–43, doi:10.1007/s11005-012-0566-5. short: B. Landon, R. Seiringer, Letters in Mathematical Physics 100 (2012) 237–243. date_created: 2018-12-11T11:57:25Z date_published: 2012-06-01T00:00:00Z date_updated: 2021-01-12T06:57:13Z day: '01' doi: 10.1007/s11005-012-0566-5 extern: 1 intvolume: ' 100' issue: '3' main_file_link: - open_access: '1' url: http://arxiv.org/abs/1111.1683 month: '06' oa: 1 page: 237 - 243 publication: Letters in Mathematical Physics publication_status: published publisher: Springer publist_id: '4529' quality_controlled: 0 status: public title: The scattering length at positive temperature type: journal_article volume: 100 year: '2012' ... --- _id: '2398' abstract: - lang: eng text: We extend the mathematical theory of quantum hypothesis testing to the general W*-algebraic setting and explore its relation with recent developments in non-equilibrium quantum statistical mechanics. In particular, we relate the large deviation principle for the full counting statistics of entropy flow to quantum hypothesis testing of the arrow of time. author: - first_name: Vojkan full_name: Jakšić, Vojkan last_name: Jakšić - first_name: Yoshiko full_name: Ogata, Yoshiko last_name: Ogata - first_name: Claude full_name: Pillet, Claude A last_name: Pillet - first_name: Robert full_name: Robert Seiringer id: 4AFD0470-F248-11E8-B48F-1D18A9856A87 last_name: Seiringer orcid: 0000-0002-6781-0521 citation: ama: Jakšić V, Ogata Y, Pillet C, Seiringer R. Quantum hypothesis testing and non-equilibrium statistical mechanics. Reviews in Mathematical Physics. 2012;24(6). doi:10.1142/S0129055X12300026 apa: Jakšić, V., Ogata, Y., Pillet, C., & Seiringer, R. (2012). Quantum hypothesis testing and non-equilibrium statistical mechanics. Reviews in Mathematical Physics. World Scientific Publishing. https://doi.org/10.1142/S0129055X12300026 chicago: Jakšić, Vojkan, Yoshiko Ogata, Claude Pillet, and Robert Seiringer. “Quantum Hypothesis Testing and Non-Equilibrium Statistical Mechanics.” Reviews in Mathematical Physics. World Scientific Publishing, 2012. https://doi.org/10.1142/S0129055X12300026. ieee: V. Jakšić, Y. Ogata, C. Pillet, and R. Seiringer, “Quantum hypothesis testing and non-equilibrium statistical mechanics,” Reviews in Mathematical Physics, vol. 24, no. 6. World Scientific Publishing, 2012. ista: Jakšić V, Ogata Y, Pillet C, Seiringer R. 2012. Quantum hypothesis testing and non-equilibrium statistical mechanics. Reviews in Mathematical Physics. 24(6). mla: Jakšić, Vojkan, et al. “Quantum Hypothesis Testing and Non-Equilibrium Statistical Mechanics.” Reviews in Mathematical Physics, vol. 24, no. 6, World Scientific Publishing, 2012, doi:10.1142/S0129055X12300026. short: V. Jakšić, Y. Ogata, C. Pillet, R. Seiringer, Reviews in Mathematical Physics 24 (2012). date_created: 2018-12-11T11:57:26Z date_published: 2012-07-01T00:00:00Z date_updated: 2020-07-14T12:45:40Z day: '01' doi: 10.1142/S0129055X12300026 extern: 1 intvolume: ' 24' issue: '6' main_file_link: - open_access: '1' url: http://arxiv.org/abs/1109.3804 month: '07' oa: 1 publication: Reviews in Mathematical Physics publication_status: published publisher: World Scientific Publishing publist_id: '4528' quality_controlled: 0 status: public title: Quantum hypothesis testing and non-equilibrium statistical mechanics type: review volume: 24 year: '2012' ... --- _id: '2397' abstract: - lang: eng text: We consider the low-density limit of a Fermi gas in the BCS approximation. We show that if the interaction potential allows for a two-particle bound state, the system at zero temperature is well approximated by the Gross-Pitaevskii functional, describing a Bose-Einstein condensate of fermion pairs. author: - first_name: Christian full_name: Hainzl, Christian last_name: Hainzl - first_name: Robert full_name: Robert Seiringer id: 4AFD0470-F248-11E8-B48F-1D18A9856A87 last_name: Seiringer orcid: 0000-0002-6781-0521 citation: ama: Hainzl C, Seiringer R. Low density limit of BCS theory and Bose-Einstein condensation of Fermion pairs. Letters in Mathematical Physics. 2012;100(2):119-138. doi:10.1007/s11005-011-0535-4 apa: Hainzl, C., & Seiringer, R. (2012). Low density limit of BCS theory and Bose-Einstein condensation of Fermion pairs. Letters in Mathematical Physics. Springer. https://doi.org/10.1007/s11005-011-0535-4 chicago: Hainzl, Christian, and Robert Seiringer. “Low Density Limit of BCS Theory and Bose-Einstein Condensation of Fermion Pairs.” Letters in Mathematical Physics. Springer, 2012. https://doi.org/10.1007/s11005-011-0535-4. ieee: C. Hainzl and R. Seiringer, “Low density limit of BCS theory and Bose-Einstein condensation of Fermion pairs,” Letters in Mathematical Physics, vol. 100, no. 2. Springer, pp. 119–138, 2012. ista: Hainzl C, Seiringer R. 2012. Low density limit of BCS theory and Bose-Einstein condensation of Fermion pairs. Letters in Mathematical Physics. 100(2), 119–138. mla: Hainzl, Christian, and Robert Seiringer. “Low Density Limit of BCS Theory and Bose-Einstein Condensation of Fermion Pairs.” Letters in Mathematical Physics, vol. 100, no. 2, Springer, 2012, pp. 119–38, doi:10.1007/s11005-011-0535-4. short: C. Hainzl, R. Seiringer, Letters in Mathematical Physics 100 (2012) 119–138. date_created: 2018-12-11T11:57:25Z date_published: 2012-05-01T00:00:00Z date_updated: 2021-01-12T06:57:14Z day: '01' doi: 10.1007/s11005-011-0535-4 extern: 1 intvolume: ' 100' issue: '2' main_file_link: - open_access: '1' url: http://arxiv.org/abs/1105.1100 month: '05' oa: 1 page: 119 - 138 publication: Letters in Mathematical Physics publication_status: published publisher: Springer publist_id: '4530' quality_controlled: 0 status: public title: Low density limit of BCS theory and Bose-Einstein condensation of Fermion pairs type: journal_article volume: 100 year: '2012' ...